data_4Q2L # _entry.id 4Q2L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Q2L pdb_00004q2l 10.2210/pdb4q2l/pdb RCSB RCSB085524 ? ? WWPDB D_1000085524 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3DXS 'Similar protein folding.' unspecified PDB 4Q2M . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4Q2L _pdbx_database_status.recvd_initial_deposition_date 2014-04-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Zhang, X.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Atomic resolution structure of the E. coli YajR transporter YAM domain.' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 450 _citation.page_first 929 _citation.page_last 935 _citation.year 2014 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 1090-2104 _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24952155 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2014.06.053 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, D.' 1 ? primary 'Zhao, Y.' 2 ? primary 'Fan, J.' 3 ? primary 'Liu, X.' 4 ? primary 'Wu, Y.' 5 ? primary 'Feng, W.' 6 ? primary 'Zhang, X.C.' 7 ? # _cell.entry_id 4Q2L _cell.length_a 34.970 _cell.length_b 61.134 _cell.length_c 70.391 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4Q2L _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Major facilitator superfamily MFS_1' 7858.906 1 ? ? 'YAM domain, UNP residues 388-454' ? 2 non-polymer syn 'ACETIC ACID' 60.052 2 ? ? ? ? 3 non-polymer syn 'CADMIUM ION' 112.411 2 ? ? ? ? 4 water nat water 18.015 89 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Predicted transporter, YajR MFS transporter' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSHMKEPPYVSSLRIEIPADIAANEALKVRLLETEGVKEVLIAEEEHSAYVKIDSKVTNRFEVEQAIRQA _entity_poly.pdbx_seq_one_letter_code_can GSHMKEPPYVSSLRIEIPADIAANEALKVRLLETEGVKEVLIAEEEHSAYVKIDSKVTNRFEVEQAIRQA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 LYS n 1 6 GLU n 1 7 PRO n 1 8 PRO n 1 9 TYR n 1 10 VAL n 1 11 SER n 1 12 SER n 1 13 LEU n 1 14 ARG n 1 15 ILE n 1 16 GLU n 1 17 ILE n 1 18 PRO n 1 19 ALA n 1 20 ASP n 1 21 ILE n 1 22 ALA n 1 23 ALA n 1 24 ASN n 1 25 GLU n 1 26 ALA n 1 27 LEU n 1 28 LYS n 1 29 VAL n 1 30 ARG n 1 31 LEU n 1 32 LEU n 1 33 GLU n 1 34 THR n 1 35 GLU n 1 36 GLY n 1 37 VAL n 1 38 LYS n 1 39 GLU n 1 40 VAL n 1 41 LEU n 1 42 ILE n 1 43 ALA n 1 44 GLU n 1 45 GLU n 1 46 GLU n 1 47 HIS n 1 48 SER n 1 49 ALA n 1 50 TYR n 1 51 VAL n 1 52 LYS n 1 53 ILE n 1 54 ASP n 1 55 SER n 1 56 LYS n 1 57 VAL n 1 58 THR n 1 59 ASN n 1 60 ARG n 1 61 PHE n 1 62 GLU n 1 63 VAL n 1 64 GLU n 1 65 GLN n 1 66 ALA n 1 67 ILE n 1 68 ARG n 1 69 GLN n 1 70 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B21_00379, E. coli, ECBD_3234, ECD_00375, yajR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'B / BL21-DE3' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 469008 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET-28a _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C6EL42_ECOBD _struct_ref.pdbx_db_accession C6EL42 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MKEPPYVSSLRIEIPADIAANEALKVRLLETEGVKEVLIAEEEHSAYVKIDSKVTNRFEVEQAIRQA _struct_ref.pdbx_align_begin 388 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4Q2L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 70 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C6EL42 _struct_ref_seq.db_align_beg 388 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 454 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 67 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4Q2L GLY A 1 ? UNP C6EL42 ? ? 'expression tag' -2 1 1 4Q2L SER A 2 ? UNP C6EL42 ? ? 'expression tag' -1 2 1 4Q2L HIS A 3 ? UNP C6EL42 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4Q2L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M HEPES (pH 7.5), 50mM CdSO4, 1.0M sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2012-10-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9500 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9500 # _reflns.entry_id 4Q2L _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.07 _reflns.number_obs 31739 _reflns.number_all 32553 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.07 _reflns_shell.d_res_low 1.11 _reflns_shell.percent_possible_all 95.3 _reflns_shell.Rmerge_I_obs 0.889 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3147 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4Q2L _refine.ls_number_reflns_obs 31032 _refine.ls_number_reflns_all 32553 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.81 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.038 _refine.ls_d_res_high 1.071 _refine.ls_percent_reflns_obs 97.45 _refine.ls_R_factor_obs 0.1839 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1831 _refine.ls_R_factor_R_free 0.1986 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1676 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.10 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.07 _refine.pdbx_overall_phase_error 17.61 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 506 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 605 _refine_hist.d_res_high 1.071 _refine_hist.d_res_low 28.038 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 584 ? 'X-RAY DIFFRACTION' f_angle_d 1.242 ? ? 803 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.151 ? ? 244 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.086 ? ? 95 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 108 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 12 1.071 1.1028 2480 0.2743 95.00 0.2894 . . 138 . . . . 'X-RAY DIFFRACTION' 12 1.1028 1.1384 2498 0.2050 96.00 0.2425 . . 136 . . . . 'X-RAY DIFFRACTION' 12 1.1384 1.1791 2502 0.1711 96.00 0.2203 . . 138 . . . . 'X-RAY DIFFRACTION' 12 1.1791 1.2263 2542 0.1666 97.00 0.1852 . . 131 . . . . 'X-RAY DIFFRACTION' 12 1.2263 1.2821 2540 0.1881 97.00 0.2193 . . 141 . . . . 'X-RAY DIFFRACTION' 12 1.2821 1.3497 2583 0.1558 97.00 0.1663 . . 142 . . . . 'X-RAY DIFFRACTION' 12 1.3497 1.4342 2576 0.1532 99.00 0.1800 . . 134 . . . . 'X-RAY DIFFRACTION' 12 1.4342 1.5450 2614 0.1519 98.00 0.1693 . . 139 . . . . 'X-RAY DIFFRACTION' 12 1.5450 1.7004 2600 0.1516 99.00 0.1728 . . 146 . . . . 'X-RAY DIFFRACTION' 12 1.7004 1.9464 2652 0.1707 99.00 0.1823 . . 148 . . . . 'X-RAY DIFFRACTION' 12 1.9464 2.4521 2677 0.1856 100.00 0.1550 . . 147 . . . . 'X-RAY DIFFRACTION' 12 2.4521 28.0472 2763 0.2023 98.00 0.2434 . . 136 . . . . # _struct.entry_id 4Q2L _struct.title 'Atomic Resolution Structure of the E. coli YajR Transporter YAM Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4Q2L _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'Feredoxin Fold, transporter, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 24 ? GLU A 33 ? ASN A 21 GLU A 30 1 ? 10 HELX_P HELX_P2 2 ASN A 59 ? GLN A 69 ? ASN A 56 GLN A 66 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 16 OE2 A ? ? 1_555 E CD . CD ? ? A GLU 13 A CD 104 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc2 metalc ? ? A GLU 46 O ? ? ? 1_555 E CD . CD ? ? A GLU 43 A CD 104 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc3 metalc ? ? A HIS 47 ND1 ? ? ? 1_555 D CD . CD ? ? A HIS 44 A CD 103 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc4 metalc ? ? B ACY . O ? ? ? 1_555 D CD . CD ? ? A ACY 101 A CD 103 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc5 metalc ? ? D CD . CD ? ? ? 1_555 F HOH . O ? ? A CD 103 A HOH 1039 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc6 metalc ? ? D CD . CD ? ? ? 1_555 F HOH . O ? ? A CD 103 A HOH 1040 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc7 metalc ? ? E CD . CD ? ? ? 1_555 F HOH . O ? ? A CD 104 A HOH 1035 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc8 metalc ? ? E CD . CD ? ? ? 1_555 F HOH . O ? ? A CD 104 A HOH 1088 1_555 ? ? ? ? ? ? ? 2.602 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? GLU A 16 ? VAL A 7 GLU A 13 A 2 SER A 48 ? ASP A 54 ? SER A 45 ASP A 51 A 3 VAL A 37 ? ALA A 43 ? VAL A 34 ALA A 40 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 15 ? N ILE A 12 O ALA A 49 ? O ALA A 46 A 2 3 O LYS A 52 ? O LYS A 49 N LYS A 38 ? N LYS A 35 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACY 101 ? 7 'BINDING SITE FOR RESIDUE ACY A 101' AC2 Software A ACY 102 ? 4 'BINDING SITE FOR RESIDUE ACY A 102' AC3 Software A CD 103 ? 5 'BINDING SITE FOR RESIDUE CD A 103' AC4 Software A CD 104 ? 5 'BINDING SITE FOR RESIDUE CD A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLU A 33 ? GLU A 30 . ? 8_475 ? 2 AC1 7 GLU A 44 ? GLU A 41 . ? 1_555 ? 3 AC1 7 GLU A 45 ? GLU A 42 . ? 1_555 ? 4 AC1 7 HIS A 47 ? HIS A 44 . ? 1_555 ? 5 AC1 7 CD D . ? CD A 103 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH A 1051 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 1074 . ? 1_555 ? 8 AC2 4 SER A 55 ? SER A 52 . ? 1_555 ? 9 AC2 4 LYS A 56 ? LYS A 53 . ? 3_655 ? 10 AC2 4 ASN A 59 ? ASN A 56 . ? 1_555 ? 11 AC2 4 HOH F . ? HOH A 1065 . ? 1_555 ? 12 AC3 5 GLU A 33 ? GLU A 30 . ? 8_475 ? 13 AC3 5 HIS A 47 ? HIS A 44 . ? 1_555 ? 14 AC3 5 ACY B . ? ACY A 101 . ? 1_555 ? 15 AC3 5 HOH F . ? HOH A 1039 . ? 1_555 ? 16 AC3 5 HOH F . ? HOH A 1040 . ? 1_555 ? 17 AC4 5 GLU A 16 ? GLU A 13 . ? 1_555 ? 18 AC4 5 GLU A 45 ? GLU A 42 . ? 4_575 ? 19 AC4 5 GLU A 46 ? GLU A 43 . ? 1_555 ? 20 AC4 5 HOH F . ? HOH A 1035 . ? 1_555 ? 21 AC4 5 HOH F . ? HOH A 1088 . ? 1_555 ? # _database_PDB_matrix.entry_id 4Q2L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4Q2L _atom_sites.fract_transf_matrix[1][1] 0.028596 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016358 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014206 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 LYS 5 2 ? ? ? A . n A 1 6 GLU 6 3 ? ? ? A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 PRO 8 5 5 PRO PRO A . n A 1 9 TYR 9 6 6 TYR TYR A . n A 1 10 VAL 10 7 7 VAL VAL A . n A 1 11 SER 11 8 8 SER SER A . n A 1 12 SER 12 9 9 SER SER A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 ARG 14 11 11 ARG ARG A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 GLU 16 13 13 GLU GLU A . n A 1 17 ILE 17 14 14 ILE ILE A . n A 1 18 PRO 18 15 15 PRO PRO A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 ALA 23 20 20 ALA ALA A . n A 1 24 ASN 24 21 21 ASN ASN A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 LYS 28 25 25 LYS LYS A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 GLY 36 33 33 GLY GLY A . n A 1 37 VAL 37 34 34 VAL VAL A . n A 1 38 LYS 38 35 35 LYS LYS A . n A 1 39 GLU 39 36 36 GLU GLU A . n A 1 40 VAL 40 37 37 VAL VAL A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ILE 42 39 39 ILE ILE A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 HIS 47 44 44 HIS HIS A . n A 1 48 SER 48 45 45 SER SER A . n A 1 49 ALA 49 46 46 ALA ALA A . n A 1 50 TYR 50 47 47 TYR TYR A . n A 1 51 VAL 51 48 48 VAL VAL A . n A 1 52 LYS 52 49 49 LYS LYS A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 ASP 54 51 51 ASP ASP A . n A 1 55 SER 55 52 52 SER SER A . n A 1 56 LYS 56 53 53 LYS LYS A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 THR 58 55 55 THR THR A . n A 1 59 ASN 59 56 56 ASN ASN A . n A 1 60 ARG 60 57 57 ARG ARG A . n A 1 61 PHE 61 58 58 PHE PHE A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 VAL 63 60 60 VAL VAL A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 GLN 65 62 62 GLN GLN A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 ILE 67 64 64 ILE ILE A . n A 1 68 ARG 68 65 65 ARG ARG A . n A 1 69 GLN 69 66 66 GLN GLN A . n A 1 70 ALA 70 67 67 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY 1 101 3004 ACY ACY A . C 2 ACY 1 102 3005 ACY ACY A . D 3 CD 1 103 2001 CD CD A . E 3 CD 1 104 2002 CD CD A . F 4 HOH 1 1001 1001 HOH HOH A . F 4 HOH 2 1002 1002 HOH HOH A . F 4 HOH 3 1003 1003 HOH HOH A . F 4 HOH 4 1004 1004 HOH HOH A . F 4 HOH 5 1005 1005 HOH HOH A . F 4 HOH 6 1006 1006 HOH HOH A . F 4 HOH 7 1007 1007 HOH HOH A . F 4 HOH 8 1008 1008 HOH HOH A . F 4 HOH 9 1009 1009 HOH HOH A . F 4 HOH 10 1010 1010 HOH HOH A . F 4 HOH 11 1011 1011 HOH HOH A . F 4 HOH 12 1012 1012 HOH HOH A . F 4 HOH 13 1013 1013 HOH HOH A . F 4 HOH 14 1014 1014 HOH HOH A . F 4 HOH 15 1015 1015 HOH HOH A . F 4 HOH 16 1016 1016 HOH HOH A . F 4 HOH 17 1017 1017 HOH HOH A . F 4 HOH 18 1018 1018 HOH HOH A . F 4 HOH 19 1019 1019 HOH HOH A . F 4 HOH 20 1020 1020 HOH HOH A . F 4 HOH 21 1021 1021 HOH HOH A . F 4 HOH 22 1022 1022 HOH HOH A . F 4 HOH 23 1023 1023 HOH HOH A . F 4 HOH 24 1024 1024 HOH HOH A . F 4 HOH 25 1025 1025 HOH HOH A . F 4 HOH 26 1026 1026 HOH HOH A . F 4 HOH 27 1027 1027 HOH HOH A . F 4 HOH 28 1028 1028 HOH HOH A . F 4 HOH 29 1029 1029 HOH HOH A . F 4 HOH 30 1030 1030 HOH HOH A . F 4 HOH 31 1031 1031 HOH HOH A . F 4 HOH 32 1032 1032 HOH HOH A . F 4 HOH 33 1033 1033 HOH HOH A . F 4 HOH 34 1034 1034 HOH HOH A . F 4 HOH 35 1035 1035 HOH HOH A . F 4 HOH 36 1036 1036 HOH HOH A . F 4 HOH 37 1037 1037 HOH HOH A . F 4 HOH 38 1038 1038 HOH HOH A . F 4 HOH 39 1039 1039 HOH HOH A . F 4 HOH 40 1040 1040 HOH HOH A . F 4 HOH 41 1041 1041 HOH HOH A . F 4 HOH 42 1042 1042 HOH HOH A . F 4 HOH 43 1043 1043 HOH HOH A . F 4 HOH 44 1044 1044 HOH HOH A . F 4 HOH 45 1045 1045 HOH HOH A . F 4 HOH 46 1046 1046 HOH HOH A . F 4 HOH 47 1047 1047 HOH HOH A . F 4 HOH 48 1048 1048 HOH HOH A . F 4 HOH 49 1049 1049 HOH HOH A . F 4 HOH 50 1050 1050 HOH HOH A . F 4 HOH 51 1051 1051 HOH HOH A . F 4 HOH 52 1052 1052 HOH HOH A . F 4 HOH 53 1053 1053 HOH HOH A . F 4 HOH 54 1054 1054 HOH HOH A . F 4 HOH 55 1055 1055 HOH HOH A . F 4 HOH 56 1056 1056 HOH HOH A . F 4 HOH 57 1057 1057 HOH HOH A . F 4 HOH 58 1058 1058 HOH HOH A . F 4 HOH 59 1059 1059 HOH HOH A . F 4 HOH 60 1060 1060 HOH HOH A . F 4 HOH 61 1061 1061 HOH HOH A . F 4 HOH 62 1062 1062 HOH HOH A . F 4 HOH 63 1063 1063 HOH HOH A . F 4 HOH 64 1064 1064 HOH HOH A . F 4 HOH 65 1065 1065 HOH HOH A . F 4 HOH 66 1066 1066 HOH HOH A . F 4 HOH 67 1067 1067 HOH HOH A . F 4 HOH 68 1068 1068 HOH HOH A . F 4 HOH 69 1069 1069 HOH HOH A . F 4 HOH 70 1070 1070 HOH HOH A . F 4 HOH 71 1071 1071 HOH HOH A . F 4 HOH 72 1072 1072 HOH HOH A . F 4 HOH 73 1073 1073 HOH HOH A . F 4 HOH 74 1074 1074 HOH HOH A . F 4 HOH 75 1075 1075 HOH HOH A . F 4 HOH 76 1076 1076 HOH HOH A . F 4 HOH 77 1077 1077 HOH HOH A . F 4 HOH 78 1078 1078 HOH HOH A . F 4 HOH 79 1079 1079 HOH HOH A . F 4 HOH 80 1080 1080 HOH HOH A . F 4 HOH 81 1081 1081 HOH HOH A . F 4 HOH 82 1082 1082 HOH HOH A . F 4 HOH 83 1083 1083 HOH HOH A . F 4 HOH 84 1084 1084 HOH HOH A . F 4 HOH 85 1085 1085 HOH HOH A . F 4 HOH 86 1086 1086 HOH HOH A . F 4 HOH 87 1087 1087 HOH HOH A . F 4 HOH 88 1088 1088 HOH HOH A . F 4 HOH 89 1089 1089 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1210 ? 1 MORE -29 ? 1 'SSA (A^2)' 7810 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_575 x,-y+2,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 122.2680000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1037 ? F HOH . 2 1 A HOH 1045 ? F HOH . 3 1 A HOH 1078 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 A A GLU 16 ? A GLU 13 ? 1_555 CD ? E CD . ? A CD 104 ? 1_555 O ? A GLU 46 ? A GLU 43 ? 1_555 89.2 ? 2 OE2 A A GLU 16 ? A GLU 13 ? 1_555 CD ? E CD . ? A CD 104 ? 1_555 O ? F HOH . ? A HOH 1035 ? 1_555 86.1 ? 3 O ? A GLU 46 ? A GLU 43 ? 1_555 CD ? E CD . ? A CD 104 ? 1_555 O ? F HOH . ? A HOH 1035 ? 1_555 89.3 ? 4 OE2 A A GLU 16 ? A GLU 13 ? 1_555 CD ? E CD . ? A CD 104 ? 1_555 O ? F HOH . ? A HOH 1088 ? 1_555 80.3 ? 5 O ? A GLU 46 ? A GLU 43 ? 1_555 CD ? E CD . ? A CD 104 ? 1_555 O ? F HOH . ? A HOH 1088 ? 1_555 165.7 ? 6 O ? F HOH . ? A HOH 1035 ? 1_555 CD ? E CD . ? A CD 104 ? 1_555 O ? F HOH . ? A HOH 1088 ? 1_555 99.6 ? 7 ND1 ? A HIS 47 ? A HIS 44 ? 1_555 CD ? D CD . ? A CD 103 ? 1_555 O ? B ACY . ? A ACY 101 ? 1_555 141.5 ? 8 ND1 ? A HIS 47 ? A HIS 44 ? 1_555 CD ? D CD . ? A CD 103 ? 1_555 O ? F HOH . ? A HOH 1039 ? 1_555 95.7 ? 9 O ? B ACY . ? A ACY 101 ? 1_555 CD ? D CD . ? A CD 103 ? 1_555 O ? F HOH . ? A HOH 1039 ? 1_555 83.8 ? 10 ND1 ? A HIS 47 ? A HIS 44 ? 1_555 CD ? D CD . ? A CD 103 ? 1_555 O ? F HOH . ? A HOH 1040 ? 1_555 89.2 ? 11 O ? B ACY . ? A ACY 101 ? 1_555 CD ? D CD . ? A CD 103 ? 1_555 O ? F HOH . ? A HOH 1040 ? 1_555 88.4 ? 12 O ? F HOH . ? A HOH 1039 ? 1_555 CD ? D CD . ? A CD 103 ? 1_555 O ? F HOH . ? A HOH 1040 ? 1_555 172.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-09 2 'Structure model' 1 1 2022-08-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' pdbx_struct_conn_angle 4 2 'Structure model' struct_conn 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_database_2.pdbx_DOI' 6 2 'Structure model' '_database_2.pdbx_database_accession' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.value' 22 2 'Structure model' '_struct_conn.pdbx_dist_value' 23 2 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 2 'Structure model' '_struct_ref_seq_dif.details' 36 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASES phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 1058 ? ? O A HOH 1083 ? ? 2.08 2 1 OE1 A GLU 61 ? A O A HOH 1081 ? ? 2.08 3 1 O A TYR 6 ? ? OG A SER 52 ? ? 2.10 4 1 NZ A LYS 35 ? ? O A HOH 1084 ? ? 2.12 5 1 NZ A LYS 25 ? B O A HOH 1042 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 42 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 B _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1082 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_575 _pdbx_validate_symm_contact.dist 2.14 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 141.26 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation 12.86 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A LYS 2 ? A LYS 5 6 1 Y 1 A GLU 3 ? A GLU 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 'CADMIUM ION' CD 4 water HOH #