HEADER LYASE 11-APR-14 4Q3F TITLE HUMAN D-DT COMPLEXED WITH TARTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-DOPACHROME DECARBOXYLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: D-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE II; COMPND 5 EC: 4.1.1.84; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TAUTOMERASE, CD74, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.RAJASEKARAN,E.LOLIS REVDAT 4 28-FEB-24 4Q3F 1 REMARK REVDAT 3 12-NOV-14 4Q3F 1 JRNL REVDAT 2 30-JUL-14 4Q3F 1 JRNL REVDAT 1 04-JUN-14 4Q3F 0 JRNL AUTH D.RAJASEKARAN,S.ZIEROW,M.SYED,R.BUCALA,V.BHANDARI,E.J.LOLIS JRNL TITL TARGETING DISTINCT TAUTOMERASE SITES OF D-DT AND MIF WITH A JRNL TITL 2 SINGLE MOLECULE FOR INHIBITION OF NEUTROPHIL LUNG JRNL TITL 3 RECRUITMENT. JRNL REF FASEB J. V. 28 4961 2014 JRNL REFN ISSN 0892-6638 JRNL PMID 25016026 JRNL DOI 10.1096/FJ.14-256636 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 26344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.517 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2733 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2676 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3705 ; 1.769 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6150 ; 0.907 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.300 ;23.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;12.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3066 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 1.047 ; 1.197 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1400 ; 1.044 ; 1.196 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1746 ; 1.508 ; 1.789 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1747 ; 1.508 ; 1.790 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1332 ; 1.715 ; 1.387 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1329 ; 1.698 ; 1.384 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1958 ; 2.612 ; 2.009 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3372 ; 5.376 ;11.851 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3369 ; 5.375 ;11.839 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM TARTRATE DIBASIC REMARK 280 DIHYDRATE AND 20% W/V POLYETHYLENE GLYCOL 3,350, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 41.86500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -72.51231 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 83.73000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -41.86500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -72.51231 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 41.86500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -72.51231 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 387 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 437 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 488 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 397 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 356 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 399 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 315 O HOH A 492 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 110 43.55 38.69 REMARK 500 THR A 112 -157.91 -133.40 REMARK 500 ILE B 110 46.28 37.58 REMARK 500 THR B 112 -159.90 -131.97 REMARK 500 THR C 112 -158.13 -133.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA C 201 DBREF 4Q3F A 1 117 UNP P30046 DOPD_HUMAN 2 118 DBREF 4Q3F B 1 117 UNP P30046 DOPD_HUMAN 2 118 DBREF 4Q3F C 1 117 UNP P30046 DOPD_HUMAN 2 118 SEQRES 1 A 117 PRO PHE LEU GLU LEU ASP THR ASN LEU PRO ALA ASN ARG SEQRES 2 A 117 VAL PRO ALA GLY LEU GLU LYS ARG LEU CYS ALA ALA ALA SEQRES 3 A 117 ALA SER ILE LEU GLY LYS PRO ALA ASP ARG VAL ASN VAL SEQRES 4 A 117 THR VAL ARG PRO GLY LEU ALA MET ALA LEU SER GLY SER SEQRES 5 A 117 THR GLU PRO CYS ALA GLN LEU SER ILE SER SER ILE GLY SEQRES 6 A 117 VAL VAL GLY THR ALA GLU ASP ASN ARG SER HIS SER ALA SEQRES 7 A 117 HIS PHE PHE GLU PHE LEU THR LYS GLU LEU ALA LEU GLY SEQRES 8 A 117 GLN ASP ARG ILE LEU ILE ARG PHE PHE PRO LEU GLU SER SEQRES 9 A 117 TRP GLN ILE GLY LYS ILE GLY THR VAL MET THR PHE LEU SEQRES 1 B 117 PRO PHE LEU GLU LEU ASP THR ASN LEU PRO ALA ASN ARG SEQRES 2 B 117 VAL PRO ALA GLY LEU GLU LYS ARG LEU CYS ALA ALA ALA SEQRES 3 B 117 ALA SER ILE LEU GLY LYS PRO ALA ASP ARG VAL ASN VAL SEQRES 4 B 117 THR VAL ARG PRO GLY LEU ALA MET ALA LEU SER GLY SER SEQRES 5 B 117 THR GLU PRO CYS ALA GLN LEU SER ILE SER SER ILE GLY SEQRES 6 B 117 VAL VAL GLY THR ALA GLU ASP ASN ARG SER HIS SER ALA SEQRES 7 B 117 HIS PHE PHE GLU PHE LEU THR LYS GLU LEU ALA LEU GLY SEQRES 8 B 117 GLN ASP ARG ILE LEU ILE ARG PHE PHE PRO LEU GLU SER SEQRES 9 B 117 TRP GLN ILE GLY LYS ILE GLY THR VAL MET THR PHE LEU SEQRES 1 C 117 PRO PHE LEU GLU LEU ASP THR ASN LEU PRO ALA ASN ARG SEQRES 2 C 117 VAL PRO ALA GLY LEU GLU LYS ARG LEU CYS ALA ALA ALA SEQRES 3 C 117 ALA SER ILE LEU GLY LYS PRO ALA ASP ARG VAL ASN VAL SEQRES 4 C 117 THR VAL ARG PRO GLY LEU ALA MET ALA LEU SER GLY SER SEQRES 5 C 117 THR GLU PRO CYS ALA GLN LEU SER ILE SER SER ILE GLY SEQRES 6 C 117 VAL VAL GLY THR ALA GLU ASP ASN ARG SER HIS SER ALA SEQRES 7 C 117 HIS PHE PHE GLU PHE LEU THR LYS GLU LEU ALA LEU GLY SEQRES 8 C 117 GLN ASP ARG ILE LEU ILE ARG PHE PHE PRO LEU GLU SER SEQRES 9 C 117 TRP GLN ILE GLY LYS ILE GLY THR VAL MET THR PHE LEU HET TLA A 201 10 HET TLA B 201 10 HET TLA C 201 10 HETNAM TLA L(+)-TARTARIC ACID FORMUL 4 TLA 3(C4 H6 O6) FORMUL 7 HOH *544(H2 O) HELIX 1 1 PRO A 10 VAL A 14 5 5 HELIX 2 2 GLY A 17 GLY A 31 1 15 HELIX 3 3 PRO A 33 VAL A 37 5 5 HELIX 4 4 THR A 69 ALA A 89 1 21 HELIX 5 5 GLY A 91 ASP A 93 5 3 HELIX 6 6 GLU A 103 GLN A 106 5 4 HELIX 7 7 THR A 115 LEU A 117 5 3 HELIX 8 8 PRO B 10 VAL B 14 5 5 HELIX 9 9 GLY B 17 GLY B 31 1 15 HELIX 10 10 PRO B 33 VAL B 37 5 5 HELIX 11 11 THR B 69 ALA B 89 1 21 HELIX 12 12 GLY B 91 ASP B 93 5 3 HELIX 13 13 GLU B 103 GLN B 106 5 4 HELIX 14 14 THR B 115 LEU B 117 5 3 HELIX 15 15 PRO C 10 VAL C 14 5 5 HELIX 16 16 GLY C 17 GLY C 31 1 15 HELIX 17 17 PRO C 33 VAL C 37 5 5 HELIX 18 18 THR C 69 ALA C 89 1 21 HELIX 19 19 GLY C 91 ASP C 93 5 3 HELIX 20 20 GLU C 103 GLN C 106 5 4 HELIX 21 21 THR C 115 LEU C 117 5 3 SHEET 1 A 4 ASN A 38 ARG A 42 0 SHEET 2 A 4 PHE A 2 THR A 7 1 N LEU A 5 O THR A 40 SHEET 3 A 4 ALA A 57 ILE A 64 -1 O SER A 62 N PHE A 2 SHEET 4 A 4 ILE A 95 LEU A 102 1 O LEU A 96 N LEU A 59 SHEET 1 B 2 GLY A 108 LYS A 109 0 SHEET 2 B 2 THR A 112 VAL A 113 -1 O THR A 112 N LYS A 109 SHEET 1 C 4 ASN B 38 ARG B 42 0 SHEET 2 C 4 PHE B 2 THR B 7 1 N LEU B 5 O THR B 40 SHEET 3 C 4 ALA B 57 ILE B 64 -1 O SER B 62 N PHE B 2 SHEET 4 C 4 ILE B 95 LEU B 102 1 O PHE B 100 N ILE B 61 SHEET 1 D 2 GLY B 108 LYS B 109 0 SHEET 2 D 2 THR B 112 VAL B 113 -1 O THR B 112 N LYS B 109 SHEET 1 E 4 ASN C 38 ARG C 42 0 SHEET 2 E 4 PHE C 2 THR C 7 1 N LEU C 5 O THR C 40 SHEET 3 E 4 ALA C 57 ILE C 64 -1 O SER C 62 N PHE C 2 SHEET 4 E 4 ILE C 95 LEU C 102 1 O PHE C 100 N ILE C 61 SHEET 1 F 2 GLY C 108 LYS C 109 0 SHEET 2 F 2 THR C 112 VAL C 113 -1 O THR C 112 N LYS C 109 SITE 1 AC1 11 PRO A 1 PHE A 2 LYS A 32 ARG A 36 SITE 2 AC1 11 SER A 63 ILE A 64 LYS A 109 MET A 114 SITE 3 AC1 11 HOH A 401 HOH A 474 HOH A 484 SITE 1 AC2 11 PRO B 1 PHE B 2 LYS B 32 ARG B 36 SITE 2 AC2 11 SER B 63 ILE B 64 HOH B 357 HOH B 387 SITE 3 AC2 11 HOH B 404 HOH B 443 HOH B 489 SITE 1 AC3 8 PRO C 1 PHE C 2 LYS C 32 ARG C 36 SITE 2 AC3 8 SER C 63 ILE C 64 HOH C 406 HOH C 436 CRYST1 83.730 83.730 40.560 90.00 90.00 120.00 P 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011943 0.006895 0.000000 0.00000 SCALE2 0.000000 0.013791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024655 0.00000