HEADER HYDROLASE 11-APR-14 4Q3N TITLE CRYSTAL STRUCTURE OF MGS-M5, A LACTATE DEHYDROGENASE ENZYME FROM A TITLE 2 MEDEE BASIN DEEP-SEA METAGENOME LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: MGS-M5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 GENE: MGS-M5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15-TV LIC KEYWDS METAGENOME, METAGENOMIC LIBRARY, ROSSMANN FOLD, DEHYDROGENASE, KEYWDS 2 OXIDOREDUCTASE, L-LACTATE DEHYDROGENASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,X.XU,H.CUI,M.ALCAIDE,M.FERRER,A.SAVCHENKO REVDAT 3 20-SEP-23 4Q3N 1 REMARK LINK REVDAT 2 18-MAR-15 4Q3N 1 JRNL REVDAT 1 25-FEB-15 4Q3N 0 JRNL AUTH M.ALCAIDE,P.J.STOGIOS,A.LAFRAYA,A.TCHIGVINTSEV,R.FLICK, JRNL AUTH 2 R.BARGIELA,T.N.CHERNIKOVA,O.N.REVA,T.HAI,C.C.LEGGEWIE, JRNL AUTH 3 N.KATZKE,V.LA CONO,R.MATESANZ,M.JEBBAR,K.E.JAEGER, JRNL AUTH 4 M.M.YAKIMOV,A.F.YAKUNIN,P.N.GOLYSHIN,O.V.GOLYSHINA, JRNL AUTH 5 A.SAVCHENKO,M.FERRER JRNL TITL PRESSURE ADAPTATION IS LINKED TO THERMAL ADAPTATION IN JRNL TITL 2 SALT-SATURATED MARINE HABITATS. JRNL REF ENVIRON MICROBIOL V. 17 332 2015 JRNL REFN ISSN 1462-2912 JRNL PMID 25330254 JRNL DOI 10.1111/1462-2920.12660 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1538) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3149 - 4.7409 1.00 2308 154 0.1572 0.1779 REMARK 3 2 4.7409 - 3.7645 1.00 2189 147 0.1177 0.1501 REMARK 3 3 3.7645 - 3.2891 1.00 2151 143 0.1298 0.1861 REMARK 3 4 3.2891 - 2.9886 1.00 2149 144 0.1451 0.1772 REMARK 3 5 2.9886 - 2.7745 1.00 2156 142 0.1433 0.1711 REMARK 3 6 2.7745 - 2.6109 1.00 2118 142 0.1480 0.2006 REMARK 3 7 2.6109 - 2.4802 1.00 2125 142 0.1497 0.1952 REMARK 3 8 2.4802 - 2.3723 1.00 2112 141 0.1479 0.1991 REMARK 3 9 2.3723 - 2.2810 1.00 2117 141 0.1509 0.1956 REMARK 3 10 2.2810 - 2.2023 1.00 2098 141 0.1580 0.2024 REMARK 3 11 2.2023 - 2.1334 1.00 2122 141 0.1542 0.1951 REMARK 3 12 2.1334 - 2.0725 1.00 2101 140 0.1733 0.2107 REMARK 3 13 2.0725 - 2.0179 1.00 2085 139 0.1883 0.2230 REMARK 3 14 2.0179 - 1.9687 1.00 2116 141 0.2118 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2617 REMARK 3 ANGLE : 1.489 3528 REMARK 3 CHIRALITY : 0.092 397 REMARK 3 PLANARITY : 0.008 453 REMARK 3 DIHEDRAL : 13.276 993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 1:92 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0787 37.9186 -31.9811 REMARK 3 T TENSOR REMARK 3 T11: 0.1909 T22: 0.2323 REMARK 3 T33: 0.2141 T12: -0.0488 REMARK 3 T13: 0.0141 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.0666 L22: 3.6776 REMARK 3 L33: 2.5988 L12: -0.0399 REMARK 3 L13: -0.2964 L23: -0.9349 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.2401 S13: -0.1204 REMARK 3 S21: 0.2919 S22: 0.0760 S23: 0.1630 REMARK 3 S31: 0.1893 S32: -0.1125 S33: -0.0618 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 93:194 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6958 26.8371 -35.1486 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.1915 REMARK 3 T33: 0.2108 T12: -0.0162 REMARK 3 T13: -0.0217 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.3666 L22: 1.1957 REMARK 3 L33: 1.6402 L12: 1.0144 REMARK 3 L13: -1.4066 L23: -0.5144 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.3375 S13: -0.1952 REMARK 3 S21: 0.0975 S22: 0.0304 S23: 0.0718 REMARK 3 S31: 0.2202 S32: 0.0904 S33: 0.0187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 195:314 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3670 25.5640 -36.0861 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.2218 REMARK 3 T33: 0.2264 T12: 0.0038 REMARK 3 T13: -0.0094 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.5402 L22: 1.2038 REMARK 3 L33: 1.7391 L12: -0.2449 REMARK 3 L13: 0.1024 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.1417 S13: -0.2208 REMARK 3 S21: 0.0681 S22: 0.0427 S23: -0.0460 REMARK 3 S31: 0.3082 S32: 0.2440 S33: -0.0187 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31973 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1LDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 0.2 M CALCIUM REMARK 280 ACETATE, 9% PEG 8K, TRYPSIN IN 1/70 MOLAR RATIO PROTEIN:TRYPSIN REMARK 280 CRYOPROTECTANT: 12% GLYCEROL THEN PARATONE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 46.40900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.90200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.95100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.40900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.85300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 152.85300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.40900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.95100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 46.40900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.90200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 46.40900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 101.90200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 46.40900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 152.85300 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 50.95100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 46.40900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 50.95100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 152.85300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 46.40900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 46.40900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 101.90200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -46.40900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 46.40900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -101.90200 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 92.81800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 46.40900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 46.40900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -101.90200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 450 REMARK 450 SOURCE REMARK 450 THE SAMPLE HAS BEEN OBTAINED FROM LAKE MATAPAN DEEP-SEA AND REMARK 450 IDENTIFIED USING THE TECHNIQUE METAGENOME LIBRARY REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 51.69 -142.87 REMARK 500 THR A 11 50.29 -107.11 REMARK 500 ASN A 113 40.24 -147.95 REMARK 500 ASP A 164 122.00 -36.06 REMARK 500 LYS A 228 -32.55 77.38 REMARK 500 TYR A 231 -23.98 -158.44 REMARK 500 GLU A 266 130.85 -37.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 198 O REMARK 620 2 MET A 201 O 90.9 REMARK 620 3 ILE A 204 O 103.3 85.8 REMARK 620 4 HOH A 708 O 163.8 100.6 88.9 REMARK 620 5 HOH A 709 O 89.6 166.1 107.6 76.5 REMARK 620 6 HOH A 711 O 85.0 81.1 164.6 85.7 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q3K RELATED DB: PDB REMARK 900 RELATED ID: 4Q3L RELATED DB: PDB REMARK 900 RELATED ID: 4Q3M RELATED DB: PDB REMARK 900 RELATED ID: 4Q3O RELATED DB: PDB DBREF 4Q3N A 1 314 PDB 4Q3N 4Q3N 1 314 SEQRES 1 A 314 MET ARG ASN SER LYS VAL VAL VAL VAL GLY THR GLY PHE SEQRES 2 A 314 VAL GLY MET SER TYR ALA TYR ALA MET VAL ASN GLN GLY SEQRES 3 A 314 THR VAL GLU GLU LEU VAL LEU LEU ASP ILE ASP LYS ARG SEQRES 4 A 314 LYS ALA GLU GLY GLU ALA MET ASP LEU ASN HIS GLY LEU SEQRES 5 A 314 ALA PHE GLY PRO ARG LYS MET SER ILE LYS ALA GLY ASP SEQRES 6 A 314 TYR LYS ASP CYS LYS ASP ALA GLY LEU VAL VAL ILE THR SEQRES 7 A 314 ALA GLY VAL ASN GLN LYS GLU GLY GLU THR ARG ILE HIS SEQRES 8 A 314 LEU LEU LYS ARG ASN ALA GLU ILE ILE LYS THR VAL VAL SEQRES 9 A 314 LYS ASN ILE MET SER SER GLY PHE ASN GLY ILE LEU LEU SEQRES 10 A 314 VAL ALA SER ASN PRO VAL ASP VAL LEU ALA TYR VAL ALA SEQRES 11 A 314 TRP LYS GLU SER GLY LEU HIS HIS SER ARG VAL ILE GLY SEQRES 12 A 314 SER GLY THR SER LEU ASP THR ALA ARG LEU ARG TYR GLU SEQRES 13 A 314 ILE SER GLN TYR ILE HIS ILE ASP SER ARG ASN VAL HIS SEQRES 14 A 314 ALA TYR ILE LEU GLY GLU HIS GLY ASP SER GLU PHE VAL SEQRES 15 A 314 CYS TRP SER ASN ALA ASN VAL GLY ALA LYS PRO ILE ALA SEQRES 16 A 314 ASP VAL ILE ASP SER MET ASP GLU ILE SER PHE GLU ASP SEQRES 17 A 314 LEU GLU HIS ILE TYR LEU LYS VAL ARG ASP ALA ALA TYR SEQRES 18 A 314 GLU ILE ILE SER ARG LYS LYS ALA THR TYR TYR GLY ILE SEQRES 19 A 314 GLY MET ALA LEU VAL ARG ILE THR ALA ALA ILE PHE ASN SEQRES 20 A 314 ASN GLU ASN ARG ILE LEU PRO ILE SER VAL LEU ASN ASN SEQRES 21 A 314 GLY VAL TYR ASP CYS GLU ASP GLN VAL TYR ILE GLY LEU SEQRES 22 A 314 PRO ALA VAL LEU ASN LYS ASP GLY VAL HIS HIS ILE VAL SEQRES 23 A 314 LYS LEU LYS LEU ASN GLU LYS GLU ASN SER GLN LEU ASN SEQRES 24 A 314 ASN SER ALA ASN ILE LEU ARG LYS ASN LEU ASP ASP MET SEQRES 25 A 314 SER TYR HET NA A 401 1 HET CL A 402 1 HET CL A 403 1 HET ACT A 404 4 HET ACT A 405 4 HET ACT A 406 4 HET ACT A 407 4 HET ACT A 408 4 HET ACT A 409 4 HET PGE A 410 10 HET PGE A 411 10 HET GOL A 412 6 HET GOL A 413 6 HET GOL A 414 6 HET GOL A 415 6 HET GOL A 416 6 HET TRS A 417 8 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 2 NA NA 1+ FORMUL 3 CL 2(CL 1-) FORMUL 5 ACT 6(C2 H3 O2 1-) FORMUL 11 PGE 2(C6 H14 O4) FORMUL 13 GOL 5(C3 H8 O3) FORMUL 18 TRS C4 H12 N O3 1+ FORMUL 19 HOH *353(H2 O) HELIX 1 1 GLY A 12 GLY A 26 1 15 HELIX 2 2 ASP A 37 HIS A 50 1 14 HELIX 3 3 GLY A 51 GLY A 55 5 5 HELIX 4 4 ASP A 65 LYS A 70 5 6 HELIX 5 5 THR A 88 SER A 110 1 23 HELIX 6 6 PRO A 122 GLY A 135 1 14 HELIX 7 7 HIS A 137 SER A 139 5 3 HELIX 8 8 THR A 146 HIS A 162 1 17 HELIX 9 9 ASP A 164 ARG A 166 5 3 HELIX 10 10 TRP A 184 ASN A 186 5 3 HELIX 11 11 ILE A 194 MET A 201 1 8 HELIX 12 12 SER A 205 LYS A 228 1 24 HELIX 13 13 TYR A 231 ASN A 247 1 17 HELIX 14 14 ASN A 291 MET A 312 1 22 SHEET 1 A 6 SER A 60 ALA A 63 0 SHEET 2 A 6 GLU A 30 LEU A 34 1 N LEU A 31 O SER A 60 SHEET 3 A 6 LYS A 5 VAL A 9 1 N VAL A 8 O VAL A 32 SHEET 4 A 6 LEU A 74 ILE A 77 1 O VAL A 76 N VAL A 7 SHEET 5 A 6 ILE A 115 VAL A 118 1 O LEU A 117 N VAL A 75 SHEET 6 A 6 VAL A 141 GLY A 143 1 O ILE A 142 N LEU A 116 SHEET 1 B 3 VAL A 168 HIS A 169 0 SHEET 2 B 3 ASN A 188 VAL A 189 -1 O ASN A 188 N HIS A 169 SHEET 3 B 3 LYS A 192 PRO A 193 -1 O LYS A 192 N VAL A 189 SHEET 1 C 2 ILE A 172 LEU A 173 0 SHEET 2 C 2 PHE A 181 VAL A 182 -1 O PHE A 181 N LEU A 173 SHEET 1 D 3 ARG A 251 LEU A 258 0 SHEET 2 D 3 TYR A 270 ASN A 278 -1 O LEU A 277 N ARG A 251 SHEET 3 D 3 GLY A 281 ILE A 285 -1 O HIS A 283 N VAL A 276 LINK O ILE A 198 NA NA A 401 1555 1555 2.33 LINK O MET A 201 NA NA A 401 1555 1555 2.47 LINK O ILE A 204 NA NA A 401 1555 1555 2.26 LINK NA NA A 401 O HOH A 708 1555 1555 2.43 LINK NA NA A 401 O HOH A 709 1555 1555 2.34 LINK NA NA A 401 O HOH A 711 1555 1555 2.68 CISPEP 1 ASN A 121 PRO A 122 0 2.37 SITE 1 AC1 6 ILE A 198 MET A 201 ILE A 204 HOH A 708 SITE 2 AC1 6 HOH A 709 HOH A 711 SITE 1 AC2 3 ARG A 2 SER A 4 GLU A 30 SITE 1 AC3 3 LYS A 192 HIS A 284 HOH A 555 SITE 1 AC4 7 LYS A 58 ILE A 163 ASP A 164 GLU A 249 SITE 2 AC4 7 ASN A 250 HOH A 602 HOH A 679 SITE 1 AC5 5 SER A 4 ARG A 57 PHE A 246 ASN A 247 SITE 2 AC5 5 HOH A 569 SITE 1 AC6 2 GLN A 159 HOH A 847 SITE 1 AC7 4 LEU A 214 LYS A 215 ASP A 218 HOH A 576 SITE 1 AC8 5 ASN A 121 LEU A 148 HIS A 176 ILE A 234 SITE 2 AC8 5 HOH A 515 SITE 1 AC9 2 ASN A 113 ARG A 140 SITE 1 BC1 4 LYS A 105 LYS A 132 GLU A 133 GLY A 135 SITE 1 BC2 5 SER A 185 ASN A 186 PRO A 193 ASP A 196 SITE 2 BC2 5 LYS A 289 SITE 1 BC3 5 MET A 1 ASN A 3 ASP A 71 ALA A 72 SITE 2 BC3 5 HOH A 751 SITE 1 BC4 4 ASN A 291 GLU A 292 HOH A 543 HOH A 624 SITE 1 BC5 5 ASP A 35 LYS A 38 GLY A 64 ASP A 65 SITE 2 BC5 5 TYR A 66 SITE 1 BC6 3 GLY A 111 HOH A 707 HOH A 783 SITE 1 BC7 6 GLY A 261 TYR A 263 ASP A 264 CYS A 265 SITE 2 BC7 6 ASP A 267 HOH A 705 CRYST1 92.818 92.818 203.804 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010774 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004907 0.00000