HEADER HYDROLASE 14-APR-14 4Q4G TITLE STRUCTURE OF THE RESUSCITATION PROMOTING FACTOR INTERACTING PROTEIN TITLE 2 RIPA MUTATED AT C383 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN ENDOPEPTIDASE RIPA; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: MACROPHAGE INVASION AND INTRACELLULAR PERSISTENCE PROTEIN A, COMPND 5 RESUSCITATION-PROMOTING FACTOR INTERACTION PARTNER A, RPF-INTERACTING COMPND 6 PROTEIN A; COMPND 7 EC: 3.4.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RIPA, RV1477; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA, CELL WALL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BERISIO REVDAT 3 28-FEB-24 4Q4G 1 SEQADV REVDAT 2 24-SEP-14 4Q4G 1 JRNL REVDAT 1 10-SEP-14 4Q4G 0 JRNL AUTH F.SQUEGLIA,A.RUGGIERO,M.ROMANO,L.VITAGLIANO,R.BERISIO JRNL TITL MUTATIONAL AND STRUCTURAL STUDY OF RIPA, A KEY ENZYME IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS CELL DIVISION: EVIDENCE FOR THE JRNL TITL 3 L-TO-D INVERSION OF CONFIGURATION OF THE CATALYTIC CYSTEINE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2295 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25195744 JRNL DOI 10.1107/S1399004714013674 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 93643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.010 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1569 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1067 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2135 ; 2.174 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2594 ; 1.046 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 6.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;34.036 ;22.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 236 ;11.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 232 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1786 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1020 ; 1.806 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 427 ; 0.846 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1635 ; 2.735 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 549 ; 4.421 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 500 ; 6.267 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2636 ; 2.033 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 403 ;12.174 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2600 ; 4.098 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9343 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97211 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 AND 8 MG ML-1 PROTEIN CONCENTRATION, REMARK 280 RESPECTIVELY, AND 8% (V/V) 2-PROPANOL, 16% (W/V) PEG4000 IN 60 REMARK 280 MM SODIUM CITRATE TRIHYDRATE BUFFER, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.37850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.98900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.75250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.98900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.37850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.75250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 739 REMARK 465 ARG X 740 REMARK 465 ARG X 741 REMARK 465 ASN X 742 REMARK 465 ARG X 743 REMARK 465 ARG X 744 REMARK 465 GLY X 745 REMARK 465 SER X 746 REMARK 465 PRO X 747 REMARK 465 ALA X 748 REMARK 465 ARG X 749 REMARK 465 PRO X 750 REMARK 465 ALA X 751 REMARK 465 ALA X 752 REMARK 465 ARG X 753 REMARK 465 PHE X 754 REMARK 465 VAL X 755 REMARK 465 ARG X 756 REMARK 465 PRO X 757 REMARK 465 ALA X 758 REMARK 465 ILE X 759 REMARK 465 PRO X 760 REMARK 465 SER X 761 REMARK 465 ALA X 762 REMARK 465 LEU X 763 REMARK 465 SER X 764 REMARK 465 VAL X 765 REMARK 465 ALA X 766 REMARK 465 LEU X 767 REMARK 465 LEU X 768 REMARK 465 VAL X 769 REMARK 465 CYS X 770 REMARK 465 THR X 771 REMARK 465 PRO X 772 REMARK 465 GLY X 773 REMARK 465 LEU X 774 REMARK 465 ALA X 775 REMARK 465 THR X 776 REMARK 465 ALA X 777 REMARK 465 ASP X 778 REMARK 465 PRO X 779 REMARK 465 GLN X 780 REMARK 465 THR X 781 REMARK 465 ASP X 782 REMARK 465 THR X 783 REMARK 465 ILE X 784 REMARK 465 ALA X 785 REMARK 465 ALA X 786 REMARK 465 LEU X 787 REMARK 465 ILE X 788 REMARK 465 ALA X 789 REMARK 465 ASP X 790 REMARK 465 VAL X 791 REMARK 465 ALA X 792 REMARK 465 LYS X 793 REMARK 465 ALA X 794 REMARK 465 ASN X 795 REMARK 465 GLN X 796 REMARK 465 ARG X 797 REMARK 465 LEU X 798 REMARK 465 GLN X 799 REMARK 465 ASP X 800 REMARK 465 LEU X 801 REMARK 465 SER X 802 REMARK 465 ASP X 803 REMARK 465 GLU X 804 REMARK 465 VAL X 805 REMARK 465 GLN X 806 REMARK 465 ALA X 807 REMARK 465 GLU X 808 REMARK 465 GLN X 809 REMARK 465 GLU X 810 REMARK 465 SER X 811 REMARK 465 VAL X 812 REMARK 465 ASN X 813 REMARK 465 LYS X 814 REMARK 465 ALA X 815 REMARK 465 MET X 816 REMARK 465 VAL X 817 REMARK 465 ASP X 818 REMARK 465 VAL X 819 REMARK 465 GLU X 820 REMARK 465 THR X 821 REMARK 465 ALA X 822 REMARK 465 ARG X 823 REMARK 465 ASP X 824 REMARK 465 ASN X 825 REMARK 465 ALA X 826 REMARK 465 ALA X 827 REMARK 465 ALA X 828 REMARK 465 ALA X 829 REMARK 465 GLU X 830 REMARK 465 ASP X 831 REMARK 465 ASP X 832 REMARK 465 LEU X 833 REMARK 465 GLU X 834 REMARK 465 VAL X 835 REMARK 465 SER X 836 REMARK 465 GLN X 837 REMARK 465 ARG X 838 REMARK 465 ALA X 839 REMARK 465 VAL X 840 REMARK 465 LYS X 841 REMARK 465 ASP X 842 REMARK 465 ALA X 843 REMARK 465 ASN X 844 REMARK 465 ALA X 845 REMARK 465 ALA X 846 REMARK 465 ILE X 847 REMARK 465 ALA X 848 REMARK 465 ALA X 849 REMARK 465 ALA X 850 REMARK 465 GLN X 851 REMARK 465 HIS X 852 REMARK 465 ARG X 853 REMARK 465 PHE X 854 REMARK 465 ASP X 855 REMARK 465 THR X 856 REMARK 465 PHE X 857 REMARK 465 ALA X 858 REMARK 465 ALA X 859 REMARK 465 ALA X 860 REMARK 465 THR X 861 REMARK 465 TYR X 862 REMARK 465 MET X 863 REMARK 465 ASN X 864 REMARK 465 GLY X 865 REMARK 465 PRO X 866 REMARK 465 SER X 867 REMARK 465 VAL X 868 REMARK 465 SER X 869 REMARK 465 TYR X 870 REMARK 465 LEU X 871 REMARK 465 SER X 872 REMARK 465 ALA X 873 REMARK 465 SER X 874 REMARK 465 SER X 875 REMARK 465 PRO X 876 REMARK 465 ASP X 877 REMARK 465 GLU X 878 REMARK 465 ILE X 879 REMARK 465 ILE X 880 REMARK 465 ALA X 881 REMARK 465 THR X 882 REMARK 465 VAL X 883 REMARK 465 THR X 884 REMARK 465 ALA X 885 REMARK 465 ALA X 886 REMARK 465 LYS X 887 REMARK 465 THR X 888 REMARK 465 LEU X 889 REMARK 465 SER X 890 REMARK 465 ALA X 891 REMARK 465 SER X 892 REMARK 465 SER X 893 REMARK 465 GLN X 894 REMARK 465 ALA X 895 REMARK 465 VAL X 896 REMARK 465 MET X 897 REMARK 465 ALA X 898 REMARK 465 ASN X 899 REMARK 465 LEU X 900 REMARK 465 GLN X 901 REMARK 465 ARG X 902 REMARK 465 ALA X 903 REMARK 465 ARG X 904 REMARK 465 THR X 905 REMARK 465 GLU X 906 REMARK 465 ARG X 907 REMARK 465 VAL X 908 REMARK 465 ASN X 909 REMARK 465 THR X 910 REMARK 465 GLU X 911 REMARK 465 SER X 912 REMARK 465 ALA X 913 REMARK 465 ALA X 914 REMARK 465 ARG X 915 REMARK 465 LEU X 916 REMARK 465 ALA X 917 REMARK 465 LYS X 918 REMARK 465 GLN X 919 REMARK 465 LYS X 920 REMARK 465 ALA X 921 REMARK 465 ASP X 922 REMARK 465 LYS X 923 REMARK 465 ALA X 924 REMARK 465 ALA X 925 REMARK 465 ALA X 926 REMARK 465 ASP X 927 REMARK 465 ALA X 928 REMARK 465 LYS X 929 REMARK 465 ALA X 930 REMARK 465 SER X 931 REMARK 465 GLN X 932 REMARK 465 ASP X 933 REMARK 465 ALA X 934 REMARK 465 ALA X 935 REMARK 465 VAL X 936 REMARK 465 ALA X 937 REMARK 465 ALA X 938 REMARK 465 LEU X 939 REMARK 465 THR X 940 REMARK 465 GLU X 941 REMARK 465 THR X 942 REMARK 465 ARG X 943 REMARK 465 ARG X 944 REMARK 465 LYS X 945 REMARK 465 PHE X 946 REMARK 465 ASP X 947 REMARK 465 GLU X 948 REMARK 465 GLN X 949 REMARK 465 ARG X 950 REMARK 465 GLU X 951 REMARK 465 GLU X 952 REMARK 465 VAL X 953 REMARK 465 GLN X 954 REMARK 465 ARG X 955 REMARK 465 LEU X 956 REMARK 465 ALA X 957 REMARK 465 ALA X 958 REMARK 465 GLU X 959 REMARK 465 ARG X 960 REMARK 465 ASP X 961 REMARK 465 ALA X 962 REMARK 465 ALA X 963 REMARK 465 GLN X 964 REMARK 465 ALA X 965 REMARK 465 ARG X 966 REMARK 465 LEU X 967 REMARK 465 GLN X 968 REMARK 465 ALA X 969 REMARK 465 ALA X 970 REMARK 465 ARG X 971 REMARK 465 LEU X 972 REMARK 465 VAL X 973 REMARK 465 ALA X 974 REMARK 465 TRP X 975 REMARK 465 SER X 976 REMARK 465 SER X 977 REMARK 465 GLU X 978 REMARK 465 GLY X 979 REMARK 465 GLY X 980 REMARK 465 GLN X 981 REMARK 465 GLY X 982 REMARK 465 ALA X 983 REMARK 465 PRO X 984 REMARK 465 PRO X 985 REMARK 465 PHE X 986 REMARK 465 ARG X 987 REMARK 465 MET X 988 REMARK 465 TRP X 989 REMARK 465 ASP X 990 REMARK 465 PRO X 991 REMARK 465 GLY X 992 REMARK 465 SER X 993 REMARK 465 GLY X 994 REMARK 465 PRO X 995 REMARK 465 ALA X 996 REMARK 465 GLY X 997 REMARK 465 GLY X 998 REMARK 465 ARG X 999 REMARK 465 ALA X 1000 REMARK 465 TRP X 1001 REMARK 465 ASP X 1002 REMARK 465 GLY X 1003 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP X1111 CG OD1 OD2 REMARK 470 SER X1112 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU X 1004 O HOH X 2373 2.10 REMARK 500 OG1 THR X 1116 O HOH X 2168 2.10 REMARK 500 OG SER X 1014 O HOH X 2089 2.12 REMARK 500 O HOH X 2304 O HOH X 2346 2.12 REMARK 500 O HOH X 2241 O HOH X 2380 2.14 REMARK 500 CA SER X 1112 O HOH X 2234 2.15 REMARK 500 O HOH X 2146 O HOH X 2303 2.15 REMARK 500 O HOH X 2017 O HOH X 2364 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 2364 O HOH X 2382 3645 2.07 REMARK 500 O HOH X 2080 O HOH X 2353 1655 2.08 REMARK 500 O HOH X 2263 O HOH X 2340 1455 2.15 REMARK 500 O HOH X 2093 O HOH X 2353 1655 2.18 REMARK 500 O HOH X 2252 O HOH X 2265 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER X1014 CA SER X1014 CB 0.100 REMARK 500 TYR X1083 CZ TYR X1083 CE2 -0.107 REMARK 500 MET X1089 CG MET X1089 SD -0.189 REMARK 500 MET X1200 CG MET X1200 SD 0.209 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X1057 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG X1078 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR X1083 CB - CG - CD2 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET X1089 CB - CG - SD ANGL. DEV. = 20.6 DEGREES REMARK 500 ARG X1196 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 MET X1200 CG - SD - CE ANGL. DEV. = -40.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET X1011 58.76 -92.05 REMARK 500 ASP X1111 -122.32 52.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q4N RELATED DB: PDB REMARK 900 RELATED ID: 4Q4T RELATED DB: PDB DBREF 4Q4G X 739 1210 UNP O53168 RIPA_MYCTU 1 472 SEQADV 4Q4G ALA X 1121 UNP O53168 CYS 383 ENGINEERED MUTATION SEQRES 1 X 472 MET ARG ARG ASN ARG ARG GLY SER PRO ALA ARG PRO ALA SEQRES 2 X 472 ALA ARG PHE VAL ARG PRO ALA ILE PRO SER ALA LEU SER SEQRES 3 X 472 VAL ALA LEU LEU VAL CYS THR PRO GLY LEU ALA THR ALA SEQRES 4 X 472 ASP PRO GLN THR ASP THR ILE ALA ALA LEU ILE ALA ASP SEQRES 5 X 472 VAL ALA LYS ALA ASN GLN ARG LEU GLN ASP LEU SER ASP SEQRES 6 X 472 GLU VAL GLN ALA GLU GLN GLU SER VAL ASN LYS ALA MET SEQRES 7 X 472 VAL ASP VAL GLU THR ALA ARG ASP ASN ALA ALA ALA ALA SEQRES 8 X 472 GLU ASP ASP LEU GLU VAL SER GLN ARG ALA VAL LYS ASP SEQRES 9 X 472 ALA ASN ALA ALA ILE ALA ALA ALA GLN HIS ARG PHE ASP SEQRES 10 X 472 THR PHE ALA ALA ALA THR TYR MET ASN GLY PRO SER VAL SEQRES 11 X 472 SER TYR LEU SER ALA SER SER PRO ASP GLU ILE ILE ALA SEQRES 12 X 472 THR VAL THR ALA ALA LYS THR LEU SER ALA SER SER GLN SEQRES 13 X 472 ALA VAL MET ALA ASN LEU GLN ARG ALA ARG THR GLU ARG SEQRES 14 X 472 VAL ASN THR GLU SER ALA ALA ARG LEU ALA LYS GLN LYS SEQRES 15 X 472 ALA ASP LYS ALA ALA ALA ASP ALA LYS ALA SER GLN ASP SEQRES 16 X 472 ALA ALA VAL ALA ALA LEU THR GLU THR ARG ARG LYS PHE SEQRES 17 X 472 ASP GLU GLN ARG GLU GLU VAL GLN ARG LEU ALA ALA GLU SEQRES 18 X 472 ARG ASP ALA ALA GLN ALA ARG LEU GLN ALA ALA ARG LEU SEQRES 19 X 472 VAL ALA TRP SER SER GLU GLY GLY GLN GLY ALA PRO PRO SEQRES 20 X 472 PHE ARG MET TRP ASP PRO GLY SER GLY PRO ALA GLY GLY SEQRES 21 X 472 ARG ALA TRP ASP GLY LEU TRP ASP PRO THR LEU PRO MET SEQRES 22 X 472 ILE PRO SER ALA ASN ILE PRO GLY ASP PRO ILE ALA VAL SEQRES 23 X 472 VAL ASN GLN VAL LEU GLY ILE SER ALA THR SER ALA GLN SEQRES 24 X 472 VAL THR ALA ASN MET GLY ARG LYS PHE LEU GLU GLN LEU SEQRES 25 X 472 GLY ILE LEU GLN PRO THR ASP THR GLY ILE THR ASN ALA SEQRES 26 X 472 PRO ALA GLY SER ALA GLN GLY ARG ILE PRO ARG VAL TYR SEQRES 27 X 472 GLY ARG GLN ALA SER GLU TYR VAL ILE ARG ARG GLY MET SEQRES 28 X 472 SER GLN ILE GLY VAL PRO TYR SER TRP GLY GLY GLY ASN SEQRES 29 X 472 ALA ALA GLY PRO SER LYS GLY ILE ASP SER GLY ALA GLY SEQRES 30 X 472 THR VAL GLY PHE ASP ALA SER GLY LEU VAL LEU TYR SER SEQRES 31 X 472 PHE ALA GLY VAL GLY ILE LYS LEU PRO HIS TYR SER GLY SEQRES 32 X 472 SER GLN TYR ASN LEU GLY ARG LYS ILE PRO SER SER GLN SEQRES 33 X 472 MET ARG ARG GLY ASP VAL ILE PHE TYR GLY PRO ASN GLY SEQRES 34 X 472 SER GLN HIS VAL THR ILE TYR LEU GLY ASN GLY GLN MET SEQRES 35 X 472 LEU GLU ALA PRO ASP VAL GLY LEU LYS VAL ARG VAL ALA SEQRES 36 X 472 PRO VAL ARG THR ALA GLY MET THR PRO TYR VAL VAL ARG SEQRES 37 X 472 TYR ILE GLU TYR FORMUL 2 HOH *395(H2 O) HELIX 1 1 SER X 1035 LEU X 1050 1 16 HELIX 2 2 PRO X 1073 VAL X 1075 5 3 HELIX 3 3 TYR X 1076 SER X 1090 1 15 HELIX 4 4 ILE X 1110 ALA X 1114 5 5 HELIX 5 5 ASP X 1120 GLY X 1131 1 12 HELIX 6 6 TYR X 1139 ASN X 1145 1 7 HELIX 7 7 SER X 1153 MET X 1155 5 3 HELIX 8 8 GLY X 1164 SER X 1168 5 5 SHEET 1 A 2 ILE X1022 ASN X1026 0 SHEET 2 A 2 ILE X1031 THR X1034 -1 O ILE X1031 N ASN X1026 SHEET 1 B 2 SER X1107 LYS X1108 0 SHEET 2 B 2 VAL X1117 GLY X1118 -1 O GLY X1118 N SER X1107 SHEET 1 C 2 ARG X1148 PRO X1151 0 SHEET 2 C 2 TYR X1203 ARG X1206 -1 O ARG X1206 N ARG X1148 SHEET 1 D 4 VAL X1160 TYR X1163 0 SHEET 2 D 4 HIS X1170 GLY X1176 -1 O THR X1172 N ILE X1161 SHEET 3 D 4 GLN X1179 GLU X1182 -1 O GLN X1179 N LEU X1175 SHEET 4 D 4 ARG X1191 PRO X1194 -1 O ALA X1193 N MET X1180 CRYST1 36.757 65.505 67.978 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014711 0.00000