HEADER TRANSFERASE/TRANSFERASE INHIBITOR 15-APR-14 4Q4P TITLE TRNA-GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH 2-{[2-(PIPERIDIN- TITLE 2 1-YL)ETHYL]AMINO}-3,5-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GUANINE INSERTION ENZYME; COMPND 5 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 6 EC: 2.4.2.29; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D-ZM4 KEYWDS TRANSFERASE, GUANINE EXCHANGE ENZYME, PREQ1, TRNA, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.NEEB,A.HEINE,G.KLEBE REVDAT 3 20-SEP-23 4Q4P 1 REMARK LINK REVDAT 2 23-JUL-14 4Q4P 1 JRNL REVDAT 1 09-JUL-14 4Q4P 0 JRNL AUTH M.NEEB,M.BETZ,A.HEINE,L.J.BARANDUN,C.HOHN,F.DIEDERICH, JRNL AUTH 2 G.KLEBE JRNL TITL BEYOND AFFINITY: ENTHALPY-ENTROPY FACTORIZATION UNRAVELS JRNL TITL 2 COMPLEXITY OF A FLAT STRUCTURE-ACTIVITY RELATIONSHIP FOR JRNL TITL 3 INHIBITION OF A TRNA-MODIFYING ENZYME. JRNL REF J.MED.CHEM. V. 57 5566 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24960372 JRNL DOI 10.1021/JM5006868 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 60056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1908 - 4.3062 0.97 2592 144 0.1615 0.1726 REMARK 3 2 4.3062 - 3.4201 1.00 2619 150 0.1433 0.1591 REMARK 3 3 3.4201 - 2.9884 1.00 2625 127 0.1467 0.1579 REMARK 3 4 2.9884 - 2.7154 1.00 2612 147 0.1495 0.1611 REMARK 3 5 2.7154 - 2.5209 1.00 2584 134 0.1542 0.1791 REMARK 3 6 2.5209 - 2.3724 1.00 2626 142 0.1580 0.1701 REMARK 3 7 2.3724 - 2.2537 1.00 2623 130 0.1522 0.1626 REMARK 3 8 2.2537 - 2.1556 1.00 2565 159 0.1500 0.1738 REMARK 3 9 2.1556 - 2.0726 1.00 2590 151 0.1470 0.1788 REMARK 3 10 2.0726 - 2.0011 1.00 2587 133 0.1487 0.2003 REMARK 3 11 2.0011 - 1.9386 1.00 2617 147 0.1490 0.1568 REMARK 3 12 1.9386 - 1.8832 1.00 2568 133 0.1515 0.1599 REMARK 3 13 1.8832 - 1.8336 1.00 2572 140 0.1530 0.1786 REMARK 3 14 1.8336 - 1.7889 1.00 2596 124 0.1511 0.1698 REMARK 3 15 1.7889 - 1.7482 1.00 2631 137 0.1549 0.1689 REMARK 3 16 1.7482 - 1.7110 1.00 2619 115 0.1567 0.1743 REMARK 3 17 1.7110 - 1.6768 1.00 2557 136 0.1508 0.1844 REMARK 3 18 1.6768 - 1.6452 1.00 2614 129 0.1489 0.1770 REMARK 3 19 1.6452 - 1.6158 1.00 2591 136 0.1576 0.1751 REMARK 3 20 1.6158 - 1.5884 1.00 2547 155 0.1547 0.1766 REMARK 3 21 1.5884 - 1.5628 1.00 2618 138 0.1730 0.1949 REMARK 3 22 1.5628 - 1.5388 0.97 2470 126 0.2035 0.2280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2960 REMARK 3 ANGLE : 1.064 4011 REMARK 3 CHIRALITY : 0.040 427 REMARK 3 PLANARITY : 0.006 549 REMARK 3 DIHEDRAL : 12.123 1128 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.3720 5.8640 18.3209 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.1087 REMARK 3 T33: 0.1215 T12: -0.0023 REMARK 3 T13: 0.0042 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.0666 L22: 0.4781 REMARK 3 L33: 1.2782 L12: -0.4393 REMARK 3 L13: -0.0487 L23: -0.0401 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0696 S13: 0.0593 REMARK 3 S21: 0.0355 S22: 0.0468 S23: -0.0084 REMARK 3 S31: -0.0788 S32: -0.0484 S33: -0.0340 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.6942 14.8058 27.9297 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.1255 REMARK 3 T33: 0.1210 T12: 0.0070 REMARK 3 T13: -0.0217 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.3512 L22: 0.7888 REMARK 3 L33: 1.1946 L12: 0.0235 REMARK 3 L13: -0.2646 L23: 0.1607 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.1451 S13: 0.1333 REMARK 3 S21: 0.0673 S22: 0.0197 S23: -0.0610 REMARK 3 S31: -0.1471 S32: 0.0566 S33: -0.0132 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.6259 8.0687 -0.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.1480 REMARK 3 T33: 0.1501 T12: -0.0174 REMARK 3 T13: 0.0228 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0998 L22: 0.6152 REMARK 3 L33: 2.3456 L12: -0.5387 REMARK 3 L13: 1.4365 L23: -0.8441 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.1450 S13: 0.0397 REMARK 3 S21: -0.0353 S22: -0.0395 S23: -0.0729 REMARK 3 S31: -0.0468 S32: 0.1785 S33: 0.0683 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89460 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60063 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30200 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 10% DMSO, 13% PEG 8000, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.99250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.42650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.99250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.42650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 179.97000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 828 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ARG A 132 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 SER A 110 OG REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 HIS A 133 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 112.27 -164.97 REMARK 500 GLN A 203 -162.79 -123.64 REMARK 500 SER A 205 -133.37 56.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 105.4 REMARK 620 3 CYS A 323 SG 114.7 115.2 REMARK 620 4 HIS A 349 ND1 105.9 115.1 100.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2YO A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q4M RELATED DB: PDB REMARK 900 RELATED ID: 4Q4O RELATED DB: PDB REMARK 900 RELATED ID: 4Q4Q RELATED DB: PDB REMARK 900 RELATED ID: 4Q4R RELATED DB: PDB REMARK 900 RELATED ID: 4Q4S RELATED DB: PDB REMARK 900 RELATED ID: 1P0D RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS HAVE INDICATED THE CORRECT RESIDUE AT THE POSITION IS LYS. REMARK 999 E.G. REUTER K. K. H., FICNER R.; J. BACTERIOL. 177:5284-5288(1995). DBREF 4Q4P A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 4Q4P LYS A 312 UNP P28720 THR 312 SEE REMARK 999 SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET DMS A 403 4 HET CL A 404 1 HET 2YO A 405 23 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION HETNAM 2YO 2-{[2-(PIPERIDIN-1-YL)ETHYL]AMINO}-3,5-DIHYDRO-8H- HETNAM 2 2YO IMIDAZO[4,5-G]QUINAZOLIN-8-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 DMS C2 H6 O S FORMUL 5 CL CL 1- FORMUL 6 2YO C16 H20 N6 O FORMUL 7 HOH *330(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 THR A 71 ARG A 77 1 7 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 SER A 112 1 9 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 ARG A 189 1 26 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 ARG A 274 1 11 HELIX 13 13 VAL A 282 ASN A 290 1 9 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 PHE A 14 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 9 ALA A 41 MET A 43 0 SHEET 2 B 9 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 9 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 9 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 9 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 B 9 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 9 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 9 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 9 B 9 VAL A 45 GLY A 46 1 N GLY A 46 O LEU A 68 SHEET 1 C 3 LYS A 116 GLN A 117 0 SHEET 2 C 3 VAL A 122 THR A 123 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 MET A 134 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.28 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.10 CISPEP 1 THR A 39 PRO A 40 0 1.38 CISPEP 2 ARG A 77 PRO A 78 0 3.74 CISPEP 3 TYR A 161 PRO A 162 0 -1.04 CISPEP 4 VAL A 262 GLY A 263 0 -2.01 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 8 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC2 8 ASP A 96 ARG A 97 LYS A 325 HOH A 760 SITE 1 AC3 4 HIS A 145 SER A 188 LYS A 190 GLU A 191 SITE 1 AC4 2 VAL A 282 2YO A 405 SITE 1 AC5 15 TYR A 106 ASP A 156 CYS A 158 GLN A 203 SITE 2 AC5 15 GLY A 229 GLY A 230 LEU A 231 ALA A 232 SITE 3 AC5 15 MET A 260 GLY A 261 LEU A 283 ARG A 286 SITE 4 AC5 15 CL A 404 HOH A 537 HOH A 555 CRYST1 89.985 64.853 70.741 90.00 93.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011113 0.000000 0.000644 0.00000 SCALE2 0.000000 0.015419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014160 0.00000