data_4Q53 # _entry.id 4Q53 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Q53 pdb_00004q53 10.2210/pdb4q53/pdb RCSB RCSB085614 ? ? WWPDB D_1000085614 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417916 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4Q53 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BACUNI_04292) from Bacteroides uniformis ATCC 8492 at 1.27 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4Q53 _cell.length_a 108.136 _cell.length_b 37.109 _cell.length_c 61.376 _cell.angle_alpha 90.00 _cell.angle_beta 121.66 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4Q53 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 12458.679 2 ? ? 'UNP residues 22-130' ? 2 non-polymer syn 'IODIDE ION' 126.904 9 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 9 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 non-polymer syn 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL 384.462 1 ? ? ? ? 7 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 8 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 9 water nat water 18.015 184 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGT(MSE)AAFFSNHKVGSFNVNHQGKRDESGFVIG IL(MSE)TANGNFRVN(CSO)FFRKVQNKYVIHQIRIDKTDE ; _entity_poly.pdbx_seq_one_letter_code_can ;GQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMT ANGNFRVNCFFRKVQNKYVIHQIRIDKTDE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-417916 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ASN n 1 4 VAL n 1 5 PRO n 1 6 GLU n 1 7 GLY n 1 8 VAL n 1 9 ILE n 1 10 GLY n 1 11 ALA n 1 12 PHE n 1 13 LYS n 1 14 GLU n 1 15 GLY n 1 16 ASN n 1 17 SER n 1 18 GLN n 1 19 GLU n 1 20 LEU n 1 21 ASN n 1 22 LYS n 1 23 TYR n 1 24 LEU n 1 25 GLY n 1 26 ASP n 1 27 LYS n 1 28 VAL n 1 29 ASP n 1 30 LEU n 1 31 ILE n 1 32 ILE n 1 33 GLN n 1 34 ASN n 1 35 LYS n 1 36 SER n 1 37 THR n 1 38 HIS n 1 39 ALA n 1 40 ASP n 1 41 LYS n 1 42 ARG n 1 43 THR n 1 44 ALA n 1 45 GLU n 1 46 GLY n 1 47 THR n 1 48 MSE n 1 49 ALA n 1 50 ALA n 1 51 PHE n 1 52 PHE n 1 53 SER n 1 54 ASN n 1 55 HIS n 1 56 LYS n 1 57 VAL n 1 58 GLY n 1 59 SER n 1 60 PHE n 1 61 ASN n 1 62 VAL n 1 63 ASN n 1 64 HIS n 1 65 GLN n 1 66 GLY n 1 67 LYS n 1 68 ARG n 1 69 ASP n 1 70 GLU n 1 71 SER n 1 72 GLY n 1 73 PHE n 1 74 VAL n 1 75 ILE n 1 76 GLY n 1 77 ILE n 1 78 LEU n 1 79 MSE n 1 80 THR n 1 81 ALA n 1 82 ASN n 1 83 GLY n 1 84 ASN n 1 85 PHE n 1 86 ARG n 1 87 VAL n 1 88 ASN n 1 89 CSO n 1 90 PHE n 1 91 PHE n 1 92 ARG n 1 93 LYS n 1 94 VAL n 1 95 GLN n 1 96 ASN n 1 97 LYS n 1 98 TYR n 1 99 VAL n 1 100 ILE n 1 101 HIS n 1 102 GLN n 1 103 ILE n 1 104 ARG n 1 105 ILE n 1 106 ASP n 1 107 LYS n 1 108 THR n 1 109 ASP n 1 110 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACUNI_04292 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides uniformis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411479 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8492 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedE5T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7V9L7_BACUN _struct_ref.pdbx_db_accession A7V9L7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGILMTA NGNFRVNCFFRKVQNKYVIHQIRIDKTDE ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4Q53 A 2 ? 110 ? A7V9L7 22 ? 130 ? 22 130 2 1 4Q53 B 2 ? 110 ? A7V9L7 22 ? 130 ? 22 130 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4Q53 GLY A 1 ? UNP A7V9L7 ? ? 'expression tag' 0 1 2 4Q53 GLY B 1 ? UNP A7V9L7 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 7PG non-polymer . 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL ? 'C17 H36 O9' 384.462 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4Q53 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.07M Sodium Iodide, 30.00% polyethylene glycol 3350, 0.01M ferric(III) chloride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-11-25 _diffrn_detector.details 'FLAT MIRROR (VERTICAL FOCUSING), SINGLE CRYSTAL SI(111) BENT MONOCHROMATOR (HORIZONTAL FOCUSING)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SINGLE CRYSTAL SI(111) BENT' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97882 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SSRL BEAMLINE BL11-1' SSRL BL11-1 0.97882 ? 2 ? ? ? ? ? ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4Q53 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.002 _reflns.d_resolution_high 1.270 _reflns.number_obs 53919 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 14.53 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.27 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 97.7 _reflns_shell.Rmerge_I_obs 0.38500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.600 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4Q53 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 53907 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.00 _refine.ls_d_res_high 1.27 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.155 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.154 _refine.ls_R_factor_R_free 0.176 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.110 _refine.ls_number_reflns_R_free 2753 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.200 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.42 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 3. IODIDES (IOD) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. THE MODELING OF IODIDE IS SUPPORTED BY ANOMALOUS DIFFERENCE MAPS. 4. POLYETHYLENE GLYCOL FRAGMENTS (7PE,PEG, AND PG4) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. 5. SODIUM (NA) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE. 1,2- ETHANEDIOL (EDO), USED AS A CRYOPROTECTANT, HAS ALSO BEEN MODELED INTO THE STRUCTURE. 5. HYDROGENS HAVE BEEN ADDED AT THE RIDING POSITIONS. 6. ELECTRON DENSITY INDICATES THAT CYS 109 ON THE TWO SUBUNITS IN THE ASYMMETRIC UNIT ARE OXIDIZED; THEREFORE, THESE RESIDUES WERE MODELED AS S-HYDROXYCYSTEINE (CSO). ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.090 _refine.pdbx_overall_phase_error 14.200 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1704 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 1970 _refine_hist.d_res_high 1.27 _refine_hist.d_res_low 28.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 2084 'X-RAY DIFFRACTION' ? f_angle_d 1.725 ? ? 2813 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.421 ? ? 865 'X-RAY DIFFRACTION' ? f_chiral_restr 0.079 ? ? 293 'X-RAY DIFFRACTION' ? f_plane_restr 0.010 ? ? 372 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.2700 1.2919 2514 0.1547 98.00 0.1966 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.2919 1.3154 2578 0.1416 99.00 0.2037 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.3154 1.3407 2506 0.1329 98.00 0.1839 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.3407 1.3681 2558 0.1276 98.00 0.1633 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.3681 1.3978 2560 0.1214 99.00 0.1528 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.3978 1.4303 2585 0.1147 98.00 0.1821 . . 119 . . . . 'X-RAY DIFFRACTION' . 1.4303 1.4661 2587 0.1142 99.00 0.1803 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.4661 1.5057 2552 0.1039 99.00 0.1472 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.5057 1.5500 2543 0.1020 98.00 0.1295 . . 124 . . . . 'X-RAY DIFFRACTION' . 1.5500 1.6000 2515 0.1049 98.00 0.1483 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.6000 1.6572 2579 0.1102 99.00 0.1528 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.6572 1.7236 2574 0.1150 99.00 0.1528 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.7236 1.8020 2571 0.1236 99.00 0.1809 . . 165 . . . . 'X-RAY DIFFRACTION' . 1.8020 1.8970 2542 0.1276 99.00 0.1500 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.8970 2.0158 2487 0.1278 96.00 0.1759 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.0158 2.1714 2622 0.1348 99.00 0.1636 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.1714 2.3898 2556 0.1478 99.00 0.1685 . . 164 . . . . 'X-RAY DIFFRACTION' . 2.3898 2.7353 2552 0.1616 96.00 0.1867 . . 121 . . . . 'X-RAY DIFFRACTION' . 2.7353 3.4450 2534 0.1768 96.00 0.1952 . . 131 . . . . 'X-RAY DIFFRACTION' . 3.4450 26.9079 2639 0.2033 96.00 0.1883 . . 121 . . . . # _struct.title 'Crystal structure of a DUF4783 family protein (BACUNI_04292) from Bacteroides uniformis ATCC 8492 at 1.27 A resolution' _struct.entry_id 4Q53 _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;Cystatin-like fold, DUF4783, PF16022 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4Q53 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 6 ? T N N 7 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 8 ? AA N N 9 ? BA N N 9 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 5 ? GLY A 15 ? PRO A 25 GLY A 35 1 ? 11 HELX_P HELX_P2 2 ASN A 16 ? ASN A 21 ? ASN A 36 ASN A 41 1 ? 6 HELX_P HELX_P3 3 LYS A 41 ? HIS A 55 ? LYS A 61 HIS A 75 1 ? 15 HELX_P HELX_P4 4 PRO B 5 ? GLY B 15 ? PRO B 25 GLY B 35 1 ? 11 HELX_P HELX_P5 5 ASN B 16 ? LYS B 22 ? ASN B 36 LYS B 42 1 ? 7 HELX_P HELX_P6 6 LYS B 41 ? HIS B 55 ? LYS B 61 HIS B 75 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 47 C ? ? ? 1_555 A MSE 48 N ? ? A THR 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 48 C ? ? ? 1_555 A ALA 49 N ? ? A MSE 68 A ALA 69 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A LEU 78 C ? ? ? 1_555 A MSE 79 N ? ? A LEU 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 79 C ? ? ? 1_555 A THR 80 N ? ? A MSE 99 A THR 100 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A ASN 88 C ? ? ? 1_555 A CSO 89 N ? ? A ASN 108 A CSO 109 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? A CSO 89 C ? ? ? 1_555 A PHE 90 N ? ? A CSO 109 A PHE 110 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? B THR 47 C ? ? ? 1_555 B MSE 48 N ? ? B THR 67 B MSE 68 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? B MSE 48 C ? ? ? 1_555 B ALA 49 N ? ? B MSE 68 B ALA 69 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale9 covale both ? B LEU 78 C ? ? ? 1_555 B MSE 79 N A ? B LEU 98 B MSE 99 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? B LEU 78 C ? ? ? 1_555 B MSE 79 N B ? B LEU 98 B MSE 99 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale both ? B MSE 79 C A ? ? 1_555 B THR 80 N ? ? B MSE 99 B THR 100 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale12 covale both ? B MSE 79 C B ? ? 1_555 B THR 80 N ? ? B MSE 99 B THR 100 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? B ASN 88 C ? ? ? 1_555 B CSO 89 N ? ? B ASN 108 B CSO 109 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale14 covale both ? B CSO 89 C ? ? ? 1_555 B PHE 90 N ? ? B CSO 109 B PHE 110 1_555 ? ? ? ? ? ? ? 1.323 ? ? metalc1 metalc ? ? T PG4 . O5 ? ? ? 1_555 Z NA . NA ? ? B PG4 206 B NA 212 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc2 metalc ? ? T PG4 . O4 ? ? ? 1_555 Z NA . NA ? ? B PG4 206 B NA 212 1_555 ? ? ? ? ? ? ? 2.984 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 4 A . ? VAL 24 A PRO 5 A ? PRO 25 A 1 8.91 2 VAL 4 B . ? VAL 24 B PRO 5 B ? PRO 25 B 1 9.21 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 35 ? ASP A 40 ? LYS A 55 ASP A 60 A 2 LEU A 24 ? ILE A 32 ? LEU A 44 ILE A 52 A 3 LYS A 97 ? LYS A 107 ? LYS A 117 LYS A 127 A 4 GLY A 83 ? VAL A 94 ? GLY A 103 VAL A 114 A 5 SER A 71 ? THR A 80 ? SER A 91 THR A 100 A 6 VAL A 57 ? LYS A 67 ? VAL A 77 LYS A 87 B 1 LYS B 35 ? ASP B 40 ? LYS B 55 ASP B 60 B 2 LEU B 24 ? ILE B 32 ? LEU B 44 ILE B 52 B 3 LYS B 97 ? LYS B 107 ? LYS B 117 LYS B 127 B 4 GLY B 83 ? VAL B 94 ? GLY B 103 VAL B 114 B 5 SER B 71 ? THR B 80 ? SER B 91 THR B 100 B 6 VAL B 57 ? ARG B 68 ? VAL B 77 ARG B 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 37 ? O THR A 57 N LEU A 30 ? N LEU A 50 A 2 3 N ILE A 31 ? N ILE A 51 O ILE A 105 ? O ILE A 125 A 3 4 O ASP A 106 ? O ASP A 126 N ARG A 86 ? N ARG A 106 A 4 5 O PHE A 85 ? O PHE A 105 N LEU A 78 ? N LEU A 98 A 5 6 O MSE A 79 ? O MSE A 99 N GLY A 58 ? N GLY A 78 B 1 2 O LYS B 35 ? O LYS B 55 N ILE B 32 ? N ILE B 52 B 2 3 N ASP B 29 ? N ASP B 49 O HIS B 101 ? O HIS B 121 B 3 4 O LYS B 97 ? O LYS B 117 N VAL B 94 ? N VAL B 114 B 4 5 O PHE B 85 ? O PHE B 105 N LEU B 78 ? N LEU B 98 B 5 6 O MSE B 79 ? O MSE B 99 N GLY B 58 ? N GLY B 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 201 ? 3 'BINDING SITE FOR RESIDUE IOD A 201' AC2 Software A IOD 202 ? 2 'BINDING SITE FOR RESIDUE IOD A 202' AC3 Software A IOD 203 ? 3 'BINDING SITE FOR RESIDUE IOD A 203' AC4 Software A IOD 204 ? 3 'BINDING SITE FOR RESIDUE IOD A 204' AC5 Software A IOD 205 ? 4 'BINDING SITE FOR RESIDUE IOD A 205' AC6 Software A PGE 206 ? 8 'BINDING SITE FOR RESIDUE PGE A 206' AC7 Software A PGE 207 ? 7 'BINDING SITE FOR RESIDUE PGE A 207' AC8 Software A CL 208 ? 2 'BINDING SITE FOR RESIDUE CL A 208' AC9 Software A CL 209 ? 4 'BINDING SITE FOR RESIDUE CL A 209' BC1 Software A CL 210 ? 3 'BINDING SITE FOR RESIDUE CL A 210' BC2 Software A CL 211 ? 1 'BINDING SITE FOR RESIDUE CL A 211' BC3 Software A EDO 212 ? 5 'BINDING SITE FOR RESIDUE EDO A 212' BC4 Software B IOD 201 ? 2 'BINDING SITE FOR RESIDUE IOD B 201' BC5 Software B IOD 202 ? 2 'BINDING SITE FOR RESIDUE IOD B 202' BC6 Software B IOD 203 ? 3 'BINDING SITE FOR RESIDUE IOD B 203' BC7 Software B IOD 204 ? 2 'BINDING SITE FOR RESIDUE IOD B 204' BC8 Software B 7PG 205 ? 14 'BINDING SITE FOR RESIDUE 7PG B 205' BC9 Software B PG4 206 ? 8 'BINDING SITE FOR RESIDUE PG4 B 206' CC1 Software B CL 207 ? 1 'BINDING SITE FOR RESIDUE CL B 207' CC2 Software B CL 208 ? 1 'BINDING SITE FOR RESIDUE CL B 208' CC3 Software B CL 209 ? 4 'BINDING SITE FOR RESIDUE CL B 209' CC4 Software B CL 210 ? 1 'BINDING SITE FOR RESIDUE CL B 210' CC5 Software B CL 211 ? 2 'BINDING SITE FOR RESIDUE CL B 211' CC6 Software B NA 212 ? 2 'BINDING SITE FOR RESIDUE NA B 212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 63 ? ASN A 83 . ? 1_555 ? 2 AC1 3 ILE A 77 ? ILE A 97 . ? 1_555 ? 3 AC1 3 ARG A 86 ? ARG A 106 . ? 1_555 ? 4 AC2 2 VAL A 4 ? VAL A 24 . ? 1_555 ? 5 AC2 2 IOD G . ? IOD A 205 . ? 1_555 ? 6 AC3 3 GLN A 65 ? GLN A 85 . ? 1_555 ? 7 AC3 3 LYS A 67 ? LYS A 87 . ? 1_555 ? 8 AC3 3 IOD G . ? IOD A 205 . ? 1_555 ? 9 AC4 3 GLN B 65 ? GLN B 85 . ? 2_656 ? 10 AC4 3 LYS B 67 ? LYS B 87 . ? 2_656 ? 11 AC4 3 IOD P . ? IOD B 202 . ? 2_656 ? 12 AC5 4 GLY A 66 ? GLY A 86 . ? 1_555 ? 13 AC5 4 LYS A 67 ? LYS A 87 . ? 1_555 ? 14 AC5 4 IOD D . ? IOD A 202 . ? 1_555 ? 15 AC5 4 IOD E . ? IOD A 203 . ? 1_555 ? 16 AC6 8 ARG A 68 ? ARG A 88 . ? 1_555 ? 17 AC6 8 SER A 71 ? SER A 91 . ? 1_555 ? 18 AC6 8 GLY A 72 ? GLY A 92 . ? 1_555 ? 19 AC6 8 PHE A 73 ? PHE A 93 . ? 1_555 ? 20 AC6 8 PHE A 90 ? PHE A 110 . ? 1_555 ? 21 AC6 8 PHE A 91 ? PHE A 111 . ? 1_555 ? 22 AC6 8 ARG A 92 ? ARG A 112 . ? 1_555 ? 23 AC6 8 CL X . ? CL B 210 . ? 2_656 ? 24 AC7 7 ARG A 86 ? ARG A 106 . ? 1_555 ? 25 AC7 7 PHE A 90 ? PHE A 110 . ? 1_555 ? 26 AC7 7 HOH AA . ? HOH A 321 . ? 1_555 ? 27 AC7 7 ARG B 86 ? ARG B 106 . ? 1_555 ? 28 AC7 7 ARG B 104 ? ARG B 124 . ? 1_555 ? 29 AC7 7 ASP B 106 ? ASP B 126 . ? 1_555 ? 30 AC7 7 7PG S . ? 7PG B 205 . ? 2_656 ? 31 AC8 2 ASN A 54 ? ASN A 74 . ? 1_555 ? 32 AC8 2 HOH AA . ? HOH A 306 . ? 1_555 ? 33 AC9 4 VAL A 62 ? VAL A 82 . ? 1_555 ? 34 AC9 4 CL L . ? CL A 210 . ? 1_555 ? 35 AC9 4 HOH AA . ? HOH A 325 . ? 1_555 ? 36 AC9 4 HOH AA . ? HOH A 353 . ? 1_555 ? 37 BC1 3 LYS A 13 ? LYS A 33 . ? 1_555 ? 38 BC1 3 ASN A 61 ? ASN A 81 . ? 1_555 ? 39 BC1 3 CL K . ? CL A 209 . ? 1_555 ? 40 BC2 1 THR A 43 ? THR A 63 . ? 1_555 ? 41 BC3 5 LYS A 35 ? LYS A 55 . ? 4_545 ? 42 BC3 5 ASP A 109 ? ASP A 129 . ? 1_555 ? 43 BC3 5 LYS B 27 ? LYS B 47 . ? 1_555 ? 44 BC3 5 ALA B 39 ? ALA B 59 . ? 1_555 ? 45 BC3 5 ASP B 40 ? ASP B 60 . ? 1_555 ? 46 BC4 2 IOD R . ? IOD B 204 . ? 1_555 ? 47 BC4 2 IOD R . ? IOD B 204 . ? 2_656 ? 48 BC5 2 IOD F . ? IOD A 204 . ? 2_656 ? 49 BC5 2 GLY B 66 ? GLY B 86 . ? 1_555 ? 50 BC6 3 HOH AA . ? HOH A 321 . ? 1_555 ? 51 BC6 3 ASN B 88 ? ASN B 108 . ? 1_555 ? 52 BC6 3 GLN B 102 ? GLN B 122 . ? 1_555 ? 53 BC7 2 IOD O . ? IOD B 201 . ? 2_656 ? 54 BC7 2 IOD O . ? IOD B 201 . ? 1_555 ? 55 BC8 14 ASN A 63 ? ASN A 83 . ? 2_656 ? 56 BC8 14 HIS A 64 ? HIS A 84 . ? 2_656 ? 57 BC8 14 PHE A 73 ? PHE A 93 . ? 2_656 ? 58 BC8 14 ARG A 86 ? ARG A 106 . ? 2_656 ? 59 BC8 14 PGE I . ? PGE A 207 . ? 2_656 ? 60 BC8 14 LYS B 67 ? LYS B 87 . ? 1_555 ? 61 BC8 14 ARG B 68 ? ARG B 88 . ? 1_555 ? 62 BC8 14 PHE B 73 ? PHE B 93 . ? 2_656 ? 63 BC8 14 ARG B 86 ? ARG B 106 . ? 2_656 ? 64 BC8 14 ASN B 88 ? ASN B 108 . ? 2_656 ? 65 BC8 14 PHE B 90 ? PHE B 110 . ? 2_656 ? 66 BC8 14 GLN B 102 ? GLN B 122 . ? 2_656 ? 67 BC8 14 PG4 T . ? PG4 B 206 . ? 2_656 ? 68 BC8 14 PG4 T . ? PG4 B 206 . ? 1_555 ? 69 BC9 8 HIS A 64 ? HIS A 84 . ? 1_555 ? 70 BC9 8 HIS B 64 ? HIS B 84 . ? 1_555 ? 71 BC9 8 HIS B 64 ? HIS B 84 . ? 2_656 ? 72 BC9 8 7PG S . ? 7PG B 205 . ? 1_555 ? 73 BC9 8 7PG S . ? 7PG B 205 . ? 2_656 ? 74 BC9 8 NA Z . ? NA B 212 . ? 1_555 ? 75 BC9 8 NA Z . ? NA B 212 . ? 2_656 ? 76 BC9 8 HOH BA . ? HOH B 322 . ? 2_656 ? 77 CC1 1 ASN B 54 ? ASN B 74 . ? 1_555 ? 78 CC2 1 ASN B 63 ? ASN B 83 . ? 1_555 ? 79 CC3 4 VAL B 62 ? VAL B 82 . ? 1_555 ? 80 CC3 4 HOH BA . ? HOH B 348 . ? 1_555 ? 81 CC3 4 HOH BA . ? HOH B 363 . ? 1_555 ? 82 CC3 4 HOH BA . ? HOH B 381 . ? 1_555 ? 83 CC4 1 PGE H . ? PGE A 206 . ? 2_656 ? 84 CC5 2 VAL B 4 ? VAL B 24 . ? 1_555 ? 85 CC5 2 TYR B 98 ? TYR B 118 . ? 1_555 ? 86 CC6 2 PG4 T . ? PG4 B 206 . ? 2_656 ? 87 CC6 2 PG4 T . ? PG4 B 206 . ? 1_555 ? # _atom_sites.entry_id 4Q53 _atom_sites.fract_transf_matrix[1][1] 0.009248 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005703 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026948 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019142 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL I N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 22 ? ? ? A . n A 1 3 ASN 3 23 23 ASN ASN A . n A 1 4 VAL 4 24 24 VAL VAL A . n A 1 5 PRO 5 25 25 PRO PRO A . n A 1 6 GLU 6 26 26 GLU GLU A . n A 1 7 GLY 7 27 27 GLY GLY A . n A 1 8 VAL 8 28 28 VAL VAL A . n A 1 9 ILE 9 29 29 ILE ILE A . n A 1 10 GLY 10 30 30 GLY GLY A . n A 1 11 ALA 11 31 31 ALA ALA A . n A 1 12 PHE 12 32 32 PHE PHE A . n A 1 13 LYS 13 33 33 LYS LYS A . n A 1 14 GLU 14 34 34 GLU GLU A . n A 1 15 GLY 15 35 35 GLY GLY A . n A 1 16 ASN 16 36 36 ASN ASN A . n A 1 17 SER 17 37 37 SER SER A . n A 1 18 GLN 18 38 38 GLN GLN A . n A 1 19 GLU 19 39 39 GLU GLU A . n A 1 20 LEU 20 40 40 LEU LEU A . n A 1 21 ASN 21 41 41 ASN ASN A . n A 1 22 LYS 22 42 42 LYS LYS A . n A 1 23 TYR 23 43 43 TYR TYR A . n A 1 24 LEU 24 44 44 LEU LEU A . n A 1 25 GLY 25 45 45 GLY GLY A . n A 1 26 ASP 26 46 46 ASP ASP A . n A 1 27 LYS 27 47 47 LYS LYS A . n A 1 28 VAL 28 48 48 VAL VAL A . n A 1 29 ASP 29 49 49 ASP ASP A . n A 1 30 LEU 30 50 50 LEU LEU A . n A 1 31 ILE 31 51 51 ILE ILE A . n A 1 32 ILE 32 52 52 ILE ILE A . n A 1 33 GLN 33 53 53 GLN GLN A . n A 1 34 ASN 34 54 54 ASN ASN A . n A 1 35 LYS 35 55 55 LYS LYS A . n A 1 36 SER 36 56 56 SER SER A . n A 1 37 THR 37 57 57 THR THR A . n A 1 38 HIS 38 58 58 HIS HIS A . n A 1 39 ALA 39 59 59 ALA ALA A . n A 1 40 ASP 40 60 60 ASP ASP A . n A 1 41 LYS 41 61 61 LYS LYS A . n A 1 42 ARG 42 62 62 ARG ARG A . n A 1 43 THR 43 63 63 THR THR A . n A 1 44 ALA 44 64 64 ALA ALA A . n A 1 45 GLU 45 65 65 GLU GLU A . n A 1 46 GLY 46 66 66 GLY GLY A . n A 1 47 THR 47 67 67 THR THR A . n A 1 48 MSE 48 68 68 MSE MSE A . n A 1 49 ALA 49 69 69 ALA ALA A . n A 1 50 ALA 50 70 70 ALA ALA A . n A 1 51 PHE 51 71 71 PHE PHE A . n A 1 52 PHE 52 72 72 PHE PHE A . n A 1 53 SER 53 73 73 SER SER A . n A 1 54 ASN 54 74 74 ASN ASN A . n A 1 55 HIS 55 75 75 HIS HIS A . n A 1 56 LYS 56 76 76 LYS LYS A . n A 1 57 VAL 57 77 77 VAL VAL A . n A 1 58 GLY 58 78 78 GLY GLY A . n A 1 59 SER 59 79 79 SER SER A . n A 1 60 PHE 60 80 80 PHE PHE A . n A 1 61 ASN 61 81 81 ASN ASN A . n A 1 62 VAL 62 82 82 VAL VAL A . n A 1 63 ASN 63 83 83 ASN ASN A . n A 1 64 HIS 64 84 84 HIS HIS A . n A 1 65 GLN 65 85 85 GLN GLN A . n A 1 66 GLY 66 86 86 GLY GLY A . n A 1 67 LYS 67 87 87 LYS LYS A . n A 1 68 ARG 68 88 88 ARG ARG A . n A 1 69 ASP 69 89 89 ASP ASP A . n A 1 70 GLU 70 90 90 GLU GLU A . n A 1 71 SER 71 91 91 SER SER A . n A 1 72 GLY 72 92 92 GLY GLY A . n A 1 73 PHE 73 93 93 PHE PHE A . n A 1 74 VAL 74 94 94 VAL VAL A . n A 1 75 ILE 75 95 95 ILE ILE A . n A 1 76 GLY 76 96 96 GLY GLY A . n A 1 77 ILE 77 97 97 ILE ILE A . n A 1 78 LEU 78 98 98 LEU LEU A . n A 1 79 MSE 79 99 99 MSE MSE A . n A 1 80 THR 80 100 100 THR THR A . n A 1 81 ALA 81 101 101 ALA ALA A . n A 1 82 ASN 82 102 102 ASN ASN A . n A 1 83 GLY 83 103 103 GLY GLY A . n A 1 84 ASN 84 104 104 ASN ASN A . n A 1 85 PHE 85 105 105 PHE PHE A . n A 1 86 ARG 86 106 106 ARG ARG A . n A 1 87 VAL 87 107 107 VAL VAL A . n A 1 88 ASN 88 108 108 ASN ASN A . n A 1 89 CSO 89 109 109 CSO CSO A . n A 1 90 PHE 90 110 110 PHE PHE A . n A 1 91 PHE 91 111 111 PHE PHE A . n A 1 92 ARG 92 112 112 ARG ARG A . n A 1 93 LYS 93 113 113 LYS LYS A . n A 1 94 VAL 94 114 114 VAL VAL A . n A 1 95 GLN 95 115 115 GLN GLN A . n A 1 96 ASN 96 116 116 ASN ASN A . n A 1 97 LYS 97 117 117 LYS LYS A . n A 1 98 TYR 98 118 118 TYR TYR A . n A 1 99 VAL 99 119 119 VAL VAL A . n A 1 100 ILE 100 120 120 ILE ILE A . n A 1 101 HIS 101 121 121 HIS HIS A . n A 1 102 GLN 102 122 122 GLN GLN A . n A 1 103 ILE 103 123 123 ILE ILE A . n A 1 104 ARG 104 124 124 ARG ARG A . n A 1 105 ILE 105 125 125 ILE ILE A . n A 1 106 ASP 106 126 126 ASP ASP A . n A 1 107 LYS 107 127 127 LYS LYS A . n A 1 108 THR 108 128 128 THR THR A . n A 1 109 ASP 109 129 129 ASP ASP A . n A 1 110 GLU 110 130 130 GLU GLU A . n B 1 1 GLY 1 0 21 GLY GLY B . n B 1 2 GLN 2 22 22 GLN GLN B . n B 1 3 ASN 3 23 23 ASN ASN B . n B 1 4 VAL 4 24 24 VAL VAL B . n B 1 5 PRO 5 25 25 PRO PRO B . n B 1 6 GLU 6 26 26 GLU GLU B . n B 1 7 GLY 7 27 27 GLY GLY B . n B 1 8 VAL 8 28 28 VAL VAL B . n B 1 9 ILE 9 29 29 ILE ILE B . n B 1 10 GLY 10 30 30 GLY GLY B . n B 1 11 ALA 11 31 31 ALA ALA B . n B 1 12 PHE 12 32 32 PHE PHE B . n B 1 13 LYS 13 33 33 LYS LYS B . n B 1 14 GLU 14 34 34 GLU GLU B . n B 1 15 GLY 15 35 35 GLY GLY B . n B 1 16 ASN 16 36 36 ASN ASN B . n B 1 17 SER 17 37 37 SER SER B . n B 1 18 GLN 18 38 38 GLN GLN B . n B 1 19 GLU 19 39 39 GLU GLU B . n B 1 20 LEU 20 40 40 LEU LEU B . n B 1 21 ASN 21 41 41 ASN ASN B . n B 1 22 LYS 22 42 42 LYS LYS B . n B 1 23 TYR 23 43 43 TYR TYR B . n B 1 24 LEU 24 44 44 LEU LEU B . n B 1 25 GLY 25 45 45 GLY GLY B . n B 1 26 ASP 26 46 46 ASP ASP B . n B 1 27 LYS 27 47 47 LYS LYS B . n B 1 28 VAL 28 48 48 VAL VAL B . n B 1 29 ASP 29 49 49 ASP ASP B . n B 1 30 LEU 30 50 50 LEU LEU B . n B 1 31 ILE 31 51 51 ILE ILE B . n B 1 32 ILE 32 52 52 ILE ILE B . n B 1 33 GLN 33 53 53 GLN GLN B . n B 1 34 ASN 34 54 54 ASN ASN B . n B 1 35 LYS 35 55 55 LYS LYS B . n B 1 36 SER 36 56 56 SER SER B . n B 1 37 THR 37 57 57 THR THR B . n B 1 38 HIS 38 58 58 HIS HIS B . n B 1 39 ALA 39 59 59 ALA ALA B . n B 1 40 ASP 40 60 60 ASP ASP B . n B 1 41 LYS 41 61 61 LYS LYS B . n B 1 42 ARG 42 62 62 ARG ARG B . n B 1 43 THR 43 63 63 THR THR B . n B 1 44 ALA 44 64 64 ALA ALA B . n B 1 45 GLU 45 65 65 GLU GLU B . n B 1 46 GLY 46 66 66 GLY GLY B . n B 1 47 THR 47 67 67 THR THR B . n B 1 48 MSE 48 68 68 MSE MSE B . n B 1 49 ALA 49 69 69 ALA ALA B . n B 1 50 ALA 50 70 70 ALA ALA B . n B 1 51 PHE 51 71 71 PHE PHE B . n B 1 52 PHE 52 72 72 PHE PHE B . n B 1 53 SER 53 73 73 SER SER B . n B 1 54 ASN 54 74 74 ASN ASN B . n B 1 55 HIS 55 75 75 HIS HIS B . n B 1 56 LYS 56 76 76 LYS LYS B . n B 1 57 VAL 57 77 77 VAL VAL B . n B 1 58 GLY 58 78 78 GLY GLY B . n B 1 59 SER 59 79 79 SER SER B . n B 1 60 PHE 60 80 80 PHE PHE B . n B 1 61 ASN 61 81 81 ASN ASN B . n B 1 62 VAL 62 82 82 VAL VAL B . n B 1 63 ASN 63 83 83 ASN ASN B . n B 1 64 HIS 64 84 84 HIS HIS B . n B 1 65 GLN 65 85 85 GLN GLN B . n B 1 66 GLY 66 86 86 GLY GLY B . n B 1 67 LYS 67 87 87 LYS LYS B . n B 1 68 ARG 68 88 88 ARG ARG B . n B 1 69 ASP 69 89 89 ASP ASP B . n B 1 70 GLU 70 90 90 GLU GLU B . n B 1 71 SER 71 91 91 SER SER B . n B 1 72 GLY 72 92 92 GLY GLY B . n B 1 73 PHE 73 93 93 PHE PHE B . n B 1 74 VAL 74 94 94 VAL VAL B . n B 1 75 ILE 75 95 95 ILE ILE B . n B 1 76 GLY 76 96 96 GLY GLY B . n B 1 77 ILE 77 97 97 ILE ILE B . n B 1 78 LEU 78 98 98 LEU LEU B . n B 1 79 MSE 79 99 99 MSE MSE B . n B 1 80 THR 80 100 100 THR THR B . n B 1 81 ALA 81 101 101 ALA ALA B . n B 1 82 ASN 82 102 102 ASN ASN B . n B 1 83 GLY 83 103 103 GLY GLY B . n B 1 84 ASN 84 104 104 ASN ASN B . n B 1 85 PHE 85 105 105 PHE PHE B . n B 1 86 ARG 86 106 106 ARG ARG B . n B 1 87 VAL 87 107 107 VAL VAL B . n B 1 88 ASN 88 108 108 ASN ASN B . n B 1 89 CSO 89 109 109 CSO CSO B . n B 1 90 PHE 90 110 110 PHE PHE B . n B 1 91 PHE 91 111 111 PHE PHE B . n B 1 92 ARG 92 112 112 ARG ARG B . n B 1 93 LYS 93 113 113 LYS LYS B . n B 1 94 VAL 94 114 114 VAL VAL B . n B 1 95 GLN 95 115 115 GLN GLN B . n B 1 96 ASN 96 116 116 ASN ASN B . n B 1 97 LYS 97 117 117 LYS LYS B . n B 1 98 TYR 98 118 118 TYR TYR B . n B 1 99 VAL 99 119 119 VAL VAL B . n B 1 100 ILE 100 120 120 ILE ILE B . n B 1 101 HIS 101 121 121 HIS HIS B . n B 1 102 GLN 102 122 122 GLN GLN B . n B 1 103 ILE 103 123 123 ILE ILE B . n B 1 104 ARG 104 124 124 ARG ARG B . n B 1 105 ILE 105 125 125 ILE ILE B . n B 1 106 ASP 106 126 126 ASP ASP B . n B 1 107 LYS 107 127 127 LYS LYS B . n B 1 108 THR 108 128 128 THR THR B . n B 1 109 ASP 109 129 129 ASP ASP B . n B 1 110 GLU 110 130 ? ? ? B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD 1 201 132 IOD IOD A . D 2 IOD 1 202 133 IOD IOD A . E 2 IOD 1 203 135 IOD IOD A . F 2 IOD 1 204 136 IOD IOD A . G 2 IOD 1 205 139 IOD IOD A . H 3 PGE 1 206 142 PGE PGE A . I 3 PGE 1 207 143 PGE PGE A . J 4 CL 1 208 146 CL CL A . K 4 CL 1 209 148 CL CL A . L 4 CL 1 210 149 CL CL A . M 4 CL 1 211 152 CL CL A . N 5 EDO 1 212 154 EDO EDO A . O 2 IOD 1 201 131 IOD IOD B . P 2 IOD 1 202 134 IOD IOD B . Q 2 IOD 1 203 137 IOD IOD B . R 2 IOD 1 204 138 IOD IOD B . S 6 7PG 1 205 140 7PG 7PG B . T 7 PG4 1 206 141 PG4 PG4 B . U 4 CL 1 207 144 CL CL B . V 4 CL 1 208 145 CL CL B . W 4 CL 1 209 147 CL CL B . X 4 CL 1 210 150 CL CL B . Y 4 CL 1 211 151 CL CL B . Z 8 NA 1 212 153 NA NA B . AA 9 HOH 1 301 155 HOH HOH A . AA 9 HOH 2 302 156 HOH HOH A . AA 9 HOH 3 303 159 HOH HOH A . AA 9 HOH 4 304 162 HOH HOH A . AA 9 HOH 5 305 166 HOH HOH A . AA 9 HOH 6 306 170 HOH HOH A . AA 9 HOH 7 307 173 HOH HOH A . AA 9 HOH 8 308 174 HOH HOH A . AA 9 HOH 9 309 175 HOH HOH A . AA 9 HOH 10 310 176 HOH HOH A . AA 9 HOH 11 311 177 HOH HOH A . AA 9 HOH 12 312 178 HOH HOH A . AA 9 HOH 13 313 179 HOH HOH A . AA 9 HOH 14 314 180 HOH HOH A . AA 9 HOH 15 315 181 HOH HOH A . AA 9 HOH 16 316 195 HOH HOH A . AA 9 HOH 17 317 199 HOH HOH A . AA 9 HOH 18 318 200 HOH HOH A . AA 9 HOH 19 319 203 HOH HOH A . AA 9 HOH 20 320 204 HOH HOH A . AA 9 HOH 21 321 212 HOH HOH A . AA 9 HOH 22 322 214 HOH HOH A . AA 9 HOH 23 323 215 HOH HOH A . AA 9 HOH 24 324 216 HOH HOH A . AA 9 HOH 25 325 217 HOH HOH A . AA 9 HOH 26 326 218 HOH HOH A . AA 9 HOH 27 327 219 HOH HOH A . AA 9 HOH 28 328 226 HOH HOH A . AA 9 HOH 29 329 227 HOH HOH A . AA 9 HOH 30 330 228 HOH HOH A . AA 9 HOH 31 331 229 HOH HOH A . AA 9 HOH 32 332 230 HOH HOH A . AA 9 HOH 33 333 232 HOH HOH A . AA 9 HOH 34 334 233 HOH HOH A . AA 9 HOH 35 335 234 HOH HOH A . AA 9 HOH 36 336 235 HOH HOH A . AA 9 HOH 37 337 236 HOH HOH A . AA 9 HOH 38 338 237 HOH HOH A . AA 9 HOH 39 339 238 HOH HOH A . AA 9 HOH 40 340 239 HOH HOH A . AA 9 HOH 41 341 240 HOH HOH A . AA 9 HOH 42 342 241 HOH HOH A . AA 9 HOH 43 343 242 HOH HOH A . AA 9 HOH 44 344 243 HOH HOH A . AA 9 HOH 45 345 255 HOH HOH A . AA 9 HOH 46 346 257 HOH HOH A . AA 9 HOH 47 347 258 HOH HOH A . AA 9 HOH 48 348 267 HOH HOH A . AA 9 HOH 49 349 268 HOH HOH A . AA 9 HOH 50 350 269 HOH HOH A . AA 9 HOH 51 351 272 HOH HOH A . AA 9 HOH 52 352 273 HOH HOH A . AA 9 HOH 53 353 274 HOH HOH A . AA 9 HOH 54 354 275 HOH HOH A . AA 9 HOH 55 355 277 HOH HOH A . AA 9 HOH 56 356 279 HOH HOH A . AA 9 HOH 57 357 280 HOH HOH A . AA 9 HOH 58 358 281 HOH HOH A . AA 9 HOH 59 359 285 HOH HOH A . AA 9 HOH 60 360 287 HOH HOH A . AA 9 HOH 61 361 288 HOH HOH A . AA 9 HOH 62 362 289 HOH HOH A . AA 9 HOH 63 363 290 HOH HOH A . AA 9 HOH 64 364 291 HOH HOH A . AA 9 HOH 65 365 300 HOH HOH A . AA 9 HOH 66 366 303 HOH HOH A . AA 9 HOH 67 367 304 HOH HOH A . AA 9 HOH 68 368 305 HOH HOH A . AA 9 HOH 69 369 306 HOH HOH A . AA 9 HOH 70 370 307 HOH HOH A . AA 9 HOH 71 371 308 HOH HOH A . AA 9 HOH 72 372 309 HOH HOH A . AA 9 HOH 73 373 310 HOH HOH A . AA 9 HOH 74 374 316 HOH HOH A . AA 9 HOH 75 375 323 HOH HOH A . AA 9 HOH 76 376 325 HOH HOH A . AA 9 HOH 77 377 326 HOH HOH A . AA 9 HOH 78 378 327 HOH HOH A . AA 9 HOH 79 379 328 HOH HOH A . AA 9 HOH 80 380 329 HOH HOH A . AA 9 HOH 81 381 330 HOH HOH A . AA 9 HOH 82 382 331 HOH HOH A . AA 9 HOH 83 383 332 HOH HOH A . AA 9 HOH 84 384 333 HOH HOH A . AA 9 HOH 85 385 334 HOH HOH A . AA 9 HOH 86 386 335 HOH HOH A . AA 9 HOH 87 387 336 HOH HOH A . BA 9 HOH 1 301 157 HOH HOH B . BA 9 HOH 2 302 158 HOH HOH B . BA 9 HOH 3 303 160 HOH HOH B . BA 9 HOH 4 304 161 HOH HOH B . BA 9 HOH 5 305 163 HOH HOH B . BA 9 HOH 6 306 164 HOH HOH B . BA 9 HOH 7 307 165 HOH HOH B . BA 9 HOH 8 308 167 HOH HOH B . BA 9 HOH 9 309 168 HOH HOH B . BA 9 HOH 10 310 169 HOH HOH B . BA 9 HOH 11 311 171 HOH HOH B . BA 9 HOH 12 312 172 HOH HOH B . BA 9 HOH 13 313 182 HOH HOH B . BA 9 HOH 14 314 183 HOH HOH B . BA 9 HOH 15 315 184 HOH HOH B . BA 9 HOH 16 316 185 HOH HOH B . BA 9 HOH 17 317 186 HOH HOH B . BA 9 HOH 18 318 187 HOH HOH B . BA 9 HOH 19 319 188 HOH HOH B . BA 9 HOH 20 320 189 HOH HOH B . BA 9 HOH 21 321 190 HOH HOH B . BA 9 HOH 22 322 191 HOH HOH B . BA 9 HOH 23 323 192 HOH HOH B . BA 9 HOH 24 324 193 HOH HOH B . BA 9 HOH 25 325 194 HOH HOH B . BA 9 HOH 26 326 196 HOH HOH B . BA 9 HOH 27 327 197 HOH HOH B . BA 9 HOH 28 328 198 HOH HOH B . BA 9 HOH 29 329 201 HOH HOH B . BA 9 HOH 30 330 202 HOH HOH B . BA 9 HOH 31 331 205 HOH HOH B . BA 9 HOH 32 332 206 HOH HOH B . BA 9 HOH 33 333 207 HOH HOH B . BA 9 HOH 34 334 208 HOH HOH B . BA 9 HOH 35 335 209 HOH HOH B . BA 9 HOH 36 336 210 HOH HOH B . BA 9 HOH 37 337 211 HOH HOH B . BA 9 HOH 38 338 213 HOH HOH B . BA 9 HOH 39 339 220 HOH HOH B . BA 9 HOH 40 340 221 HOH HOH B . BA 9 HOH 41 341 222 HOH HOH B . BA 9 HOH 42 342 223 HOH HOH B . BA 9 HOH 43 343 224 HOH HOH B . BA 9 HOH 44 344 225 HOH HOH B . BA 9 HOH 45 345 231 HOH HOH B . BA 9 HOH 46 346 244 HOH HOH B . BA 9 HOH 47 347 245 HOH HOH B . BA 9 HOH 48 348 246 HOH HOH B . BA 9 HOH 49 349 247 HOH HOH B . BA 9 HOH 50 350 248 HOH HOH B . BA 9 HOH 51 351 249 HOH HOH B . BA 9 HOH 52 352 250 HOH HOH B . BA 9 HOH 53 353 251 HOH HOH B . BA 9 HOH 54 354 252 HOH HOH B . BA 9 HOH 55 355 253 HOH HOH B . BA 9 HOH 56 356 254 HOH HOH B . BA 9 HOH 57 357 256 HOH HOH B . BA 9 HOH 58 358 259 HOH HOH B . BA 9 HOH 59 359 260 HOH HOH B . BA 9 HOH 60 360 261 HOH HOH B . BA 9 HOH 61 361 262 HOH HOH B . BA 9 HOH 62 362 263 HOH HOH B . BA 9 HOH 63 363 264 HOH HOH B . BA 9 HOH 64 364 265 HOH HOH B . BA 9 HOH 65 365 266 HOH HOH B . BA 9 HOH 66 366 270 HOH HOH B . BA 9 HOH 67 367 271 HOH HOH B . BA 9 HOH 68 368 276 HOH HOH B . BA 9 HOH 69 369 278 HOH HOH B . BA 9 HOH 70 370 282 HOH HOH B . BA 9 HOH 71 371 283 HOH HOH B . BA 9 HOH 72 372 284 HOH HOH B . BA 9 HOH 73 373 286 HOH HOH B . BA 9 HOH 74 374 292 HOH HOH B . BA 9 HOH 75 375 293 HOH HOH B . BA 9 HOH 76 376 294 HOH HOH B . BA 9 HOH 77 377 295 HOH HOH B . BA 9 HOH 78 378 296 HOH HOH B . BA 9 HOH 79 379 297 HOH HOH B . BA 9 HOH 80 380 298 HOH HOH B . BA 9 HOH 81 381 299 HOH HOH B . BA 9 HOH 82 382 301 HOH HOH B . BA 9 HOH 83 383 302 HOH HOH B . BA 9 HOH 84 384 311 HOH HOH B . BA 9 HOH 85 385 312 HOH HOH B . BA 9 HOH 86 386 313 HOH HOH B . BA 9 HOH 87 387 314 HOH HOH B . BA 9 HOH 88 388 315 HOH HOH B . BA 9 HOH 89 389 317 HOH HOH B . BA 9 HOH 90 390 318 HOH HOH B . BA 9 HOH 91 391 319 HOH HOH B . BA 9 HOH 92 392 320 HOH HOH B . BA 9 HOH 93 393 321 HOH HOH B . BA 9 HOH 94 394 322 HOH HOH B . BA 9 HOH 95 395 324 HOH HOH B . BA 9 HOH 96 396 337 HOH HOH B . BA 9 HOH 97 397 338 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 48 A MSE 68 ? MET SELENOMETHIONINE 2 A MSE 79 A MSE 99 ? MET SELENOMETHIONINE 3 A CSO 89 A CSO 109 ? CYS S-HYDROXYCYSTEINE 4 B MSE 48 B MSE 68 ? MET SELENOMETHIONINE 5 B MSE 79 B MSE 99 ? MET SELENOMETHIONINE 6 B CSO 89 B CSO 109 ? CYS S-HYDROXYCYSTEINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,M,N,AA 2 1 B,O,P,Q,R,S,T,U,V,W,X,Y,Z,BA # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 212 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id Z _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O5 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id T _pdbx_struct_conn_angle.ptnr1_label_comp_id PG4 _pdbx_struct_conn_angle.ptnr1_label_seq_id . _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id PG4 _pdbx_struct_conn_angle.ptnr1_auth_seq_id 206 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id Z _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 212 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O4 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id T _pdbx_struct_conn_angle.ptnr3_label_comp_id PG4 _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id PG4 _pdbx_struct_conn_angle.ptnr3_auth_seq_id 206 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 62.2 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-16 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 PHENIX 1.8.4 ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4Q53 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 21-130) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 89 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 52.11 _pdbx_validate_torsion.psi -121.01 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ASN A 41 ? ? 11.56 2 1 ASN A 41 ? ? 11.35 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 88 ? CD ? A ARG 68 CD 2 1 Y 1 A ARG 88 ? NE ? A ARG 68 NE 3 1 Y 1 A ARG 88 ? CZ ? A ARG 68 CZ 4 1 Y 1 A ARG 88 ? NH1 ? A ARG 68 NH1 5 1 Y 1 A ARG 88 ? NH2 ? A ARG 68 NH2 6 1 Y 1 A ASN 116 ? CG ? A ASN 96 CG 7 1 Y 1 A ASN 116 ? OD1 ? A ASN 96 OD1 8 1 Y 1 A ASN 116 ? ND2 ? A ASN 96 ND2 9 1 Y 1 B LYS 113 ? CE ? B LYS 93 CE 10 1 Y 1 B LYS 113 ? NZ ? B LYS 93 NZ 11 1 Y 1 B ASN 116 ? CG ? B ASN 96 CG 12 1 Y 1 B ASN 116 ? OD1 ? B ASN 96 OD1 13 1 Y 1 B ASN 116 ? ND2 ? B ASN 96 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 22 ? A GLN 2 3 1 Y 1 B GLU 130 ? B GLU 110 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 'TRIETHYLENE GLYCOL' PGE 4 'CHLORIDE ION' CL 5 1,2-ETHANEDIOL EDO 6 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL 7PG 7 'TETRAETHYLENE GLYCOL' PG4 8 'SODIUM ION' NA 9 water HOH #