data_4Q56 # _entry.id 4Q56 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Q56 pdb_00004q56 10.2210/pdb4q56/pdb RCSB RCSB085617 ? ? WWPDB D_1000085617 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-14 2 'Structure model' 1 1 2015-10-28 3 'Structure model' 1 2 2018-03-07 4 'Structure model' 2 0 2019-12-25 5 'Structure model' 3 0 2020-07-29 6 'Structure model' 3 1 2023-09-20 7 'Structure model' 3 2 2024-11-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Polymer sequence' 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Structure summary' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Database references' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Refinement description' 14 6 'Structure model' 'Structure summary' 15 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' chem_comp 3 4 'Structure model' entity_poly 4 4 'Structure model' pdbx_struct_mod_residue 5 4 'Structure model' struct_conn 6 5 'Structure model' atom_site 7 5 'Structure model' atom_site_anisotrop 8 5 'Structure model' chem_comp 9 5 'Structure model' entity 10 5 'Structure model' pdbx_branch_scheme 11 5 'Structure model' pdbx_chem_comp_identifier 12 5 'Structure model' pdbx_entity_branch 13 5 'Structure model' pdbx_entity_branch_descriptor 14 5 'Structure model' pdbx_entity_branch_link 15 5 'Structure model' pdbx_entity_branch_list 16 5 'Structure model' pdbx_entity_nonpoly 17 5 'Structure model' pdbx_nonpoly_scheme 18 5 'Structure model' pdbx_struct_assembly_gen 19 5 'Structure model' pdbx_struct_conn_angle 20 5 'Structure model' pdbx_struct_special_symmetry 21 5 'Structure model' struct_asym 22 5 'Structure model' struct_conn 23 5 'Structure model' struct_site 24 5 'Structure model' struct_site_gen 25 6 'Structure model' chem_comp 26 6 'Structure model' chem_comp_atom 27 6 'Structure model' chem_comp_bond 28 6 'Structure model' database_2 29 6 'Structure model' pdbx_initial_refinement_model 30 6 'Structure model' struct_conn 31 7 'Structure model' pdbx_entry_details 32 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 4 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_atom_site.B_iso_or_equiv' 7 5 'Structure model' '_atom_site.Cartn_x' 8 5 'Structure model' '_atom_site.Cartn_y' 9 5 'Structure model' '_atom_site.Cartn_z' 10 5 'Structure model' '_atom_site.auth_asym_id' 11 5 'Structure model' '_atom_site.auth_atom_id' 12 5 'Structure model' '_atom_site.auth_comp_id' 13 5 'Structure model' '_atom_site.auth_seq_id' 14 5 'Structure model' '_atom_site.label_asym_id' 15 5 'Structure model' '_atom_site.label_atom_id' 16 5 'Structure model' '_atom_site.label_comp_id' 17 5 'Structure model' '_atom_site.label_entity_id' 18 5 'Structure model' '_atom_site.occupancy' 19 5 'Structure model' '_atom_site.type_symbol' 20 5 'Structure model' '_atom_site_anisotrop.U[1][1]' 21 5 'Structure model' '_atom_site_anisotrop.U[1][2]' 22 5 'Structure model' '_atom_site_anisotrop.U[1][3]' 23 5 'Structure model' '_atom_site_anisotrop.U[2][2]' 24 5 'Structure model' '_atom_site_anisotrop.U[2][3]' 25 5 'Structure model' '_atom_site_anisotrop.U[3][3]' 26 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 27 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 28 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 29 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 30 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 31 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 32 5 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 33 5 'Structure model' '_atom_site_anisotrop.type_symbol' 34 5 'Structure model' '_chem_comp.name' 35 5 'Structure model' '_chem_comp.type' 36 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 44 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 45 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 46 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 47 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 48 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 49 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 50 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 51 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 52 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 53 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 54 5 'Structure model' '_pdbx_struct_conn_angle.value' 55 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 56 5 'Structure model' '_struct_conn.pdbx_dist_value' 57 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 58 5 'Structure model' '_struct_conn.pdbx_role' 59 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 60 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 61 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 62 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 63 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 64 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 65 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 66 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 67 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 68 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 69 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 70 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 71 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 72 6 'Structure model' '_chem_comp.pdbx_synonyms' 73 6 'Structure model' '_database_2.pdbx_DOI' 74 6 'Structure model' '_database_2.pdbx_database_accession' 75 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4Q56 _pdbx_database_status.recvd_initial_deposition_date 2014-04-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2CGZ . unspecified PDB 2CGY . unspecified PDB 2CCV . unspecified PDB 2CE6 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pietrzyk, A.J.' 1 'Bujacz, A.' 2 'Bujacz, G.' 3 # _citation.id primary _citation.title 'Structural studies of Helix aspersa agglutinin complexed with GalNAc: A lectin that serves as a diagnostic tool.' _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_volume 81 _citation.page_first 1059 _citation.page_last 1068 _citation.year 2015 _citation.journal_id_ASTM IJBMDR _citation.country UK _citation.journal_id_ISSN 0141-8130 _citation.journal_id_CSD 0708 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26416237 _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2015.09.044 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pietrzyk, A.J.' 1 ? primary 'Bujacz, A.' 2 ? primary 'Mak, P.' 3 ? primary 'Potempa, B.' 4 ? primary 'Niedziela, T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Helix aspersa agglutinin (HAA)' 11345.768 1 ? ? ? ? 2 branched man ;alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-alpha-L-fucopyranose-(1-3)-[beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1040.964 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 7 water nat water 18.015 119 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(PCA)RVQSGKIDCGNDVSWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPTG FKASCYTWHNTKVYSMSISWISIEN ; _entity_poly.pdbx_seq_one_letter_code_can ;QRVQSGKIDCGNDVSWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPTGFKAS CYTWHNTKVYSMSISWISIEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ACETATE ION' ACT 4 2-acetamido-2-deoxy-alpha-D-galactopyranose A2G 5 'SODIUM ION' NA 6 'ZINC ION' ZN 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PCA n 1 2 ARG n 1 3 VAL n 1 4 GLN n 1 5 SER n 1 6 GLY n 1 7 LYS n 1 8 ILE n 1 9 ASP n 1 10 CYS n 1 11 GLY n 1 12 ASN n 1 13 ASP n 1 14 VAL n 1 15 SER n 1 16 TRP n 1 17 ALA n 1 18 LYS n 1 19 VAL n 1 20 PRO n 1 21 SER n 1 22 ASP n 1 23 ASP n 1 24 PRO n 1 25 GLY n 1 26 ARG n 1 27 ASP n 1 28 ASN n 1 29 THR n 1 30 ARG n 1 31 GLU n 1 32 LEU n 1 33 ALA n 1 34 LYS n 1 35 ASN n 1 36 ILE n 1 37 THR n 1 38 PHE n 1 39 ALA n 1 40 SER n 1 41 PRO n 1 42 TYR n 1 43 CYS n 1 44 ARG n 1 45 PRO n 1 46 PRO n 1 47 VAL n 1 48 VAL n 1 49 LEU n 1 50 LEU n 1 51 SER n 1 52 ILE n 1 53 THR n 1 54 GLN n 1 55 LEU n 1 56 ASP n 1 57 VAL n 1 58 GLU n 1 59 GLN n 1 60 SER n 1 61 GLN n 1 62 ASN n 1 63 LEU n 1 64 ARG n 1 65 VAL n 1 66 ILE n 1 67 ALA n 1 68 ARG n 1 69 LEU n 1 70 TYR n 1 71 SER n 1 72 VAL n 1 73 SER n 1 74 PRO n 1 75 THR n 1 76 GLY n 1 77 PHE n 1 78 LYS n 1 79 ALA n 1 80 SER n 1 81 CYS n 1 82 TYR n 1 83 THR n 1 84 TRP n 1 85 HIS n 1 86 ASN n 1 87 THR n 1 88 LYS n 1 89 VAL n 1 90 TYR n 1 91 SER n 1 92 MET n 1 93 SER n 1 94 ILE n 1 95 SER n 1 96 TRP n 1 97 ILE n 1 98 SER n 1 99 ILE n 1 100 GLU n 1 101 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Helix aspersa' _entity_src_nat.pdbx_ncbi_taxonomy_id 6535 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LFucpa1-2DGalpb1-4LFucpa1-3[DManpb1-4DGlcpNAcb1-4]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][a1122h-1b_1-5]/1-2-3-2-1-4/a3-b1_a4-e1_b4-c1_c2-d1_e4-f1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 FUC C1 O1 1 NAG O3 HO3 sing ? 2 2 3 GAL C1 O1 2 FUC O4 HO4 sing ? 3 2 4 FUC C1 O1 3 GAL O2 HO2 sing ? 4 2 5 NAG C1 O1 1 NAG O4 HO4 sing ? 5 2 6 BMA C1 O1 5 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PCA 1 1 1 PCA PCA A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 TRP 84 84 84 TRP TRP A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ASN 101 101 101 ASN ASN A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 S NAG 201 n B 2 FUC 2 B FUC 2 S FUC 204 n B 2 GAL 3 B GAL 3 S GAL 205 n B 2 FUC 4 B FUC 4 S FUC 206 n B 2 NAG 5 B NAG 5 S NAG 202 n B 2 BMA 6 B BMA 6 S BMA 203 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT 1 201 1 ACT ACT A . D 4 A2G 1 202 1 A2G A2G A . E 5 NA 1 203 1 NA NA A . F 6 ZN 1 210 1 ZN ZN A . G 7 HOH 1 301 1 HOH HOH A . G 7 HOH 2 302 2 HOH HOH A . G 7 HOH 3 303 3 HOH HOH A . G 7 HOH 4 304 4 HOH HOH A . G 7 HOH 5 305 5 HOH HOH A . G 7 HOH 6 306 6 HOH HOH A . G 7 HOH 7 307 7 HOH HOH A . G 7 HOH 8 308 8 HOH HOH A . G 7 HOH 9 309 9 HOH HOH A . G 7 HOH 10 310 10 HOH HOH A . G 7 HOH 11 311 11 HOH HOH A . G 7 HOH 12 312 12 HOH HOH A . G 7 HOH 13 313 13 HOH HOH A . G 7 HOH 14 314 14 HOH HOH A . G 7 HOH 15 315 15 HOH HOH A . G 7 HOH 16 316 16 HOH HOH A . G 7 HOH 17 317 17 HOH HOH A . G 7 HOH 18 318 18 HOH HOH A . G 7 HOH 19 319 19 HOH HOH A . G 7 HOH 20 320 20 HOH HOH A . G 7 HOH 21 321 21 HOH HOH A . G 7 HOH 22 322 22 HOH HOH A . G 7 HOH 23 323 23 HOH HOH A . G 7 HOH 24 324 24 HOH HOH A . G 7 HOH 25 325 25 HOH HOH A . G 7 HOH 26 326 26 HOH HOH A . G 7 HOH 27 327 27 HOH HOH A . G 7 HOH 28 328 28 HOH HOH A . G 7 HOH 29 329 29 HOH HOH A . G 7 HOH 30 330 30 HOH HOH A . G 7 HOH 31 331 31 HOH HOH A . G 7 HOH 32 332 32 HOH HOH A . G 7 HOH 33 333 33 HOH HOH A . G 7 HOH 34 334 34 HOH HOH A . G 7 HOH 35 335 35 HOH HOH A . G 7 HOH 36 336 36 HOH HOH A . G 7 HOH 37 337 37 HOH HOH A . G 7 HOH 38 338 38 HOH HOH A . G 7 HOH 39 339 39 HOH HOH A . G 7 HOH 40 340 40 HOH HOH A . G 7 HOH 41 341 41 HOH HOH A . G 7 HOH 42 342 42 HOH HOH A . G 7 HOH 43 343 43 HOH HOH A . G 7 HOH 44 344 44 HOH HOH A . G 7 HOH 45 345 45 HOH HOH A . G 7 HOH 46 346 46 HOH HOH A . G 7 HOH 47 347 47 HOH HOH A . G 7 HOH 48 348 48 HOH HOH A . G 7 HOH 49 349 49 HOH HOH A . G 7 HOH 50 350 50 HOH HOH A . G 7 HOH 51 351 51 HOH HOH A . G 7 HOH 52 352 52 HOH HOH A . G 7 HOH 53 353 53 HOH HOH A . G 7 HOH 54 354 54 HOH HOH A . G 7 HOH 55 355 55 HOH HOH A . G 7 HOH 56 356 56 HOH HOH A . G 7 HOH 57 357 57 HOH HOH A . G 7 HOH 58 358 58 HOH HOH A . G 7 HOH 59 359 59 HOH HOH A . G 7 HOH 60 360 60 HOH HOH A . G 7 HOH 61 361 61 HOH HOH A . G 7 HOH 62 362 62 HOH HOH A . G 7 HOH 63 363 63 HOH HOH A . G 7 HOH 64 364 64 HOH HOH A . G 7 HOH 65 365 65 HOH HOH A . G 7 HOH 66 366 66 HOH HOH A . G 7 HOH 67 367 67 HOH HOH A . G 7 HOH 68 368 68 HOH HOH A . G 7 HOH 69 369 69 HOH HOH A . G 7 HOH 70 370 70 HOH HOH A . G 7 HOH 71 371 71 HOH HOH A . G 7 HOH 72 372 72 HOH HOH A . G 7 HOH 73 373 73 HOH HOH A . G 7 HOH 74 374 74 HOH HOH A . G 7 HOH 75 375 75 HOH HOH A . G 7 HOH 76 376 76 HOH HOH A . G 7 HOH 77 377 77 HOH HOH A . G 7 HOH 78 378 78 HOH HOH A . G 7 HOH 79 379 79 HOH HOH A . G 7 HOH 80 380 80 HOH HOH A . G 7 HOH 81 381 81 HOH HOH A . G 7 HOH 82 382 82 HOH HOH A . G 7 HOH 83 383 83 HOH HOH A . G 7 HOH 84 384 84 HOH HOH A . G 7 HOH 85 385 85 HOH HOH A . G 7 HOH 86 386 86 HOH HOH A . G 7 HOH 87 387 87 HOH HOH A . G 7 HOH 88 388 88 HOH HOH A . G 7 HOH 89 389 89 HOH HOH A . G 7 HOH 90 390 90 HOH HOH A . G 7 HOH 91 391 91 HOH HOH A . G 7 HOH 92 392 92 HOH HOH A . G 7 HOH 93 393 93 HOH HOH A . G 7 HOH 94 394 94 HOH HOH A . G 7 HOH 95 395 95 HOH HOH A . G 7 HOH 96 396 96 HOH HOH A . G 7 HOH 97 397 97 HOH HOH A . G 7 HOH 98 398 98 HOH HOH A . G 7 HOH 99 399 99 HOH HOH A . G 7 HOH 100 400 100 HOH HOH A . G 7 HOH 101 401 101 HOH HOH A . G 7 HOH 102 402 102 HOH HOH A . G 7 HOH 103 403 103 HOH HOH A . G 7 HOH 104 404 104 HOH HOH A . G 7 HOH 105 405 105 HOH HOH A . G 7 HOH 106 406 106 HOH HOH A . G 7 HOH 107 407 107 HOH HOH A . G 7 HOH 108 408 108 HOH HOH A . G 7 HOH 109 409 109 HOH HOH A . G 7 HOH 110 410 110 HOH HOH A . G 7 HOH 111 411 111 HOH HOH A . G 7 HOH 112 412 112 HOH HOH A . G 7 HOH 113 413 113 HOH HOH A . G 7 HOH 114 414 114 HOH HOH A . G 7 HOH 115 415 115 HOH HOH A . G 7 HOH 116 416 116 HOH HOH A . G 7 HOH 117 417 117 HOH HOH A . G 7 HOH 118 418 118 HOH HOH A . G 7 HOH 119 419 119 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data reduction' . ? 1 XDS 'data scaling' . ? 2 PHASER phasing . ? 3 REFMAC refinement 5.7.0032 ? 4 # _cell.entry_id 4Q56 _cell.length_a 47.900 _cell.length_b 47.900 _cell.length_c 281.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4Q56 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4Q56 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.05 M Zn(CH3COO)2, 0.1 M HEPES, pH 7.0, 40% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-07-30 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal Si111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.967 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' _diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.967 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4Q56 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 46.92 _reflns.d_resolution_high 1.38 _reflns.number_obs 25294 _reflns.number_all 25294 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.35 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.54 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.38 _reflns_shell.d_res_low 1.48 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.0114 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.54 _reflns_shell.pdbx_redundancy 10.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4Q56 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25294 _refine.ls_number_reflns_all 25294 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.92 _refine.ls_d_res_high 1.38 _refine.ls_percent_reflns_obs 99.95 _refine.ls_R_factor_obs 0.13788 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13658 _refine.ls_R_factor_R_free 0.16782 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.1 _refine.ls_number_reflns_R_free 1083 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.B_iso_mean 31.068 _refine.aniso_B[1][1] 0.59 _refine.aniso_B[2][2] 0.59 _refine.aniso_B[3][3] -1.93 _refine.aniso_B[1][2] 0.59 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 2CCV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.049 _refine.pdbx_overall_ESU_R_Free 0.048 _refine.overall_SU_ML 0.035 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.970 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 796 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 91 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1006 _refine_hist.d_res_high 1.38 _refine_hist.d_res_low 46.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.020 ? 948 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 874 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.013 2.068 ? 1309 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.876 3.002 ? 2013 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.557 5.000 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 27.939 24.054 ? 37 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.463 15.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.175 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.121 0.200 ? 167 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 994 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 197 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.936 2.785 ? 416 'X-RAY DIFFRACTION' ? r_mcbond_other 2.897 2.769 ? 414 'X-RAY DIFFRACTION' ? r_mcangle_it 3.610 4.161 ? 520 'X-RAY DIFFRACTION' ? r_mcangle_other 4.145 4.331 ? 513 'X-RAY DIFFRACTION' ? r_scbond_it 4.431 3.169 ? 529 'X-RAY DIFFRACTION' ? r_scbond_other 4.835 3.195 ? 511 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.397 4.744 ? 758 'X-RAY DIFFRACTION' ? r_long_range_B_refined 6.834 25.375 ? 1045 'X-RAY DIFFRACTION' ? r_long_range_B_other 5.301 24.168 ? 989 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 5.082 3.000 ? 1818 'X-RAY DIFFRACTION' ? r_sphericity_free 29.808 5.000 ? 49 'X-RAY DIFFRACTION' ? r_sphericity_bonded 14.734 5.000 ? 1862 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.380 _refine_ls_shell.d_res_low 1.416 _refine_ls_shell.number_reflns_R_work 1843 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 99.95 _refine_ls_shell.R_factor_R_free 0.367 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4Q56 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4Q56 _struct.title 'Structure of Helix aspersa agglutinin with natural glycosylation and N-acetyl-alpha-D-galactosamine (GalNAc)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4Q56 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'CARBOHYDRATE-BINDING PROTEIN, SUGAR BINDING PROTEIN, H-TYPE LECTIN, SNAIL MUCUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4Q56 _struct_ref.pdbx_db_accession 4Q56 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4Q56 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4Q56 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 15320 ? 1 MORE -51 ? 1 'SSA (A^2)' 33850 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 47.9000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 23.9500000000 -0.8660254038 -0.5000000000 0.0000000000 41.4826168413 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5000000000 0.8660254038 0.0000000000 23.9500000000 0.8660254038 0.5000000000 0.0000000000 -13.8275389471 0.0000000000 0.0000000000 -1.0000000000 187.6866666667 5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 27.6550778942 0.0000000000 0.0000000000 -1.0000000000 187.6866666667 6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 47.9000000000 -0.8660254038 0.5000000000 0.0000000000 27.6550778942 0.0000000000 0.0000000000 -1.0000000000 187.6866666667 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 12 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TRP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 16 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 12 _struct_conf.end_auth_comp_id TRP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 16 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 10 A CYS 81 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf2 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 43 A CYS 43 5_556 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale both ? A PCA 1 C ? ? ? 1_555 A ARG 2 N ? ? A PCA 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale one ? A ASN 35 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 35 B NAG 1 1_555 ? ? ? ? ? ? ? 1.469 ? N-Glycosylation covale3 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 5 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale5 covale both ? B FUC . O4 ? ? ? 1_555 B GAL . C1 ? ? B FUC 2 B GAL 3 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale6 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 3 B FUC 4 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale7 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 5 B BMA 6 1_555 ? ? ? ? ? ? ? 1.433 ? ? metalc1 metalc ? ? A GLN 59 O ? ? ? 1_555 E NA . NA ? ? A GLN 59 A NA 203 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc2 metalc ? ? A GLN 59 OE1 ? ? ? 1_555 E NA . NA ? ? A GLN 59 A NA 203 1_555 ? ? ? ? ? ? ? 2.526 ? ? metalc3 metalc ? ? A HIS 85 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 85 A ZN 210 1_555 ? ? ? ? ? ? ? 2.049 ? ? metalc4 metalc ? ? C ACT . O ? ? ? 1_555 F ZN . ZN ? ? A ACT 201 A ZN 210 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc5 metalc ? ? C ACT . OXT ? ? ? 1_555 F ZN . ZN ? ? A ACT 201 A ZN 210 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 203 A HOH 337 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 203 A HOH 396 1_555 ? ? ? ? ? ? ? 2.724 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 OE1 ? A GLN 59 ? A GLN 59 ? 1_555 70.1 ? 2 O ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 337 ? 1_555 79.9 ? 3 OE1 ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 337 ? 1_555 125.1 ? 4 O ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 396 ? 1_555 100.1 ? 5 OE1 ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 396 ? 1_555 54.9 ? 6 O ? G HOH . ? A HOH 337 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 396 ? 1_555 180.0 ? 7 NE2 ? A HIS 85 ? A HIS 85 ? 1_555 ZN ? F ZN . ? A ZN 210 ? 1_555 O ? C ACT . ? A ACT 201 ? 1_555 111.7 ? 8 NE2 ? A HIS 85 ? A HIS 85 ? 1_555 ZN ? F ZN . ? A ZN 210 ? 1_555 OXT ? C ACT . ? A ACT 201 ? 1_555 91.4 ? 9 O ? C ACT . ? A ACT 201 ? 1_555 ZN ? F ZN . ? A ZN 210 ? 1_555 OXT ? C ACT . ? A ACT 201 ? 1_555 55.4 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 PCA A 1 ? . . . . PCA A 1 ? 1_555 . . . . . . . GLN 1 PCA 'Pyrrolidone carboxylic acid' 'Named protein modification' 2 NAG B . ? ASN A 35 ? NAG B 1 ? 1_555 ASN A 35 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 10 ? CYS A 81 ? CYS A 10 ? 1_555 CYS A 81 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 43 ? CYS A 43 ? CYS A 43 ? 1_555 CYS A 43 ? 5_556 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? ASP A 9 ? VAL A 3 ASP A 9 A 2 VAL A 89 ? ILE A 99 ? VAL A 89 ILE A 99 A 3 VAL A 47 ? VAL A 57 ? VAL A 47 VAL A 57 B 1 ALA A 17 ? LYS A 18 ? ALA A 17 LYS A 18 B 2 ARG A 30 ? THR A 37 ? ARG A 30 THR A 37 B 3 GLY A 76 ? THR A 83 ? GLY A 76 THR A 83 B 4 ILE A 66 ? VAL A 72 ? ILE A 66 VAL A 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 8 O ILE A 94 ? O ILE A 94 A 2 3 O TYR A 90 ? O TYR A 90 N ASP A 56 ? N ASP A 56 B 1 2 N ALA A 17 ? N ALA A 17 O GLU A 31 ? O GLU A 31 B 2 3 N ILE A 36 ? N ILE A 36 O PHE A 77 ? O PHE A 77 B 3 4 O SER A 80 ? O SER A 80 N ARG A 68 ? N ARG A 68 # _pdbx_entry_details.entry_id 4Q56 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 411 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 413 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 85 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 50.85 _pdbx_validate_torsion.psi -137.80 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 35 A ASN 35 ? ASN 'GLYCOSYLATION SITE' 2 A PCA 1 A PCA 1 ? GLN 'PYROGLUTAMIC ACID' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 203 ? E NA . 2 1 A ZN 210 ? F ZN . 3 1 A HOH 337 ? G HOH . 4 1 A HOH 396 ? G HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 ACT C C N N 31 ACT O O N N 32 ACT OXT O N N 33 ACT CH3 C N N 34 ACT H1 H N N 35 ACT H2 H N N 36 ACT H3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 BMA C1 C N R 111 BMA C2 C N S 112 BMA C3 C N S 113 BMA C4 C N S 114 BMA C5 C N R 115 BMA C6 C N N 116 BMA O1 O N N 117 BMA O2 O N N 118 BMA O3 O N N 119 BMA O4 O N N 120 BMA O5 O N N 121 BMA O6 O N N 122 BMA H1 H N N 123 BMA H2 H N N 124 BMA H3 H N N 125 BMA H4 H N N 126 BMA H5 H N N 127 BMA H61 H N N 128 BMA H62 H N N 129 BMA HO1 H N N 130 BMA HO2 H N N 131 BMA HO3 H N N 132 BMA HO4 H N N 133 BMA HO6 H N N 134 CYS N N N N 135 CYS CA C N R 136 CYS C C N N 137 CYS O O N N 138 CYS CB C N N 139 CYS SG S N N 140 CYS OXT O N N 141 CYS H H N N 142 CYS H2 H N N 143 CYS HA H N N 144 CYS HB2 H N N 145 CYS HB3 H N N 146 CYS HG H N N 147 CYS HXT H N N 148 FUC C1 C N R 149 FUC C2 C N S 150 FUC C3 C N R 151 FUC C4 C N S 152 FUC C5 C N S 153 FUC C6 C N N 154 FUC O1 O N N 155 FUC O2 O N N 156 FUC O3 O N N 157 FUC O4 O N N 158 FUC O5 O N N 159 FUC H1 H N N 160 FUC H2 H N N 161 FUC H3 H N N 162 FUC H4 H N N 163 FUC H5 H N N 164 FUC H61 H N N 165 FUC H62 H N N 166 FUC H63 H N N 167 FUC HO1 H N N 168 FUC HO2 H N N 169 FUC HO3 H N N 170 FUC HO4 H N N 171 GAL C1 C N R 172 GAL C2 C N R 173 GAL C3 C N S 174 GAL C4 C N R 175 GAL C5 C N R 176 GAL C6 C N N 177 GAL O1 O N N 178 GAL O2 O N N 179 GAL O3 O N N 180 GAL O4 O N N 181 GAL O5 O N N 182 GAL O6 O N N 183 GAL H1 H N N 184 GAL H2 H N N 185 GAL H3 H N N 186 GAL H4 H N N 187 GAL H5 H N N 188 GAL H61 H N N 189 GAL H62 H N N 190 GAL HO1 H N N 191 GAL HO2 H N N 192 GAL HO3 H N N 193 GAL HO4 H N N 194 GAL HO6 H N N 195 GLN N N N N 196 GLN CA C N S 197 GLN C C N N 198 GLN O O N N 199 GLN CB C N N 200 GLN CG C N N 201 GLN CD C N N 202 GLN OE1 O N N 203 GLN NE2 N N N 204 GLN OXT O N N 205 GLN H H N N 206 GLN H2 H N N 207 GLN HA H N N 208 GLN HB2 H N N 209 GLN HB3 H N N 210 GLN HG2 H N N 211 GLN HG3 H N N 212 GLN HE21 H N N 213 GLN HE22 H N N 214 GLN HXT H N N 215 GLU N N N N 216 GLU CA C N S 217 GLU C C N N 218 GLU O O N N 219 GLU CB C N N 220 GLU CG C N N 221 GLU CD C N N 222 GLU OE1 O N N 223 GLU OE2 O N N 224 GLU OXT O N N 225 GLU H H N N 226 GLU H2 H N N 227 GLU HA H N N 228 GLU HB2 H N N 229 GLU HB3 H N N 230 GLU HG2 H N N 231 GLU HG3 H N N 232 GLU HE2 H N N 233 GLU HXT H N N 234 GLY N N N N 235 GLY CA C N N 236 GLY C C N N 237 GLY O O N N 238 GLY OXT O N N 239 GLY H H N N 240 GLY H2 H N N 241 GLY HA2 H N N 242 GLY HA3 H N N 243 GLY HXT H N N 244 HIS N N N N 245 HIS CA C N S 246 HIS C C N N 247 HIS O O N N 248 HIS CB C N N 249 HIS CG C Y N 250 HIS ND1 N Y N 251 HIS CD2 C Y N 252 HIS CE1 C Y N 253 HIS NE2 N Y N 254 HIS OXT O N N 255 HIS H H N N 256 HIS H2 H N N 257 HIS HA H N N 258 HIS HB2 H N N 259 HIS HB3 H N N 260 HIS HD1 H N N 261 HIS HD2 H N N 262 HIS HE1 H N N 263 HIS HE2 H N N 264 HIS HXT H N N 265 HOH O O N N 266 HOH H1 H N N 267 HOH H2 H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MET N N N N 338 MET CA C N S 339 MET C C N N 340 MET O O N N 341 MET CB C N N 342 MET CG C N N 343 MET SD S N N 344 MET CE C N N 345 MET OXT O N N 346 MET H H N N 347 MET H2 H N N 348 MET HA H N N 349 MET HB2 H N N 350 MET HB3 H N N 351 MET HG2 H N N 352 MET HG3 H N N 353 MET HE1 H N N 354 MET HE2 H N N 355 MET HE3 H N N 356 MET HXT H N N 357 NA NA NA N N 358 NAG C1 C N R 359 NAG C2 C N R 360 NAG C3 C N R 361 NAG C4 C N S 362 NAG C5 C N R 363 NAG C6 C N N 364 NAG C7 C N N 365 NAG C8 C N N 366 NAG N2 N N N 367 NAG O1 O N N 368 NAG O3 O N N 369 NAG O4 O N N 370 NAG O5 O N N 371 NAG O6 O N N 372 NAG O7 O N N 373 NAG H1 H N N 374 NAG H2 H N N 375 NAG H3 H N N 376 NAG H4 H N N 377 NAG H5 H N N 378 NAG H61 H N N 379 NAG H62 H N N 380 NAG H81 H N N 381 NAG H82 H N N 382 NAG H83 H N N 383 NAG HN2 H N N 384 NAG HO1 H N N 385 NAG HO3 H N N 386 NAG HO4 H N N 387 NAG HO6 H N N 388 PCA N N N N 389 PCA CA C N S 390 PCA CB C N N 391 PCA CG C N N 392 PCA CD C N N 393 PCA OE O N N 394 PCA C C N N 395 PCA O O N N 396 PCA OXT O N N 397 PCA H H N N 398 PCA HA H N N 399 PCA HB2 H N N 400 PCA HB3 H N N 401 PCA HG2 H N N 402 PCA HG3 H N N 403 PCA HXT H N N 404 PHE N N N N 405 PHE CA C N S 406 PHE C C N N 407 PHE O O N N 408 PHE CB C N N 409 PHE CG C Y N 410 PHE CD1 C Y N 411 PHE CD2 C Y N 412 PHE CE1 C Y N 413 PHE CE2 C Y N 414 PHE CZ C Y N 415 PHE OXT O N N 416 PHE H H N N 417 PHE H2 H N N 418 PHE HA H N N 419 PHE HB2 H N N 420 PHE HB3 H N N 421 PHE HD1 H N N 422 PHE HD2 H N N 423 PHE HE1 H N N 424 PHE HE2 H N N 425 PHE HZ H N N 426 PHE HXT H N N 427 PRO N N N N 428 PRO CA C N S 429 PRO C C N N 430 PRO O O N N 431 PRO CB C N N 432 PRO CG C N N 433 PRO CD C N N 434 PRO OXT O N N 435 PRO H H N N 436 PRO HA H N N 437 PRO HB2 H N N 438 PRO HB3 H N N 439 PRO HG2 H N N 440 PRO HG3 H N N 441 PRO HD2 H N N 442 PRO HD3 H N N 443 PRO HXT H N N 444 SER N N N N 445 SER CA C N S 446 SER C C N N 447 SER O O N N 448 SER CB C N N 449 SER OG O N N 450 SER OXT O N N 451 SER H H N N 452 SER H2 H N N 453 SER HA H N N 454 SER HB2 H N N 455 SER HB3 H N N 456 SER HG H N N 457 SER HXT H N N 458 THR N N N N 459 THR CA C N S 460 THR C C N N 461 THR O O N N 462 THR CB C N R 463 THR OG1 O N N 464 THR CG2 C N N 465 THR OXT O N N 466 THR H H N N 467 THR H2 H N N 468 THR HA H N N 469 THR HB H N N 470 THR HG1 H N N 471 THR HG21 H N N 472 THR HG22 H N N 473 THR HG23 H N N 474 THR HXT H N N 475 TRP N N N N 476 TRP CA C N S 477 TRP C C N N 478 TRP O O N N 479 TRP CB C N N 480 TRP CG C Y N 481 TRP CD1 C Y N 482 TRP CD2 C Y N 483 TRP NE1 N Y N 484 TRP CE2 C Y N 485 TRP CE3 C Y N 486 TRP CZ2 C Y N 487 TRP CZ3 C Y N 488 TRP CH2 C Y N 489 TRP OXT O N N 490 TRP H H N N 491 TRP H2 H N N 492 TRP HA H N N 493 TRP HB2 H N N 494 TRP HB3 H N N 495 TRP HD1 H N N 496 TRP HE1 H N N 497 TRP HE3 H N N 498 TRP HZ2 H N N 499 TRP HZ3 H N N 500 TRP HH2 H N N 501 TRP HXT H N N 502 TYR N N N N 503 TYR CA C N S 504 TYR C C N N 505 TYR O O N N 506 TYR CB C N N 507 TYR CG C Y N 508 TYR CD1 C Y N 509 TYR CD2 C Y N 510 TYR CE1 C Y N 511 TYR CE2 C Y N 512 TYR CZ C Y N 513 TYR OH O N N 514 TYR OXT O N N 515 TYR H H N N 516 TYR H2 H N N 517 TYR HA H N N 518 TYR HB2 H N N 519 TYR HB3 H N N 520 TYR HD1 H N N 521 TYR HD2 H N N 522 TYR HE1 H N N 523 TYR HE2 H N N 524 TYR HH H N N 525 TYR HXT H N N 526 VAL N N N N 527 VAL CA C N S 528 VAL C C N N 529 VAL O O N N 530 VAL CB C N N 531 VAL CG1 C N N 532 VAL CG2 C N N 533 VAL OXT O N N 534 VAL H H N N 535 VAL H2 H N N 536 VAL HA H N N 537 VAL HB H N N 538 VAL HG11 H N N 539 VAL HG12 H N N 540 VAL HG13 H N N 541 VAL HG21 H N N 542 VAL HG22 H N N 543 VAL HG23 H N N 544 VAL HXT H N N 545 ZN ZN ZN N N 546 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 ACT C O doub N N 31 ACT C OXT sing N N 32 ACT C CH3 sing N N 33 ACT CH3 H1 sing N N 34 ACT CH3 H2 sing N N 35 ACT CH3 H3 sing N N 36 ALA N CA sing N N 37 ALA N H sing N N 38 ALA N H2 sing N N 39 ALA CA C sing N N 40 ALA CA CB sing N N 41 ALA CA HA sing N N 42 ALA C O doub N N 43 ALA C OXT sing N N 44 ALA CB HB1 sing N N 45 ALA CB HB2 sing N N 46 ALA CB HB3 sing N N 47 ALA OXT HXT sing N N 48 ARG N CA sing N N 49 ARG N H sing N N 50 ARG N H2 sing N N 51 ARG CA C sing N N 52 ARG CA CB sing N N 53 ARG CA HA sing N N 54 ARG C O doub N N 55 ARG C OXT sing N N 56 ARG CB CG sing N N 57 ARG CB HB2 sing N N 58 ARG CB HB3 sing N N 59 ARG CG CD sing N N 60 ARG CG HG2 sing N N 61 ARG CG HG3 sing N N 62 ARG CD NE sing N N 63 ARG CD HD2 sing N N 64 ARG CD HD3 sing N N 65 ARG NE CZ sing N N 66 ARG NE HE sing N N 67 ARG CZ NH1 sing N N 68 ARG CZ NH2 doub N N 69 ARG NH1 HH11 sing N N 70 ARG NH1 HH12 sing N N 71 ARG NH2 HH21 sing N N 72 ARG NH2 HH22 sing N N 73 ARG OXT HXT sing N N 74 ASN N CA sing N N 75 ASN N H sing N N 76 ASN N H2 sing N N 77 ASN CA C sing N N 78 ASN CA CB sing N N 79 ASN CA HA sing N N 80 ASN C O doub N N 81 ASN C OXT sing N N 82 ASN CB CG sing N N 83 ASN CB HB2 sing N N 84 ASN CB HB3 sing N N 85 ASN CG OD1 doub N N 86 ASN CG ND2 sing N N 87 ASN ND2 HD21 sing N N 88 ASN ND2 HD22 sing N N 89 ASN OXT HXT sing N N 90 ASP N CA sing N N 91 ASP N H sing N N 92 ASP N H2 sing N N 93 ASP CA C sing N N 94 ASP CA CB sing N N 95 ASP CA HA sing N N 96 ASP C O doub N N 97 ASP C OXT sing N N 98 ASP CB CG sing N N 99 ASP CB HB2 sing N N 100 ASP CB HB3 sing N N 101 ASP CG OD1 doub N N 102 ASP CG OD2 sing N N 103 ASP OD2 HD2 sing N N 104 ASP OXT HXT sing N N 105 BMA C1 C2 sing N N 106 BMA C1 O1 sing N N 107 BMA C1 O5 sing N N 108 BMA C1 H1 sing N N 109 BMA C2 C3 sing N N 110 BMA C2 O2 sing N N 111 BMA C2 H2 sing N N 112 BMA C3 C4 sing N N 113 BMA C3 O3 sing N N 114 BMA C3 H3 sing N N 115 BMA C4 C5 sing N N 116 BMA C4 O4 sing N N 117 BMA C4 H4 sing N N 118 BMA C5 C6 sing N N 119 BMA C5 O5 sing N N 120 BMA C5 H5 sing N N 121 BMA C6 O6 sing N N 122 BMA C6 H61 sing N N 123 BMA C6 H62 sing N N 124 BMA O1 HO1 sing N N 125 BMA O2 HO2 sing N N 126 BMA O3 HO3 sing N N 127 BMA O4 HO4 sing N N 128 BMA O6 HO6 sing N N 129 CYS N CA sing N N 130 CYS N H sing N N 131 CYS N H2 sing N N 132 CYS CA C sing N N 133 CYS CA CB sing N N 134 CYS CA HA sing N N 135 CYS C O doub N N 136 CYS C OXT sing N N 137 CYS CB SG sing N N 138 CYS CB HB2 sing N N 139 CYS CB HB3 sing N N 140 CYS SG HG sing N N 141 CYS OXT HXT sing N N 142 FUC C1 C2 sing N N 143 FUC C1 O1 sing N N 144 FUC C1 O5 sing N N 145 FUC C1 H1 sing N N 146 FUC C2 C3 sing N N 147 FUC C2 O2 sing N N 148 FUC C2 H2 sing N N 149 FUC C3 C4 sing N N 150 FUC C3 O3 sing N N 151 FUC C3 H3 sing N N 152 FUC C4 C5 sing N N 153 FUC C4 O4 sing N N 154 FUC C4 H4 sing N N 155 FUC C5 C6 sing N N 156 FUC C5 O5 sing N N 157 FUC C5 H5 sing N N 158 FUC C6 H61 sing N N 159 FUC C6 H62 sing N N 160 FUC C6 H63 sing N N 161 FUC O1 HO1 sing N N 162 FUC O2 HO2 sing N N 163 FUC O3 HO3 sing N N 164 FUC O4 HO4 sing N N 165 GAL C1 C2 sing N N 166 GAL C1 O1 sing N N 167 GAL C1 O5 sing N N 168 GAL C1 H1 sing N N 169 GAL C2 C3 sing N N 170 GAL C2 O2 sing N N 171 GAL C2 H2 sing N N 172 GAL C3 C4 sing N N 173 GAL C3 O3 sing N N 174 GAL C3 H3 sing N N 175 GAL C4 C5 sing N N 176 GAL C4 O4 sing N N 177 GAL C4 H4 sing N N 178 GAL C5 C6 sing N N 179 GAL C5 O5 sing N N 180 GAL C5 H5 sing N N 181 GAL C6 O6 sing N N 182 GAL C6 H61 sing N N 183 GAL C6 H62 sing N N 184 GAL O1 HO1 sing N N 185 GAL O2 HO2 sing N N 186 GAL O3 HO3 sing N N 187 GAL O4 HO4 sing N N 188 GAL O6 HO6 sing N N 189 GLN N CA sing N N 190 GLN N H sing N N 191 GLN N H2 sing N N 192 GLN CA C sing N N 193 GLN CA CB sing N N 194 GLN CA HA sing N N 195 GLN C O doub N N 196 GLN C OXT sing N N 197 GLN CB CG sing N N 198 GLN CB HB2 sing N N 199 GLN CB HB3 sing N N 200 GLN CG CD sing N N 201 GLN CG HG2 sing N N 202 GLN CG HG3 sing N N 203 GLN CD OE1 doub N N 204 GLN CD NE2 sing N N 205 GLN NE2 HE21 sing N N 206 GLN NE2 HE22 sing N N 207 GLN OXT HXT sing N N 208 GLU N CA sing N N 209 GLU N H sing N N 210 GLU N H2 sing N N 211 GLU CA C sing N N 212 GLU CA CB sing N N 213 GLU CA HA sing N N 214 GLU C O doub N N 215 GLU C OXT sing N N 216 GLU CB CG sing N N 217 GLU CB HB2 sing N N 218 GLU CB HB3 sing N N 219 GLU CG CD sing N N 220 GLU CG HG2 sing N N 221 GLU CG HG3 sing N N 222 GLU CD OE1 doub N N 223 GLU CD OE2 sing N N 224 GLU OE2 HE2 sing N N 225 GLU OXT HXT sing N N 226 GLY N CA sing N N 227 GLY N H sing N N 228 GLY N H2 sing N N 229 GLY CA C sing N N 230 GLY CA HA2 sing N N 231 GLY CA HA3 sing N N 232 GLY C O doub N N 233 GLY C OXT sing N N 234 GLY OXT HXT sing N N 235 HIS N CA sing N N 236 HIS N H sing N N 237 HIS N H2 sing N N 238 HIS CA C sing N N 239 HIS CA CB sing N N 240 HIS CA HA sing N N 241 HIS C O doub N N 242 HIS C OXT sing N N 243 HIS CB CG sing N N 244 HIS CB HB2 sing N N 245 HIS CB HB3 sing N N 246 HIS CG ND1 sing Y N 247 HIS CG CD2 doub Y N 248 HIS ND1 CE1 doub Y N 249 HIS ND1 HD1 sing N N 250 HIS CD2 NE2 sing Y N 251 HIS CD2 HD2 sing N N 252 HIS CE1 NE2 sing Y N 253 HIS CE1 HE1 sing N N 254 HIS NE2 HE2 sing N N 255 HIS OXT HXT sing N N 256 HOH O H1 sing N N 257 HOH O H2 sing N N 258 ILE N CA sing N N 259 ILE N H sing N N 260 ILE N H2 sing N N 261 ILE CA C sing N N 262 ILE CA CB sing N N 263 ILE CA HA sing N N 264 ILE C O doub N N 265 ILE C OXT sing N N 266 ILE CB CG1 sing N N 267 ILE CB CG2 sing N N 268 ILE CB HB sing N N 269 ILE CG1 CD1 sing N N 270 ILE CG1 HG12 sing N N 271 ILE CG1 HG13 sing N N 272 ILE CG2 HG21 sing N N 273 ILE CG2 HG22 sing N N 274 ILE CG2 HG23 sing N N 275 ILE CD1 HD11 sing N N 276 ILE CD1 HD12 sing N N 277 ILE CD1 HD13 sing N N 278 ILE OXT HXT sing N N 279 LEU N CA sing N N 280 LEU N H sing N N 281 LEU N H2 sing N N 282 LEU CA C sing N N 283 LEU CA CB sing N N 284 LEU CA HA sing N N 285 LEU C O doub N N 286 LEU C OXT sing N N 287 LEU CB CG sing N N 288 LEU CB HB2 sing N N 289 LEU CB HB3 sing N N 290 LEU CG CD1 sing N N 291 LEU CG CD2 sing N N 292 LEU CG HG sing N N 293 LEU CD1 HD11 sing N N 294 LEU CD1 HD12 sing N N 295 LEU CD1 HD13 sing N N 296 LEU CD2 HD21 sing N N 297 LEU CD2 HD22 sing N N 298 LEU CD2 HD23 sing N N 299 LEU OXT HXT sing N N 300 LYS N CA sing N N 301 LYS N H sing N N 302 LYS N H2 sing N N 303 LYS CA C sing N N 304 LYS CA CB sing N N 305 LYS CA HA sing N N 306 LYS C O doub N N 307 LYS C OXT sing N N 308 LYS CB CG sing N N 309 LYS CB HB2 sing N N 310 LYS CB HB3 sing N N 311 LYS CG CD sing N N 312 LYS CG HG2 sing N N 313 LYS CG HG3 sing N N 314 LYS CD CE sing N N 315 LYS CD HD2 sing N N 316 LYS CD HD3 sing N N 317 LYS CE NZ sing N N 318 LYS CE HE2 sing N N 319 LYS CE HE3 sing N N 320 LYS NZ HZ1 sing N N 321 LYS NZ HZ2 sing N N 322 LYS NZ HZ3 sing N N 323 LYS OXT HXT sing N N 324 MET N CA sing N N 325 MET N H sing N N 326 MET N H2 sing N N 327 MET CA C sing N N 328 MET CA CB sing N N 329 MET CA HA sing N N 330 MET C O doub N N 331 MET C OXT sing N N 332 MET CB CG sing N N 333 MET CB HB2 sing N N 334 MET CB HB3 sing N N 335 MET CG SD sing N N 336 MET CG HG2 sing N N 337 MET CG HG3 sing N N 338 MET SD CE sing N N 339 MET CE HE1 sing N N 340 MET CE HE2 sing N N 341 MET CE HE3 sing N N 342 MET OXT HXT sing N N 343 NAG C1 C2 sing N N 344 NAG C1 O1 sing N N 345 NAG C1 O5 sing N N 346 NAG C1 H1 sing N N 347 NAG C2 C3 sing N N 348 NAG C2 N2 sing N N 349 NAG C2 H2 sing N N 350 NAG C3 C4 sing N N 351 NAG C3 O3 sing N N 352 NAG C3 H3 sing N N 353 NAG C4 C5 sing N N 354 NAG C4 O4 sing N N 355 NAG C4 H4 sing N N 356 NAG C5 C6 sing N N 357 NAG C5 O5 sing N N 358 NAG C5 H5 sing N N 359 NAG C6 O6 sing N N 360 NAG C6 H61 sing N N 361 NAG C6 H62 sing N N 362 NAG C7 C8 sing N N 363 NAG C7 N2 sing N N 364 NAG C7 O7 doub N N 365 NAG C8 H81 sing N N 366 NAG C8 H82 sing N N 367 NAG C8 H83 sing N N 368 NAG N2 HN2 sing N N 369 NAG O1 HO1 sing N N 370 NAG O3 HO3 sing N N 371 NAG O4 HO4 sing N N 372 NAG O6 HO6 sing N N 373 PCA N CA sing N N 374 PCA N CD sing N N 375 PCA N H sing N N 376 PCA CA CB sing N N 377 PCA CA C sing N N 378 PCA CA HA sing N N 379 PCA CB CG sing N N 380 PCA CB HB2 sing N N 381 PCA CB HB3 sing N N 382 PCA CG CD sing N N 383 PCA CG HG2 sing N N 384 PCA CG HG3 sing N N 385 PCA CD OE doub N N 386 PCA C O doub N N 387 PCA C OXT sing N N 388 PCA OXT HXT sing N N 389 PHE N CA sing N N 390 PHE N H sing N N 391 PHE N H2 sing N N 392 PHE CA C sing N N 393 PHE CA CB sing N N 394 PHE CA HA sing N N 395 PHE C O doub N N 396 PHE C OXT sing N N 397 PHE CB CG sing N N 398 PHE CB HB2 sing N N 399 PHE CB HB3 sing N N 400 PHE CG CD1 doub Y N 401 PHE CG CD2 sing Y N 402 PHE CD1 CE1 sing Y N 403 PHE CD1 HD1 sing N N 404 PHE CD2 CE2 doub Y N 405 PHE CD2 HD2 sing N N 406 PHE CE1 CZ doub Y N 407 PHE CE1 HE1 sing N N 408 PHE CE2 CZ sing Y N 409 PHE CE2 HE2 sing N N 410 PHE CZ HZ sing N N 411 PHE OXT HXT sing N N 412 PRO N CA sing N N 413 PRO N CD sing N N 414 PRO N H sing N N 415 PRO CA C sing N N 416 PRO CA CB sing N N 417 PRO CA HA sing N N 418 PRO C O doub N N 419 PRO C OXT sing N N 420 PRO CB CG sing N N 421 PRO CB HB2 sing N N 422 PRO CB HB3 sing N N 423 PRO CG CD sing N N 424 PRO CG HG2 sing N N 425 PRO CG HG3 sing N N 426 PRO CD HD2 sing N N 427 PRO CD HD3 sing N N 428 PRO OXT HXT sing N N 429 SER N CA sing N N 430 SER N H sing N N 431 SER N H2 sing N N 432 SER CA C sing N N 433 SER CA CB sing N N 434 SER CA HA sing N N 435 SER C O doub N N 436 SER C OXT sing N N 437 SER CB OG sing N N 438 SER CB HB2 sing N N 439 SER CB HB3 sing N N 440 SER OG HG sing N N 441 SER OXT HXT sing N N 442 THR N CA sing N N 443 THR N H sing N N 444 THR N H2 sing N N 445 THR CA C sing N N 446 THR CA CB sing N N 447 THR CA HA sing N N 448 THR C O doub N N 449 THR C OXT sing N N 450 THR CB OG1 sing N N 451 THR CB CG2 sing N N 452 THR CB HB sing N N 453 THR OG1 HG1 sing N N 454 THR CG2 HG21 sing N N 455 THR CG2 HG22 sing N N 456 THR CG2 HG23 sing N N 457 THR OXT HXT sing N N 458 TRP N CA sing N N 459 TRP N H sing N N 460 TRP N H2 sing N N 461 TRP CA C sing N N 462 TRP CA CB sing N N 463 TRP CA HA sing N N 464 TRP C O doub N N 465 TRP C OXT sing N N 466 TRP CB CG sing N N 467 TRP CB HB2 sing N N 468 TRP CB HB3 sing N N 469 TRP CG CD1 doub Y N 470 TRP CG CD2 sing Y N 471 TRP CD1 NE1 sing Y N 472 TRP CD1 HD1 sing N N 473 TRP CD2 CE2 doub Y N 474 TRP CD2 CE3 sing Y N 475 TRP NE1 CE2 sing Y N 476 TRP NE1 HE1 sing N N 477 TRP CE2 CZ2 sing Y N 478 TRP CE3 CZ3 doub Y N 479 TRP CE3 HE3 sing N N 480 TRP CZ2 CH2 doub Y N 481 TRP CZ2 HZ2 sing N N 482 TRP CZ3 CH2 sing Y N 483 TRP CZ3 HZ3 sing N N 484 TRP CH2 HH2 sing N N 485 TRP OXT HXT sing N N 486 TYR N CA sing N N 487 TYR N H sing N N 488 TYR N H2 sing N N 489 TYR CA C sing N N 490 TYR CA CB sing N N 491 TYR CA HA sing N N 492 TYR C O doub N N 493 TYR C OXT sing N N 494 TYR CB CG sing N N 495 TYR CB HB2 sing N N 496 TYR CB HB3 sing N N 497 TYR CG CD1 doub Y N 498 TYR CG CD2 sing Y N 499 TYR CD1 CE1 sing Y N 500 TYR CD1 HD1 sing N N 501 TYR CD2 CE2 doub Y N 502 TYR CD2 HD2 sing N N 503 TYR CE1 CZ doub Y N 504 TYR CE1 HE1 sing N N 505 TYR CE2 CZ sing Y N 506 TYR CE2 HE2 sing N N 507 TYR CZ OH sing N N 508 TYR OH HH sing N N 509 TYR OXT HXT sing N N 510 VAL N CA sing N N 511 VAL N H sing N N 512 VAL N H2 sing N N 513 VAL CA C sing N N 514 VAL CA CB sing N N 515 VAL CA HA sing N N 516 VAL C O doub N N 517 VAL C OXT sing N N 518 VAL CB CG1 sing N N 519 VAL CB CG2 sing N N 520 VAL CB HB sing N N 521 VAL CG1 HG11 sing N N 522 VAL CG1 HG12 sing N N 523 VAL CG1 HG13 sing N N 524 VAL CG2 HG21 sing N N 525 VAL CG2 HG22 sing N N 526 VAL CG2 HG23 sing N N 527 VAL OXT HXT sing N N 528 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 FUC 2 n 2 GAL 3 n 2 FUC 4 n 2 NAG 5 n 2 BMA 6 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CCV _pdbx_initial_refinement_model.details 'PDB entry 2CCV' # _atom_sites.entry_id 4Q56 _atom_sites.fract_transf_matrix[1][1] 0.020877 _atom_sites.fract_transf_matrix[1][2] 0.012053 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024106 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S ZN # loop_