data_4Q56
#
_entry.id 4Q56
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4Q56 pdb_00004q56 10.2210/pdb4q56/pdb
RCSB RCSB085617 ? ?
WWPDB D_1000085617 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-10-14
2 'Structure model' 1 1 2015-10-28
3 'Structure model' 1 2 2018-03-07
4 'Structure model' 2 0 2019-12-25
5 'Structure model' 3 0 2020-07-29
6 'Structure model' 3 1 2023-09-20
7 'Structure model' 3 2 2024-11-06
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Derived calculations'
5 4 'Structure model' 'Polymer sequence'
6 5 'Structure model' 'Atomic model'
7 5 'Structure model' 'Data collection'
8 5 'Structure model' 'Derived calculations'
9 5 'Structure model' 'Structure summary'
10 6 'Structure model' 'Data collection'
11 6 'Structure model' 'Database references'
12 6 'Structure model' 'Derived calculations'
13 6 'Structure model' 'Refinement description'
14 6 'Structure model' 'Structure summary'
15 7 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' diffrn_source
2 4 'Structure model' chem_comp
3 4 'Structure model' entity_poly
4 4 'Structure model' pdbx_struct_mod_residue
5 4 'Structure model' struct_conn
6 5 'Structure model' atom_site
7 5 'Structure model' atom_site_anisotrop
8 5 'Structure model' chem_comp
9 5 'Structure model' entity
10 5 'Structure model' pdbx_branch_scheme
11 5 'Structure model' pdbx_chem_comp_identifier
12 5 'Structure model' pdbx_entity_branch
13 5 'Structure model' pdbx_entity_branch_descriptor
14 5 'Structure model' pdbx_entity_branch_link
15 5 'Structure model' pdbx_entity_branch_list
16 5 'Structure model' pdbx_entity_nonpoly
17 5 'Structure model' pdbx_nonpoly_scheme
18 5 'Structure model' pdbx_struct_assembly_gen
19 5 'Structure model' pdbx_struct_conn_angle
20 5 'Structure model' pdbx_struct_special_symmetry
21 5 'Structure model' struct_asym
22 5 'Structure model' struct_conn
23 5 'Structure model' struct_site
24 5 'Structure model' struct_site_gen
25 6 'Structure model' chem_comp
26 6 'Structure model' chem_comp_atom
27 6 'Structure model' chem_comp_bond
28 6 'Structure model' database_2
29 6 'Structure model' pdbx_initial_refinement_model
30 6 'Structure model' struct_conn
31 7 'Structure model' pdbx_entry_details
32 7 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
2 4 'Structure model' '_chem_comp.type'
3 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
4 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id'
5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
6 5 'Structure model' '_atom_site.B_iso_or_equiv'
7 5 'Structure model' '_atom_site.Cartn_x'
8 5 'Structure model' '_atom_site.Cartn_y'
9 5 'Structure model' '_atom_site.Cartn_z'
10 5 'Structure model' '_atom_site.auth_asym_id'
11 5 'Structure model' '_atom_site.auth_atom_id'
12 5 'Structure model' '_atom_site.auth_comp_id'
13 5 'Structure model' '_atom_site.auth_seq_id'
14 5 'Structure model' '_atom_site.label_asym_id'
15 5 'Structure model' '_atom_site.label_atom_id'
16 5 'Structure model' '_atom_site.label_comp_id'
17 5 'Structure model' '_atom_site.label_entity_id'
18 5 'Structure model' '_atom_site.occupancy'
19 5 'Structure model' '_atom_site.type_symbol'
20 5 'Structure model' '_atom_site_anisotrop.U[1][1]'
21 5 'Structure model' '_atom_site_anisotrop.U[1][2]'
22 5 'Structure model' '_atom_site_anisotrop.U[1][3]'
23 5 'Structure model' '_atom_site_anisotrop.U[2][2]'
24 5 'Structure model' '_atom_site_anisotrop.U[2][3]'
25 5 'Structure model' '_atom_site_anisotrop.U[3][3]'
26 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
27 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
28 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id'
29 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id'
30 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id'
31 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
32 5 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id'
33 5 'Structure model' '_atom_site_anisotrop.type_symbol'
34 5 'Structure model' '_chem_comp.name'
35 5 'Structure model' '_chem_comp.type'
36 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id'
44 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
45 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
46 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id'
47 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id'
48 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
49 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
50 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
51 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
52 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
53 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
54 5 'Structure model' '_pdbx_struct_conn_angle.value'
55 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
56 5 'Structure model' '_struct_conn.pdbx_dist_value'
57 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
58 5 'Structure model' '_struct_conn.pdbx_role'
59 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
60 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
61 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
62 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
63 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
64 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
65 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
66 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
67 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
68 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
69 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
70 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
71 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
72 6 'Structure model' '_chem_comp.pdbx_synonyms'
73 6 'Structure model' '_database_2.pdbx_DOI'
74 6 'Structure model' '_database_2.pdbx_database_accession'
75 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4Q56
_pdbx_database_status.recvd_initial_deposition_date 2014-04-16
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 2CGZ . unspecified
PDB 2CGY . unspecified
PDB 2CCV . unspecified
PDB 2CE6 . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Pietrzyk, A.J.' 1
'Bujacz, A.' 2
'Bujacz, G.' 3
#
_citation.id primary
_citation.title
'Structural studies of Helix aspersa agglutinin complexed with GalNAc: A lectin that serves as a diagnostic tool.'
_citation.journal_abbrev Int.J.Biol.Macromol.
_citation.journal_volume 81
_citation.page_first 1059
_citation.page_last 1068
_citation.year 2015
_citation.journal_id_ASTM IJBMDR
_citation.country UK
_citation.journal_id_ISSN 0141-8130
_citation.journal_id_CSD 0708
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 26416237
_citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2015.09.044
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Pietrzyk, A.J.' 1 ?
primary 'Bujacz, A.' 2 ?
primary 'Mak, P.' 3 ?
primary 'Potempa, B.' 4 ?
primary 'Niedziela, T.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat 'Helix aspersa agglutinin (HAA)' 11345.768 1 ? ? ? ?
2 branched man
;alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-alpha-L-fucopyranose-(1-3)-[beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose
;
1040.964 1 ? ? ? ?
3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ?
4 non-polymer man 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 1 ? ? ? ?
5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ?
6 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ?
7 water nat water 18.015 119 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code
;(PCA)RVQSGKIDCGNDVSWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPTG
FKASCYTWHNTKVYSMSISWISIEN
;
_entity_poly.pdbx_seq_one_letter_code_can
;QRVQSGKIDCGNDVSWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPTGFKAS
CYTWHNTKVYSMSISWISIEN
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'ACETATE ION' ACT
4 2-acetamido-2-deoxy-alpha-D-galactopyranose A2G
5 'SODIUM ION' NA
6 'ZINC ION' ZN
7 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 PCA n
1 2 ARG n
1 3 VAL n
1 4 GLN n
1 5 SER n
1 6 GLY n
1 7 LYS n
1 8 ILE n
1 9 ASP n
1 10 CYS n
1 11 GLY n
1 12 ASN n
1 13 ASP n
1 14 VAL n
1 15 SER n
1 16 TRP n
1 17 ALA n
1 18 LYS n
1 19 VAL n
1 20 PRO n
1 21 SER n
1 22 ASP n
1 23 ASP n
1 24 PRO n
1 25 GLY n
1 26 ARG n
1 27 ASP n
1 28 ASN n
1 29 THR n
1 30 ARG n
1 31 GLU n
1 32 LEU n
1 33 ALA n
1 34 LYS n
1 35 ASN n
1 36 ILE n
1 37 THR n
1 38 PHE n
1 39 ALA n
1 40 SER n
1 41 PRO n
1 42 TYR n
1 43 CYS n
1 44 ARG n
1 45 PRO n
1 46 PRO n
1 47 VAL n
1 48 VAL n
1 49 LEU n
1 50 LEU n
1 51 SER n
1 52 ILE n
1 53 THR n
1 54 GLN n
1 55 LEU n
1 56 ASP n
1 57 VAL n
1 58 GLU n
1 59 GLN n
1 60 SER n
1 61 GLN n
1 62 ASN n
1 63 LEU n
1 64 ARG n
1 65 VAL n
1 66 ILE n
1 67 ALA n
1 68 ARG n
1 69 LEU n
1 70 TYR n
1 71 SER n
1 72 VAL n
1 73 SER n
1 74 PRO n
1 75 THR n
1 76 GLY n
1 77 PHE n
1 78 LYS n
1 79 ALA n
1 80 SER n
1 81 CYS n
1 82 TYR n
1 83 THR n
1 84 TRP n
1 85 HIS n
1 86 ASN n
1 87 THR n
1 88 LYS n
1 89 VAL n
1 90 TYR n
1 91 SER n
1 92 MET n
1 93 SER n
1 94 ILE n
1 95 SER n
1 96 TRP n
1 97 ILE n
1 98 SER n
1 99 ILE n
1 100 GLU n
1 101 ASN n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name ?
_entity_src_nat.pdbx_organism_scientific 'Helix aspersa'
_entity_src_nat.pdbx_ncbi_taxonomy_id 6535
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'LFucpa1-2DGalpb1-4LFucpa1-3[DManpb1-4DGlcpNAcb1-4]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0
2 2
'WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][a1122h-1b_1-5]/1-2-3-2-1-4/a3-b1_a4-e1_b4-c1_c2-d1_e4-f1'
WURCS PDB2Glycan 1.1.0
3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}'
LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 FUC C1 O1 1 NAG O3 HO3 sing ?
2 2 3 GAL C1 O1 2 FUC O4 HO4 sing ?
3 2 4 FUC C1 O1 3 GAL O2 HO2 sing ?
4 2 5 NAG C1 O1 1 NAG O4 HO4 sing ?
5 2 6 BMA C1 O1 5 NAG O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose
;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
;
'C8 H15 N O6' 221.208
ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose
'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose'
'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca
A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine
A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc
A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc
BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb
BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose
BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp
BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa
FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose
FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp
FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 PCA 1 1 1 PCA PCA A . n
A 1 2 ARG 2 2 2 ARG ARG A . n
A 1 3 VAL 3 3 3 VAL VAL A . n
A 1 4 GLN 4 4 4 GLN GLN A . n
A 1 5 SER 5 5 5 SER SER A . n
A 1 6 GLY 6 6 6 GLY GLY A . n
A 1 7 LYS 7 7 7 LYS LYS A . n
A 1 8 ILE 8 8 8 ILE ILE A . n
A 1 9 ASP 9 9 9 ASP ASP A . n
A 1 10 CYS 10 10 10 CYS CYS A . n
A 1 11 GLY 11 11 11 GLY GLY A . n
A 1 12 ASN 12 12 12 ASN ASN A . n
A 1 13 ASP 13 13 13 ASP ASP A . n
A 1 14 VAL 14 14 14 VAL VAL A . n
A 1 15 SER 15 15 15 SER SER A . n
A 1 16 TRP 16 16 16 TRP TRP A . n
A 1 17 ALA 17 17 17 ALA ALA A . n
A 1 18 LYS 18 18 18 LYS LYS A . n
A 1 19 VAL 19 19 19 VAL VAL A . n
A 1 20 PRO 20 20 20 PRO PRO A . n
A 1 21 SER 21 21 21 SER SER A . n
A 1 22 ASP 22 22 22 ASP ASP A . n
A 1 23 ASP 23 23 23 ASP ASP A . n
A 1 24 PRO 24 24 24 PRO PRO A . n
A 1 25 GLY 25 25 25 GLY GLY A . n
A 1 26 ARG 26 26 26 ARG ARG A . n
A 1 27 ASP 27 27 27 ASP ASP A . n
A 1 28 ASN 28 28 28 ASN ASN A . n
A 1 29 THR 29 29 29 THR THR A . n
A 1 30 ARG 30 30 30 ARG ARG A . n
A 1 31 GLU 31 31 31 GLU GLU A . n
A 1 32 LEU 32 32 32 LEU LEU A . n
A 1 33 ALA 33 33 33 ALA ALA A . n
A 1 34 LYS 34 34 34 LYS LYS A . n
A 1 35 ASN 35 35 35 ASN ASN A . n
A 1 36 ILE 36 36 36 ILE ILE A . n
A 1 37 THR 37 37 37 THR THR A . n
A 1 38 PHE 38 38 38 PHE PHE A . n
A 1 39 ALA 39 39 39 ALA ALA A . n
A 1 40 SER 40 40 40 SER SER A . n
A 1 41 PRO 41 41 41 PRO PRO A . n
A 1 42 TYR 42 42 42 TYR TYR A . n
A 1 43 CYS 43 43 43 CYS CYS A . n
A 1 44 ARG 44 44 44 ARG ARG A . n
A 1 45 PRO 45 45 45 PRO PRO A . n
A 1 46 PRO 46 46 46 PRO PRO A . n
A 1 47 VAL 47 47 47 VAL VAL A . n
A 1 48 VAL 48 48 48 VAL VAL A . n
A 1 49 LEU 49 49 49 LEU LEU A . n
A 1 50 LEU 50 50 50 LEU LEU A . n
A 1 51 SER 51 51 51 SER SER A . n
A 1 52 ILE 52 52 52 ILE ILE A . n
A 1 53 THR 53 53 53 THR THR A . n
A 1 54 GLN 54 54 54 GLN GLN A . n
A 1 55 LEU 55 55 55 LEU LEU A . n
A 1 56 ASP 56 56 56 ASP ASP A . n
A 1 57 VAL 57 57 57 VAL VAL A . n
A 1 58 GLU 58 58 58 GLU GLU A . n
A 1 59 GLN 59 59 59 GLN GLN A . n
A 1 60 SER 60 60 60 SER SER A . n
A 1 61 GLN 61 61 61 GLN GLN A . n
A 1 62 ASN 62 62 62 ASN ASN A . n
A 1 63 LEU 63 63 63 LEU LEU A . n
A 1 64 ARG 64 64 64 ARG ARG A . n
A 1 65 VAL 65 65 65 VAL VAL A . n
A 1 66 ILE 66 66 66 ILE ILE A . n
A 1 67 ALA 67 67 67 ALA ALA A . n
A 1 68 ARG 68 68 68 ARG ARG A . n
A 1 69 LEU 69 69 69 LEU LEU A . n
A 1 70 TYR 70 70 70 TYR TYR A . n
A 1 71 SER 71 71 71 SER SER A . n
A 1 72 VAL 72 72 72 VAL VAL A . n
A 1 73 SER 73 73 73 SER SER A . n
A 1 74 PRO 74 74 74 PRO PRO A . n
A 1 75 THR 75 75 75 THR THR A . n
A 1 76 GLY 76 76 76 GLY GLY A . n
A 1 77 PHE 77 77 77 PHE PHE A . n
A 1 78 LYS 78 78 78 LYS LYS A . n
A 1 79 ALA 79 79 79 ALA ALA A . n
A 1 80 SER 80 80 80 SER SER A . n
A 1 81 CYS 81 81 81 CYS CYS A . n
A 1 82 TYR 82 82 82 TYR TYR A . n
A 1 83 THR 83 83 83 THR THR A . n
A 1 84 TRP 84 84 84 TRP TRP A . n
A 1 85 HIS 85 85 85 HIS HIS A . n
A 1 86 ASN 86 86 86 ASN ASN A . n
A 1 87 THR 87 87 87 THR THR A . n
A 1 88 LYS 88 88 88 LYS LYS A . n
A 1 89 VAL 89 89 89 VAL VAL A . n
A 1 90 TYR 90 90 90 TYR TYR A . n
A 1 91 SER 91 91 91 SER SER A . n
A 1 92 MET 92 92 92 MET MET A . n
A 1 93 SER 93 93 93 SER SER A . n
A 1 94 ILE 94 94 94 ILE ILE A . n
A 1 95 SER 95 95 95 SER SER A . n
A 1 96 TRP 96 96 96 TRP TRP A . n
A 1 97 ILE 97 97 97 ILE ILE A . n
A 1 98 SER 98 98 98 SER SER A . n
A 1 99 ILE 99 99 99 ILE ILE A . n
A 1 100 GLU 100 100 100 GLU GLU A . n
A 1 101 ASN 101 101 101 ASN ASN A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 S NAG 201 n
B 2 FUC 2 B FUC 2 S FUC 204 n
B 2 GAL 3 B GAL 3 S GAL 205 n
B 2 FUC 4 B FUC 4 S FUC 206 n
B 2 NAG 5 B NAG 5 S NAG 202 n
B 2 BMA 6 B BMA 6 S BMA 203 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT 1 201 1 ACT ACT A .
D 4 A2G 1 202 1 A2G A2G A .
E 5 NA 1 203 1 NA NA A .
F 6 ZN 1 210 1 ZN ZN A .
G 7 HOH 1 301 1 HOH HOH A .
G 7 HOH 2 302 2 HOH HOH A .
G 7 HOH 3 303 3 HOH HOH A .
G 7 HOH 4 304 4 HOH HOH A .
G 7 HOH 5 305 5 HOH HOH A .
G 7 HOH 6 306 6 HOH HOH A .
G 7 HOH 7 307 7 HOH HOH A .
G 7 HOH 8 308 8 HOH HOH A .
G 7 HOH 9 309 9 HOH HOH A .
G 7 HOH 10 310 10 HOH HOH A .
G 7 HOH 11 311 11 HOH HOH A .
G 7 HOH 12 312 12 HOH HOH A .
G 7 HOH 13 313 13 HOH HOH A .
G 7 HOH 14 314 14 HOH HOH A .
G 7 HOH 15 315 15 HOH HOH A .
G 7 HOH 16 316 16 HOH HOH A .
G 7 HOH 17 317 17 HOH HOH A .
G 7 HOH 18 318 18 HOH HOH A .
G 7 HOH 19 319 19 HOH HOH A .
G 7 HOH 20 320 20 HOH HOH A .
G 7 HOH 21 321 21 HOH HOH A .
G 7 HOH 22 322 22 HOH HOH A .
G 7 HOH 23 323 23 HOH HOH A .
G 7 HOH 24 324 24 HOH HOH A .
G 7 HOH 25 325 25 HOH HOH A .
G 7 HOH 26 326 26 HOH HOH A .
G 7 HOH 27 327 27 HOH HOH A .
G 7 HOH 28 328 28 HOH HOH A .
G 7 HOH 29 329 29 HOH HOH A .
G 7 HOH 30 330 30 HOH HOH A .
G 7 HOH 31 331 31 HOH HOH A .
G 7 HOH 32 332 32 HOH HOH A .
G 7 HOH 33 333 33 HOH HOH A .
G 7 HOH 34 334 34 HOH HOH A .
G 7 HOH 35 335 35 HOH HOH A .
G 7 HOH 36 336 36 HOH HOH A .
G 7 HOH 37 337 37 HOH HOH A .
G 7 HOH 38 338 38 HOH HOH A .
G 7 HOH 39 339 39 HOH HOH A .
G 7 HOH 40 340 40 HOH HOH A .
G 7 HOH 41 341 41 HOH HOH A .
G 7 HOH 42 342 42 HOH HOH A .
G 7 HOH 43 343 43 HOH HOH A .
G 7 HOH 44 344 44 HOH HOH A .
G 7 HOH 45 345 45 HOH HOH A .
G 7 HOH 46 346 46 HOH HOH A .
G 7 HOH 47 347 47 HOH HOH A .
G 7 HOH 48 348 48 HOH HOH A .
G 7 HOH 49 349 49 HOH HOH A .
G 7 HOH 50 350 50 HOH HOH A .
G 7 HOH 51 351 51 HOH HOH A .
G 7 HOH 52 352 52 HOH HOH A .
G 7 HOH 53 353 53 HOH HOH A .
G 7 HOH 54 354 54 HOH HOH A .
G 7 HOH 55 355 55 HOH HOH A .
G 7 HOH 56 356 56 HOH HOH A .
G 7 HOH 57 357 57 HOH HOH A .
G 7 HOH 58 358 58 HOH HOH A .
G 7 HOH 59 359 59 HOH HOH A .
G 7 HOH 60 360 60 HOH HOH A .
G 7 HOH 61 361 61 HOH HOH A .
G 7 HOH 62 362 62 HOH HOH A .
G 7 HOH 63 363 63 HOH HOH A .
G 7 HOH 64 364 64 HOH HOH A .
G 7 HOH 65 365 65 HOH HOH A .
G 7 HOH 66 366 66 HOH HOH A .
G 7 HOH 67 367 67 HOH HOH A .
G 7 HOH 68 368 68 HOH HOH A .
G 7 HOH 69 369 69 HOH HOH A .
G 7 HOH 70 370 70 HOH HOH A .
G 7 HOH 71 371 71 HOH HOH A .
G 7 HOH 72 372 72 HOH HOH A .
G 7 HOH 73 373 73 HOH HOH A .
G 7 HOH 74 374 74 HOH HOH A .
G 7 HOH 75 375 75 HOH HOH A .
G 7 HOH 76 376 76 HOH HOH A .
G 7 HOH 77 377 77 HOH HOH A .
G 7 HOH 78 378 78 HOH HOH A .
G 7 HOH 79 379 79 HOH HOH A .
G 7 HOH 80 380 80 HOH HOH A .
G 7 HOH 81 381 81 HOH HOH A .
G 7 HOH 82 382 82 HOH HOH A .
G 7 HOH 83 383 83 HOH HOH A .
G 7 HOH 84 384 84 HOH HOH A .
G 7 HOH 85 385 85 HOH HOH A .
G 7 HOH 86 386 86 HOH HOH A .
G 7 HOH 87 387 87 HOH HOH A .
G 7 HOH 88 388 88 HOH HOH A .
G 7 HOH 89 389 89 HOH HOH A .
G 7 HOH 90 390 90 HOH HOH A .
G 7 HOH 91 391 91 HOH HOH A .
G 7 HOH 92 392 92 HOH HOH A .
G 7 HOH 93 393 93 HOH HOH A .
G 7 HOH 94 394 94 HOH HOH A .
G 7 HOH 95 395 95 HOH HOH A .
G 7 HOH 96 396 96 HOH HOH A .
G 7 HOH 97 397 97 HOH HOH A .
G 7 HOH 98 398 98 HOH HOH A .
G 7 HOH 99 399 99 HOH HOH A .
G 7 HOH 100 400 100 HOH HOH A .
G 7 HOH 101 401 101 HOH HOH A .
G 7 HOH 102 402 102 HOH HOH A .
G 7 HOH 103 403 103 HOH HOH A .
G 7 HOH 104 404 104 HOH HOH A .
G 7 HOH 105 405 105 HOH HOH A .
G 7 HOH 106 406 106 HOH HOH A .
G 7 HOH 107 407 107 HOH HOH A .
G 7 HOH 108 408 108 HOH HOH A .
G 7 HOH 109 409 109 HOH HOH A .
G 7 HOH 110 410 110 HOH HOH A .
G 7 HOH 111 411 111 HOH HOH A .
G 7 HOH 112 412 112 HOH HOH A .
G 7 HOH 113 413 113 HOH HOH A .
G 7 HOH 114 414 114 HOH HOH A .
G 7 HOH 115 415 115 HOH HOH A .
G 7 HOH 116 416 116 HOH HOH A .
G 7 HOH 117 417 117 HOH HOH A .
G 7 HOH 118 418 118 HOH HOH A .
G 7 HOH 119 419 119 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
XDS 'data reduction' . ? 1
XDS 'data scaling' . ? 2
PHASER phasing . ? 3
REFMAC refinement 5.7.0032 ? 4
#
_cell.entry_id 4Q56
_cell.length_a 47.900
_cell.length_b 47.900
_cell.length_c 281.530
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 18
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4Q56
_symmetry.space_group_name_H-M 'H 3 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 155
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4Q56
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.74
_exptl_crystal.density_percent_sol 55.10
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
'0.05 M Zn(CH3COO)2, 0.1 M HEPES, pH 7.0, 40% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 293K'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector PIXEL
_diffrn_detector.type 'DECTRIS PILATUS 6M'
_diffrn_detector.pdbx_collection_date 2013-07-30
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Double-crystal Si111'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.967
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)'
_diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY'
_diffrn_source.pdbx_synchrotron_beamline 'P13 (MX1)'
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.967
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 4Q56
_reflns.observed_criterion_sigma_I -3.0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 46.92
_reflns.d_resolution_high 1.38
_reflns.number_obs 25294
_reflns.number_all 25294
_reflns.percent_possible_obs 100
_reflns.pdbx_Rmerge_I_obs 0.034
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 29.35
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 10.54
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 1.38
_reflns_shell.d_res_low 1.48
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.0114
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.54
_reflns_shell.pdbx_redundancy 10.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 4Q56
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 25294
_refine.ls_number_reflns_all 25294
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 46.92
_refine.ls_d_res_high 1.38
_refine.ls_percent_reflns_obs 99.95
_refine.ls_R_factor_obs 0.13788
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.13658
_refine.ls_R_factor_R_free 0.16782
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.1
_refine.ls_number_reflns_R_free 1083
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.979
_refine.correlation_coeff_Fo_to_Fc_free 0.978
_refine.B_iso_mean 31.068
_refine.aniso_B[1][1] 0.59
_refine.aniso_B[2][2] 0.59
_refine.aniso_B[3][3] -1.93
_refine.aniso_B[1][2] 0.59
_refine.aniso_B[1][3] -0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 'PDB entry 2CCV'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.049
_refine.pdbx_overall_ESU_R_Free 0.048
_refine.overall_SU_ML 0.035
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 1.970
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 796
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 91
_refine_hist.number_atoms_solvent 119
_refine_hist.number_atoms_total 1006
_refine_hist.d_res_high 1.38
_refine_hist.d_res_low 46.92
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.017 0.020 ? 948 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.002 0.020 ? 874 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.013 2.068 ? 1309 'X-RAY DIFFRACTION' ?
r_angle_other_deg 0.876 3.002 ? 2013 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 6.557 5.000 ? 112 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 27.939 24.054 ? 37 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 12.463 15.000 ? 147 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 22.175 15.000 ? 6 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.121 0.200 ? 167 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.010 0.021 ? 994 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.001 0.020 ? 197 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 2.936 2.785 ? 416 'X-RAY DIFFRACTION' ?
r_mcbond_other 2.897 2.769 ? 414 'X-RAY DIFFRACTION' ?
r_mcangle_it 3.610 4.161 ? 520 'X-RAY DIFFRACTION' ?
r_mcangle_other 4.145 4.331 ? 513 'X-RAY DIFFRACTION' ?
r_scbond_it 4.431 3.169 ? 529 'X-RAY DIFFRACTION' ?
r_scbond_other 4.835 3.195 ? 511 'X-RAY DIFFRACTION' ?
r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_other 5.397 4.744 ? 758 'X-RAY DIFFRACTION' ?
r_long_range_B_refined 6.834 25.375 ? 1045 'X-RAY DIFFRACTION' ?
r_long_range_B_other 5.301 24.168 ? 989 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr 5.082 3.000 ? 1818 'X-RAY DIFFRACTION' ?
r_sphericity_free 29.808 5.000 ? 49 'X-RAY DIFFRACTION' ?
r_sphericity_bonded 14.734 5.000 ? 1862 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.380
_refine_ls_shell.d_res_low 1.416
_refine_ls_shell.number_reflns_R_work 1843
_refine_ls_shell.R_factor_R_work 0.299
_refine_ls_shell.percent_reflns_obs 99.95
_refine_ls_shell.R_factor_R_free 0.367
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 73
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_database_PDB_matrix.entry_id 4Q56
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4Q56
_struct.title
'Structure of Helix aspersa agglutinin with natural glycosylation and N-acetyl-alpha-D-galactosamine (GalNAc)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4Q56
_struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN'
_struct_keywords.text 'CARBOHYDRATE-BINDING PROTEIN, SUGAR BINDING PROTEIN, H-TYPE LECTIN, SNAIL MUCUS'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
F N N 6 ?
G N N 7 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4Q56
_struct_ref.pdbx_db_accession 4Q56
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4Q56
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 101
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4Q56
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 101
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 101
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details hexameric
_pdbx_struct_assembly.oligomeric_count 6
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 15320 ?
1 MORE -51 ?
1 'SSA (A^2)' 33850 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 47.9000000000 0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 23.9500000000 -0.8660254038
-0.5000000000 0.0000000000 41.4826168413 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5000000000 0.8660254038 0.0000000000 23.9500000000 0.8660254038
0.5000000000 0.0000000000 -13.8275389471 0.0000000000 0.0000000000 -1.0000000000 187.6866666667
5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
-1.0000000000 0.0000000000 27.6550778942 0.0000000000 0.0000000000 -1.0000000000 187.6866666667
6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 47.9000000000 -0.8660254038
0.5000000000 0.0000000000 27.6550778942 0.0000000000 0.0000000000 -1.0000000000 187.6866666667
#
_struct_biol.id 1
_struct_biol.details ?
#
_struct_conf.conf_type_id HELX_P
_struct_conf.id HELX_P1
_struct_conf.pdbx_PDB_helix_id 1
_struct_conf.beg_label_comp_id ASN
_struct_conf.beg_label_asym_id A
_struct_conf.beg_label_seq_id 12
_struct_conf.pdbx_beg_PDB_ins_code ?
_struct_conf.end_label_comp_id TRP
_struct_conf.end_label_asym_id A
_struct_conf.end_label_seq_id 16
_struct_conf.pdbx_end_PDB_ins_code ?
_struct_conf.beg_auth_comp_id ASN
_struct_conf.beg_auth_asym_id A
_struct_conf.beg_auth_seq_id 12
_struct_conf.end_auth_comp_id TRP
_struct_conf.end_auth_asym_id A
_struct_conf.end_auth_seq_id 16
_struct_conf.pdbx_PDB_helix_class 5
_struct_conf.details ?
_struct_conf.pdbx_PDB_helix_length 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 10 A CYS 81 1_555 ? ? ? ? ? ? ? 2.037 ? ?
disulf2 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 43 A CYS 43 5_556 ? ? ? ? ? ? ? 2.034 ? ?
covale1 covale both ? A PCA 1 C ? ? ? 1_555 A ARG 2 N ? ? A PCA 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale2 covale one ? A ASN 35 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 35 B NAG 1 1_555 ? ? ? ? ? ? ? 1.469 ? N-Glycosylation
covale3 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 2 1_555 ? ? ? ? ? ? ? 1.440 ? ?
covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 5 1_555 ? ? ? ? ? ? ? 1.435 ? ?
covale5 covale both ? B FUC . O4 ? ? ? 1_555 B GAL . C1 ? ? B FUC 2 B GAL 3 1_555 ? ? ? ? ? ? ? 1.420 ? ?
covale6 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 3 B FUC 4 1_555 ? ? ? ? ? ? ? 1.444 ? ?
covale7 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 5 B BMA 6 1_555 ? ? ? ? ? ? ? 1.433 ? ?
metalc1 metalc ? ? A GLN 59 O ? ? ? 1_555 E NA . NA ? ? A GLN 59 A NA 203 1_555 ? ? ? ? ? ? ? 2.478 ? ?
metalc2 metalc ? ? A GLN 59 OE1 ? ? ? 1_555 E NA . NA ? ? A GLN 59 A NA 203 1_555 ? ? ? ? ? ? ? 2.526 ? ?
metalc3 metalc ? ? A HIS 85 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 85 A ZN 210 1_555 ? ? ? ? ? ? ? 2.049 ? ?
metalc4 metalc ? ? C ACT . O ? ? ? 1_555 F ZN . ZN ? ? A ACT 201 A ZN 210 1_555 ? ? ? ? ? ? ? 1.939 ? ?
metalc5 metalc ? ? C ACT . OXT ? ? ? 1_555 F ZN . ZN ? ? A ACT 201 A ZN 210 1_555 ? ? ? ? ? ? ? 2.523 ? ?
metalc6 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 203 A HOH 337 1_555 ? ? ? ? ? ? ? 2.473 ? ?
metalc7 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 203 A HOH 396 1_555 ? ? ? ? ? ? ? 2.724 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
metalc ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 OE1 ? A GLN 59 ? A GLN 59 ? 1_555 70.1 ?
2 O ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 337 ? 1_555 79.9 ?
3 OE1 ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 337 ? 1_555 125.1 ?
4 O ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 396 ? 1_555 100.1 ?
5 OE1 ? A GLN 59 ? A GLN 59 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 396 ? 1_555 54.9 ?
6 O ? G HOH . ? A HOH 337 ? 1_555 NA ? E NA . ? A NA 203 ? 1_555 O ? G HOH . ? A HOH 396 ? 1_555 180.0 ?
7 NE2 ? A HIS 85 ? A HIS 85 ? 1_555 ZN ? F ZN . ? A ZN 210 ? 1_555 O ? C ACT . ? A ACT 201 ? 1_555 111.7 ?
8 NE2 ? A HIS 85 ? A HIS 85 ? 1_555 ZN ? F ZN . ? A ZN 210 ? 1_555 OXT ? C ACT . ? A ACT 201 ? 1_555 91.4 ?
9 O ? C ACT . ? A ACT 201 ? 1_555 ZN ? F ZN . ? A ZN 210 ? 1_555 OXT ? C ACT . ? A ACT 201 ? 1_555 55.4 ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 PCA A 1 ? . . . . PCA A 1 ? 1_555 . . . . . . . GLN 1 PCA 'Pyrrolidone carboxylic acid'
'Named protein modification'
2 NAG B . ? ASN A 35 ? NAG B 1 ? 1_555 ASN A 35 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 CYS A 10 ? CYS A 81 ? CYS A 10 ? 1_555 CYS A 81 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 43 ? CYS A 43 ? CYS A 43 ? 1_555 CYS A 43 ? 5_556 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 3 ?
B ? 4 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 VAL A 3 ? ASP A 9 ? VAL A 3 ASP A 9
A 2 VAL A 89 ? ILE A 99 ? VAL A 89 ILE A 99
A 3 VAL A 47 ? VAL A 57 ? VAL A 47 VAL A 57
B 1 ALA A 17 ? LYS A 18 ? ALA A 17 LYS A 18
B 2 ARG A 30 ? THR A 37 ? ARG A 30 THR A 37
B 3 GLY A 76 ? THR A 83 ? GLY A 76 THR A 83
B 4 ILE A 66 ? VAL A 72 ? ILE A 66 VAL A 72
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ILE A 8 ? N ILE A 8 O ILE A 94 ? O ILE A 94
A 2 3 O TYR A 90 ? O TYR A 90 N ASP A 56 ? N ASP A 56
B 1 2 N ALA A 17 ? N ALA A 17 O GLU A 31 ? O GLU A 31
B 2 3 N ILE A 36 ? N ILE A 36 O PHE A 77 ? O PHE A 77
B 3 4 O SER A 80 ? O SER A 80 N ARG A 68 ? N ARG A 68
#
_pdbx_entry_details.entry_id 4Q56
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 411
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 413
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.19
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id HIS
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 85
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 50.85
_pdbx_validate_torsion.psi -137.80
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 35 A ASN 35 ? ASN 'GLYCOSYLATION SITE'
2 A PCA 1 A PCA 1 ? GLN 'PYROGLUTAMIC ACID'
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A NA 203 ? E NA .
2 1 A ZN 210 ? F ZN .
3 1 A HOH 337 ? G HOH .
4 1 A HOH 396 ? G HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A2G O5 O N N 1
A2G C1 C N S 2
A2G O1 O N N 3
A2G C2 C N R 4
A2G N2 N N N 5
A2G C3 C N R 6
A2G O3 O N N 7
A2G C4 C N R 8
A2G O4 O N N 9
A2G C5 C N R 10
A2G C6 C N N 11
A2G O6 O N N 12
A2G C7 C N N 13
A2G O7 O N N 14
A2G C8 C N N 15
A2G H1 H N N 16
A2G HO1 H N N 17
A2G H2 H N N 18
A2G HN2 H N N 19
A2G H3 H N N 20
A2G HO3 H N N 21
A2G H4 H N N 22
A2G HO4 H N N 23
A2G H5 H N N 24
A2G H61 H N N 25
A2G H81 H N N 26
A2G H82 H N N 27
A2G H83 H N N 28
A2G H62 H N N 29
A2G HO6 H N N 30
ACT C C N N 31
ACT O O N N 32
ACT OXT O N N 33
ACT CH3 C N N 34
ACT H1 H N N 35
ACT H2 H N N 36
ACT H3 H N N 37
ALA N N N N 38
ALA CA C N S 39
ALA C C N N 40
ALA O O N N 41
ALA CB C N N 42
ALA OXT O N N 43
ALA H H N N 44
ALA H2 H N N 45
ALA HA H N N 46
ALA HB1 H N N 47
ALA HB2 H N N 48
ALA HB3 H N N 49
ALA HXT H N N 50
ARG N N N N 51
ARG CA C N S 52
ARG C C N N 53
ARG O O N N 54
ARG CB C N N 55
ARG CG C N N 56
ARG CD C N N 57
ARG NE N N N 58
ARG CZ C N N 59
ARG NH1 N N N 60
ARG NH2 N N N 61
ARG OXT O N N 62
ARG H H N N 63
ARG H2 H N N 64
ARG HA H N N 65
ARG HB2 H N N 66
ARG HB3 H N N 67
ARG HG2 H N N 68
ARG HG3 H N N 69
ARG HD2 H N N 70
ARG HD3 H N N 71
ARG HE H N N 72
ARG HH11 H N N 73
ARG HH12 H N N 74
ARG HH21 H N N 75
ARG HH22 H N N 76
ARG HXT H N N 77
ASN N N N N 78
ASN CA C N S 79
ASN C C N N 80
ASN O O N N 81
ASN CB C N N 82
ASN CG C N N 83
ASN OD1 O N N 84
ASN ND2 N N N 85
ASN OXT O N N 86
ASN H H N N 87
ASN H2 H N N 88
ASN HA H N N 89
ASN HB2 H N N 90
ASN HB3 H N N 91
ASN HD21 H N N 92
ASN HD22 H N N 93
ASN HXT H N N 94
ASP N N N N 95
ASP CA C N S 96
ASP C C N N 97
ASP O O N N 98
ASP CB C N N 99
ASP CG C N N 100
ASP OD1 O N N 101
ASP OD2 O N N 102
ASP OXT O N N 103
ASP H H N N 104
ASP H2 H N N 105
ASP HA H N N 106
ASP HB2 H N N 107
ASP HB3 H N N 108
ASP HD2 H N N 109
ASP HXT H N N 110
BMA C1 C N R 111
BMA C2 C N S 112
BMA C3 C N S 113
BMA C4 C N S 114
BMA C5 C N R 115
BMA C6 C N N 116
BMA O1 O N N 117
BMA O2 O N N 118
BMA O3 O N N 119
BMA O4 O N N 120
BMA O5 O N N 121
BMA O6 O N N 122
BMA H1 H N N 123
BMA H2 H N N 124
BMA H3 H N N 125
BMA H4 H N N 126
BMA H5 H N N 127
BMA H61 H N N 128
BMA H62 H N N 129
BMA HO1 H N N 130
BMA HO2 H N N 131
BMA HO3 H N N 132
BMA HO4 H N N 133
BMA HO6 H N N 134
CYS N N N N 135
CYS CA C N R 136
CYS C C N N 137
CYS O O N N 138
CYS CB C N N 139
CYS SG S N N 140
CYS OXT O N N 141
CYS H H N N 142
CYS H2 H N N 143
CYS HA H N N 144
CYS HB2 H N N 145
CYS HB3 H N N 146
CYS HG H N N 147
CYS HXT H N N 148
FUC C1 C N R 149
FUC C2 C N S 150
FUC C3 C N R 151
FUC C4 C N S 152
FUC C5 C N S 153
FUC C6 C N N 154
FUC O1 O N N 155
FUC O2 O N N 156
FUC O3 O N N 157
FUC O4 O N N 158
FUC O5 O N N 159
FUC H1 H N N 160
FUC H2 H N N 161
FUC H3 H N N 162
FUC H4 H N N 163
FUC H5 H N N 164
FUC H61 H N N 165
FUC H62 H N N 166
FUC H63 H N N 167
FUC HO1 H N N 168
FUC HO2 H N N 169
FUC HO3 H N N 170
FUC HO4 H N N 171
GAL C1 C N R 172
GAL C2 C N R 173
GAL C3 C N S 174
GAL C4 C N R 175
GAL C5 C N R 176
GAL C6 C N N 177
GAL O1 O N N 178
GAL O2 O N N 179
GAL O3 O N N 180
GAL O4 O N N 181
GAL O5 O N N 182
GAL O6 O N N 183
GAL H1 H N N 184
GAL H2 H N N 185
GAL H3 H N N 186
GAL H4 H N N 187
GAL H5 H N N 188
GAL H61 H N N 189
GAL H62 H N N 190
GAL HO1 H N N 191
GAL HO2 H N N 192
GAL HO3 H N N 193
GAL HO4 H N N 194
GAL HO6 H N N 195
GLN N N N N 196
GLN CA C N S 197
GLN C C N N 198
GLN O O N N 199
GLN CB C N N 200
GLN CG C N N 201
GLN CD C N N 202
GLN OE1 O N N 203
GLN NE2 N N N 204
GLN OXT O N N 205
GLN H H N N 206
GLN H2 H N N 207
GLN HA H N N 208
GLN HB2 H N N 209
GLN HB3 H N N 210
GLN HG2 H N N 211
GLN HG3 H N N 212
GLN HE21 H N N 213
GLN HE22 H N N 214
GLN HXT H N N 215
GLU N N N N 216
GLU CA C N S 217
GLU C C N N 218
GLU O O N N 219
GLU CB C N N 220
GLU CG C N N 221
GLU CD C N N 222
GLU OE1 O N N 223
GLU OE2 O N N 224
GLU OXT O N N 225
GLU H H N N 226
GLU H2 H N N 227
GLU HA H N N 228
GLU HB2 H N N 229
GLU HB3 H N N 230
GLU HG2 H N N 231
GLU HG3 H N N 232
GLU HE2 H N N 233
GLU HXT H N N 234
GLY N N N N 235
GLY CA C N N 236
GLY C C N N 237
GLY O O N N 238
GLY OXT O N N 239
GLY H H N N 240
GLY H2 H N N 241
GLY HA2 H N N 242
GLY HA3 H N N 243
GLY HXT H N N 244
HIS N N N N 245
HIS CA C N S 246
HIS C C N N 247
HIS O O N N 248
HIS CB C N N 249
HIS CG C Y N 250
HIS ND1 N Y N 251
HIS CD2 C Y N 252
HIS CE1 C Y N 253
HIS NE2 N Y N 254
HIS OXT O N N 255
HIS H H N N 256
HIS H2 H N N 257
HIS HA H N N 258
HIS HB2 H N N 259
HIS HB3 H N N 260
HIS HD1 H N N 261
HIS HD2 H N N 262
HIS HE1 H N N 263
HIS HE2 H N N 264
HIS HXT H N N 265
HOH O O N N 266
HOH H1 H N N 267
HOH H2 H N N 268
ILE N N N N 269
ILE CA C N S 270
ILE C C N N 271
ILE O O N N 272
ILE CB C N S 273
ILE CG1 C N N 274
ILE CG2 C N N 275
ILE CD1 C N N 276
ILE OXT O N N 277
ILE H H N N 278
ILE H2 H N N 279
ILE HA H N N 280
ILE HB H N N 281
ILE HG12 H N N 282
ILE HG13 H N N 283
ILE HG21 H N N 284
ILE HG22 H N N 285
ILE HG23 H N N 286
ILE HD11 H N N 287
ILE HD12 H N N 288
ILE HD13 H N N 289
ILE HXT H N N 290
LEU N N N N 291
LEU CA C N S 292
LEU C C N N 293
LEU O O N N 294
LEU CB C N N 295
LEU CG C N N 296
LEU CD1 C N N 297
LEU CD2 C N N 298
LEU OXT O N N 299
LEU H H N N 300
LEU H2 H N N 301
LEU HA H N N 302
LEU HB2 H N N 303
LEU HB3 H N N 304
LEU HG H N N 305
LEU HD11 H N N 306
LEU HD12 H N N 307
LEU HD13 H N N 308
LEU HD21 H N N 309
LEU HD22 H N N 310
LEU HD23 H N N 311
LEU HXT H N N 312
LYS N N N N 313
LYS CA C N S 314
LYS C C N N 315
LYS O O N N 316
LYS CB C N N 317
LYS CG C N N 318
LYS CD C N N 319
LYS CE C N N 320
LYS NZ N N N 321
LYS OXT O N N 322
LYS H H N N 323
LYS H2 H N N 324
LYS HA H N N 325
LYS HB2 H N N 326
LYS HB3 H N N 327
LYS HG2 H N N 328
LYS HG3 H N N 329
LYS HD2 H N N 330
LYS HD3 H N N 331
LYS HE2 H N N 332
LYS HE3 H N N 333
LYS HZ1 H N N 334
LYS HZ2 H N N 335
LYS HZ3 H N N 336
LYS HXT H N N 337
MET N N N N 338
MET CA C N S 339
MET C C N N 340
MET O O N N 341
MET CB C N N 342
MET CG C N N 343
MET SD S N N 344
MET CE C N N 345
MET OXT O N N 346
MET H H N N 347
MET H2 H N N 348
MET HA H N N 349
MET HB2 H N N 350
MET HB3 H N N 351
MET HG2 H N N 352
MET HG3 H N N 353
MET HE1 H N N 354
MET HE2 H N N 355
MET HE3 H N N 356
MET HXT H N N 357
NA NA NA N N 358
NAG C1 C N R 359
NAG C2 C N R 360
NAG C3 C N R 361
NAG C4 C N S 362
NAG C5 C N R 363
NAG C6 C N N 364
NAG C7 C N N 365
NAG C8 C N N 366
NAG N2 N N N 367
NAG O1 O N N 368
NAG O3 O N N 369
NAG O4 O N N 370
NAG O5 O N N 371
NAG O6 O N N 372
NAG O7 O N N 373
NAG H1 H N N 374
NAG H2 H N N 375
NAG H3 H N N 376
NAG H4 H N N 377
NAG H5 H N N 378
NAG H61 H N N 379
NAG H62 H N N 380
NAG H81 H N N 381
NAG H82 H N N 382
NAG H83 H N N 383
NAG HN2 H N N 384
NAG HO1 H N N 385
NAG HO3 H N N 386
NAG HO4 H N N 387
NAG HO6 H N N 388
PCA N N N N 389
PCA CA C N S 390
PCA CB C N N 391
PCA CG C N N 392
PCA CD C N N 393
PCA OE O N N 394
PCA C C N N 395
PCA O O N N 396
PCA OXT O N N 397
PCA H H N N 398
PCA HA H N N 399
PCA HB2 H N N 400
PCA HB3 H N N 401
PCA HG2 H N N 402
PCA HG3 H N N 403
PCA HXT H N N 404
PHE N N N N 405
PHE CA C N S 406
PHE C C N N 407
PHE O O N N 408
PHE CB C N N 409
PHE CG C Y N 410
PHE CD1 C Y N 411
PHE CD2 C Y N 412
PHE CE1 C Y N 413
PHE CE2 C Y N 414
PHE CZ C Y N 415
PHE OXT O N N 416
PHE H H N N 417
PHE H2 H N N 418
PHE HA H N N 419
PHE HB2 H N N 420
PHE HB3 H N N 421
PHE HD1 H N N 422
PHE HD2 H N N 423
PHE HE1 H N N 424
PHE HE2 H N N 425
PHE HZ H N N 426
PHE HXT H N N 427
PRO N N N N 428
PRO CA C N S 429
PRO C C N N 430
PRO O O N N 431
PRO CB C N N 432
PRO CG C N N 433
PRO CD C N N 434
PRO OXT O N N 435
PRO H H N N 436
PRO HA H N N 437
PRO HB2 H N N 438
PRO HB3 H N N 439
PRO HG2 H N N 440
PRO HG3 H N N 441
PRO HD2 H N N 442
PRO HD3 H N N 443
PRO HXT H N N 444
SER N N N N 445
SER CA C N S 446
SER C C N N 447
SER O O N N 448
SER CB C N N 449
SER OG O N N 450
SER OXT O N N 451
SER H H N N 452
SER H2 H N N 453
SER HA H N N 454
SER HB2 H N N 455
SER HB3 H N N 456
SER HG H N N 457
SER HXT H N N 458
THR N N N N 459
THR CA C N S 460
THR C C N N 461
THR O O N N 462
THR CB C N R 463
THR OG1 O N N 464
THR CG2 C N N 465
THR OXT O N N 466
THR H H N N 467
THR H2 H N N 468
THR HA H N N 469
THR HB H N N 470
THR HG1 H N N 471
THR HG21 H N N 472
THR HG22 H N N 473
THR HG23 H N N 474
THR HXT H N N 475
TRP N N N N 476
TRP CA C N S 477
TRP C C N N 478
TRP O O N N 479
TRP CB C N N 480
TRP CG C Y N 481
TRP CD1 C Y N 482
TRP CD2 C Y N 483
TRP NE1 N Y N 484
TRP CE2 C Y N 485
TRP CE3 C Y N 486
TRP CZ2 C Y N 487
TRP CZ3 C Y N 488
TRP CH2 C Y N 489
TRP OXT O N N 490
TRP H H N N 491
TRP H2 H N N 492
TRP HA H N N 493
TRP HB2 H N N 494
TRP HB3 H N N 495
TRP HD1 H N N 496
TRP HE1 H N N 497
TRP HE3 H N N 498
TRP HZ2 H N N 499
TRP HZ3 H N N 500
TRP HH2 H N N 501
TRP HXT H N N 502
TYR N N N N 503
TYR CA C N S 504
TYR C C N N 505
TYR O O N N 506
TYR CB C N N 507
TYR CG C Y N 508
TYR CD1 C Y N 509
TYR CD2 C Y N 510
TYR CE1 C Y N 511
TYR CE2 C Y N 512
TYR CZ C Y N 513
TYR OH O N N 514
TYR OXT O N N 515
TYR H H N N 516
TYR H2 H N N 517
TYR HA H N N 518
TYR HB2 H N N 519
TYR HB3 H N N 520
TYR HD1 H N N 521
TYR HD2 H N N 522
TYR HE1 H N N 523
TYR HE2 H N N 524
TYR HH H N N 525
TYR HXT H N N 526
VAL N N N N 527
VAL CA C N S 528
VAL C C N N 529
VAL O O N N 530
VAL CB C N N 531
VAL CG1 C N N 532
VAL CG2 C N N 533
VAL OXT O N N 534
VAL H H N N 535
VAL H2 H N N 536
VAL HA H N N 537
VAL HB H N N 538
VAL HG11 H N N 539
VAL HG12 H N N 540
VAL HG13 H N N 541
VAL HG21 H N N 542
VAL HG22 H N N 543
VAL HG23 H N N 544
VAL HXT H N N 545
ZN ZN ZN N N 546
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A2G O5 C5 sing N N 1
A2G C1 O5 sing N N 2
A2G C1 C2 sing N N 3
A2G C1 H1 sing N N 4
A2G O1 C1 sing N N 5
A2G O1 HO1 sing N N 6
A2G C2 C3 sing N N 7
A2G C2 H2 sing N N 8
A2G N2 C2 sing N N 9
A2G N2 HN2 sing N N 10
A2G C3 C4 sing N N 11
A2G C3 O3 sing N N 12
A2G C3 H3 sing N N 13
A2G O3 HO3 sing N N 14
A2G C4 O4 sing N N 15
A2G C4 H4 sing N N 16
A2G O4 HO4 sing N N 17
A2G C5 C4 sing N N 18
A2G C5 C6 sing N N 19
A2G C5 H5 sing N N 20
A2G C6 O6 sing N N 21
A2G C6 H61 sing N N 22
A2G C7 N2 sing N N 23
A2G O7 C7 doub N N 24
A2G C8 C7 sing N N 25
A2G C8 H81 sing N N 26
A2G C8 H82 sing N N 27
A2G C8 H83 sing N N 28
A2G C6 H62 sing N N 29
A2G O6 HO6 sing N N 30
ACT C O doub N N 31
ACT C OXT sing N N 32
ACT C CH3 sing N N 33
ACT CH3 H1 sing N N 34
ACT CH3 H2 sing N N 35
ACT CH3 H3 sing N N 36
ALA N CA sing N N 37
ALA N H sing N N 38
ALA N H2 sing N N 39
ALA CA C sing N N 40
ALA CA CB sing N N 41
ALA CA HA sing N N 42
ALA C O doub N N 43
ALA C OXT sing N N 44
ALA CB HB1 sing N N 45
ALA CB HB2 sing N N 46
ALA CB HB3 sing N N 47
ALA OXT HXT sing N N 48
ARG N CA sing N N 49
ARG N H sing N N 50
ARG N H2 sing N N 51
ARG CA C sing N N 52
ARG CA CB sing N N 53
ARG CA HA sing N N 54
ARG C O doub N N 55
ARG C OXT sing N N 56
ARG CB CG sing N N 57
ARG CB HB2 sing N N 58
ARG CB HB3 sing N N 59
ARG CG CD sing N N 60
ARG CG HG2 sing N N 61
ARG CG HG3 sing N N 62
ARG CD NE sing N N 63
ARG CD HD2 sing N N 64
ARG CD HD3 sing N N 65
ARG NE CZ sing N N 66
ARG NE HE sing N N 67
ARG CZ NH1 sing N N 68
ARG CZ NH2 doub N N 69
ARG NH1 HH11 sing N N 70
ARG NH1 HH12 sing N N 71
ARG NH2 HH21 sing N N 72
ARG NH2 HH22 sing N N 73
ARG OXT HXT sing N N 74
ASN N CA sing N N 75
ASN N H sing N N 76
ASN N H2 sing N N 77
ASN CA C sing N N 78
ASN CA CB sing N N 79
ASN CA HA sing N N 80
ASN C O doub N N 81
ASN C OXT sing N N 82
ASN CB CG sing N N 83
ASN CB HB2 sing N N 84
ASN CB HB3 sing N N 85
ASN CG OD1 doub N N 86
ASN CG ND2 sing N N 87
ASN ND2 HD21 sing N N 88
ASN ND2 HD22 sing N N 89
ASN OXT HXT sing N N 90
ASP N CA sing N N 91
ASP N H sing N N 92
ASP N H2 sing N N 93
ASP CA C sing N N 94
ASP CA CB sing N N 95
ASP CA HA sing N N 96
ASP C O doub N N 97
ASP C OXT sing N N 98
ASP CB CG sing N N 99
ASP CB HB2 sing N N 100
ASP CB HB3 sing N N 101
ASP CG OD1 doub N N 102
ASP CG OD2 sing N N 103
ASP OD2 HD2 sing N N 104
ASP OXT HXT sing N N 105
BMA C1 C2 sing N N 106
BMA C1 O1 sing N N 107
BMA C1 O5 sing N N 108
BMA C1 H1 sing N N 109
BMA C2 C3 sing N N 110
BMA C2 O2 sing N N 111
BMA C2 H2 sing N N 112
BMA C3 C4 sing N N 113
BMA C3 O3 sing N N 114
BMA C3 H3 sing N N 115
BMA C4 C5 sing N N 116
BMA C4 O4 sing N N 117
BMA C4 H4 sing N N 118
BMA C5 C6 sing N N 119
BMA C5 O5 sing N N 120
BMA C5 H5 sing N N 121
BMA C6 O6 sing N N 122
BMA C6 H61 sing N N 123
BMA C6 H62 sing N N 124
BMA O1 HO1 sing N N 125
BMA O2 HO2 sing N N 126
BMA O3 HO3 sing N N 127
BMA O4 HO4 sing N N 128
BMA O6 HO6 sing N N 129
CYS N CA sing N N 130
CYS N H sing N N 131
CYS N H2 sing N N 132
CYS CA C sing N N 133
CYS CA CB sing N N 134
CYS CA HA sing N N 135
CYS C O doub N N 136
CYS C OXT sing N N 137
CYS CB SG sing N N 138
CYS CB HB2 sing N N 139
CYS CB HB3 sing N N 140
CYS SG HG sing N N 141
CYS OXT HXT sing N N 142
FUC C1 C2 sing N N 143
FUC C1 O1 sing N N 144
FUC C1 O5 sing N N 145
FUC C1 H1 sing N N 146
FUC C2 C3 sing N N 147
FUC C2 O2 sing N N 148
FUC C2 H2 sing N N 149
FUC C3 C4 sing N N 150
FUC C3 O3 sing N N 151
FUC C3 H3 sing N N 152
FUC C4 C5 sing N N 153
FUC C4 O4 sing N N 154
FUC C4 H4 sing N N 155
FUC C5 C6 sing N N 156
FUC C5 O5 sing N N 157
FUC C5 H5 sing N N 158
FUC C6 H61 sing N N 159
FUC C6 H62 sing N N 160
FUC C6 H63 sing N N 161
FUC O1 HO1 sing N N 162
FUC O2 HO2 sing N N 163
FUC O3 HO3 sing N N 164
FUC O4 HO4 sing N N 165
GAL C1 C2 sing N N 166
GAL C1 O1 sing N N 167
GAL C1 O5 sing N N 168
GAL C1 H1 sing N N 169
GAL C2 C3 sing N N 170
GAL C2 O2 sing N N 171
GAL C2 H2 sing N N 172
GAL C3 C4 sing N N 173
GAL C3 O3 sing N N 174
GAL C3 H3 sing N N 175
GAL C4 C5 sing N N 176
GAL C4 O4 sing N N 177
GAL C4 H4 sing N N 178
GAL C5 C6 sing N N 179
GAL C5 O5 sing N N 180
GAL C5 H5 sing N N 181
GAL C6 O6 sing N N 182
GAL C6 H61 sing N N 183
GAL C6 H62 sing N N 184
GAL O1 HO1 sing N N 185
GAL O2 HO2 sing N N 186
GAL O3 HO3 sing N N 187
GAL O4 HO4 sing N N 188
GAL O6 HO6 sing N N 189
GLN N CA sing N N 190
GLN N H sing N N 191
GLN N H2 sing N N 192
GLN CA C sing N N 193
GLN CA CB sing N N 194
GLN CA HA sing N N 195
GLN C O doub N N 196
GLN C OXT sing N N 197
GLN CB CG sing N N 198
GLN CB HB2 sing N N 199
GLN CB HB3 sing N N 200
GLN CG CD sing N N 201
GLN CG HG2 sing N N 202
GLN CG HG3 sing N N 203
GLN CD OE1 doub N N 204
GLN CD NE2 sing N N 205
GLN NE2 HE21 sing N N 206
GLN NE2 HE22 sing N N 207
GLN OXT HXT sing N N 208
GLU N CA sing N N 209
GLU N H sing N N 210
GLU N H2 sing N N 211
GLU CA C sing N N 212
GLU CA CB sing N N 213
GLU CA HA sing N N 214
GLU C O doub N N 215
GLU C OXT sing N N 216
GLU CB CG sing N N 217
GLU CB HB2 sing N N 218
GLU CB HB3 sing N N 219
GLU CG CD sing N N 220
GLU CG HG2 sing N N 221
GLU CG HG3 sing N N 222
GLU CD OE1 doub N N 223
GLU CD OE2 sing N N 224
GLU OE2 HE2 sing N N 225
GLU OXT HXT sing N N 226
GLY N CA sing N N 227
GLY N H sing N N 228
GLY N H2 sing N N 229
GLY CA C sing N N 230
GLY CA HA2 sing N N 231
GLY CA HA3 sing N N 232
GLY C O doub N N 233
GLY C OXT sing N N 234
GLY OXT HXT sing N N 235
HIS N CA sing N N 236
HIS N H sing N N 237
HIS N H2 sing N N 238
HIS CA C sing N N 239
HIS CA CB sing N N 240
HIS CA HA sing N N 241
HIS C O doub N N 242
HIS C OXT sing N N 243
HIS CB CG sing N N 244
HIS CB HB2 sing N N 245
HIS CB HB3 sing N N 246
HIS CG ND1 sing Y N 247
HIS CG CD2 doub Y N 248
HIS ND1 CE1 doub Y N 249
HIS ND1 HD1 sing N N 250
HIS CD2 NE2 sing Y N 251
HIS CD2 HD2 sing N N 252
HIS CE1 NE2 sing Y N 253
HIS CE1 HE1 sing N N 254
HIS NE2 HE2 sing N N 255
HIS OXT HXT sing N N 256
HOH O H1 sing N N 257
HOH O H2 sing N N 258
ILE N CA sing N N 259
ILE N H sing N N 260
ILE N H2 sing N N 261
ILE CA C sing N N 262
ILE CA CB sing N N 263
ILE CA HA sing N N 264
ILE C O doub N N 265
ILE C OXT sing N N 266
ILE CB CG1 sing N N 267
ILE CB CG2 sing N N 268
ILE CB HB sing N N 269
ILE CG1 CD1 sing N N 270
ILE CG1 HG12 sing N N 271
ILE CG1 HG13 sing N N 272
ILE CG2 HG21 sing N N 273
ILE CG2 HG22 sing N N 274
ILE CG2 HG23 sing N N 275
ILE CD1 HD11 sing N N 276
ILE CD1 HD12 sing N N 277
ILE CD1 HD13 sing N N 278
ILE OXT HXT sing N N 279
LEU N CA sing N N 280
LEU N H sing N N 281
LEU N H2 sing N N 282
LEU CA C sing N N 283
LEU CA CB sing N N 284
LEU CA HA sing N N 285
LEU C O doub N N 286
LEU C OXT sing N N 287
LEU CB CG sing N N 288
LEU CB HB2 sing N N 289
LEU CB HB3 sing N N 290
LEU CG CD1 sing N N 291
LEU CG CD2 sing N N 292
LEU CG HG sing N N 293
LEU CD1 HD11 sing N N 294
LEU CD1 HD12 sing N N 295
LEU CD1 HD13 sing N N 296
LEU CD2 HD21 sing N N 297
LEU CD2 HD22 sing N N 298
LEU CD2 HD23 sing N N 299
LEU OXT HXT sing N N 300
LYS N CA sing N N 301
LYS N H sing N N 302
LYS N H2 sing N N 303
LYS CA C sing N N 304
LYS CA CB sing N N 305
LYS CA HA sing N N 306
LYS C O doub N N 307
LYS C OXT sing N N 308
LYS CB CG sing N N 309
LYS CB HB2 sing N N 310
LYS CB HB3 sing N N 311
LYS CG CD sing N N 312
LYS CG HG2 sing N N 313
LYS CG HG3 sing N N 314
LYS CD CE sing N N 315
LYS CD HD2 sing N N 316
LYS CD HD3 sing N N 317
LYS CE NZ sing N N 318
LYS CE HE2 sing N N 319
LYS CE HE3 sing N N 320
LYS NZ HZ1 sing N N 321
LYS NZ HZ2 sing N N 322
LYS NZ HZ3 sing N N 323
LYS OXT HXT sing N N 324
MET N CA sing N N 325
MET N H sing N N 326
MET N H2 sing N N 327
MET CA C sing N N 328
MET CA CB sing N N 329
MET CA HA sing N N 330
MET C O doub N N 331
MET C OXT sing N N 332
MET CB CG sing N N 333
MET CB HB2 sing N N 334
MET CB HB3 sing N N 335
MET CG SD sing N N 336
MET CG HG2 sing N N 337
MET CG HG3 sing N N 338
MET SD CE sing N N 339
MET CE HE1 sing N N 340
MET CE HE2 sing N N 341
MET CE HE3 sing N N 342
MET OXT HXT sing N N 343
NAG C1 C2 sing N N 344
NAG C1 O1 sing N N 345
NAG C1 O5 sing N N 346
NAG C1 H1 sing N N 347
NAG C2 C3 sing N N 348
NAG C2 N2 sing N N 349
NAG C2 H2 sing N N 350
NAG C3 C4 sing N N 351
NAG C3 O3 sing N N 352
NAG C3 H3 sing N N 353
NAG C4 C5 sing N N 354
NAG C4 O4 sing N N 355
NAG C4 H4 sing N N 356
NAG C5 C6 sing N N 357
NAG C5 O5 sing N N 358
NAG C5 H5 sing N N 359
NAG C6 O6 sing N N 360
NAG C6 H61 sing N N 361
NAG C6 H62 sing N N 362
NAG C7 C8 sing N N 363
NAG C7 N2 sing N N 364
NAG C7 O7 doub N N 365
NAG C8 H81 sing N N 366
NAG C8 H82 sing N N 367
NAG C8 H83 sing N N 368
NAG N2 HN2 sing N N 369
NAG O1 HO1 sing N N 370
NAG O3 HO3 sing N N 371
NAG O4 HO4 sing N N 372
NAG O6 HO6 sing N N 373
PCA N CA sing N N 374
PCA N CD sing N N 375
PCA N H sing N N 376
PCA CA CB sing N N 377
PCA CA C sing N N 378
PCA CA HA sing N N 379
PCA CB CG sing N N 380
PCA CB HB2 sing N N 381
PCA CB HB3 sing N N 382
PCA CG CD sing N N 383
PCA CG HG2 sing N N 384
PCA CG HG3 sing N N 385
PCA CD OE doub N N 386
PCA C O doub N N 387
PCA C OXT sing N N 388
PCA OXT HXT sing N N 389
PHE N CA sing N N 390
PHE N H sing N N 391
PHE N H2 sing N N 392
PHE CA C sing N N 393
PHE CA CB sing N N 394
PHE CA HA sing N N 395
PHE C O doub N N 396
PHE C OXT sing N N 397
PHE CB CG sing N N 398
PHE CB HB2 sing N N 399
PHE CB HB3 sing N N 400
PHE CG CD1 doub Y N 401
PHE CG CD2 sing Y N 402
PHE CD1 CE1 sing Y N 403
PHE CD1 HD1 sing N N 404
PHE CD2 CE2 doub Y N 405
PHE CD2 HD2 sing N N 406
PHE CE1 CZ doub Y N 407
PHE CE1 HE1 sing N N 408
PHE CE2 CZ sing Y N 409
PHE CE2 HE2 sing N N 410
PHE CZ HZ sing N N 411
PHE OXT HXT sing N N 412
PRO N CA sing N N 413
PRO N CD sing N N 414
PRO N H sing N N 415
PRO CA C sing N N 416
PRO CA CB sing N N 417
PRO CA HA sing N N 418
PRO C O doub N N 419
PRO C OXT sing N N 420
PRO CB CG sing N N 421
PRO CB HB2 sing N N 422
PRO CB HB3 sing N N 423
PRO CG CD sing N N 424
PRO CG HG2 sing N N 425
PRO CG HG3 sing N N 426
PRO CD HD2 sing N N 427
PRO CD HD3 sing N N 428
PRO OXT HXT sing N N 429
SER N CA sing N N 430
SER N H sing N N 431
SER N H2 sing N N 432
SER CA C sing N N 433
SER CA CB sing N N 434
SER CA HA sing N N 435
SER C O doub N N 436
SER C OXT sing N N 437
SER CB OG sing N N 438
SER CB HB2 sing N N 439
SER CB HB3 sing N N 440
SER OG HG sing N N 441
SER OXT HXT sing N N 442
THR N CA sing N N 443
THR N H sing N N 444
THR N H2 sing N N 445
THR CA C sing N N 446
THR CA CB sing N N 447
THR CA HA sing N N 448
THR C O doub N N 449
THR C OXT sing N N 450
THR CB OG1 sing N N 451
THR CB CG2 sing N N 452
THR CB HB sing N N 453
THR OG1 HG1 sing N N 454
THR CG2 HG21 sing N N 455
THR CG2 HG22 sing N N 456
THR CG2 HG23 sing N N 457
THR OXT HXT sing N N 458
TRP N CA sing N N 459
TRP N H sing N N 460
TRP N H2 sing N N 461
TRP CA C sing N N 462
TRP CA CB sing N N 463
TRP CA HA sing N N 464
TRP C O doub N N 465
TRP C OXT sing N N 466
TRP CB CG sing N N 467
TRP CB HB2 sing N N 468
TRP CB HB3 sing N N 469
TRP CG CD1 doub Y N 470
TRP CG CD2 sing Y N 471
TRP CD1 NE1 sing Y N 472
TRP CD1 HD1 sing N N 473
TRP CD2 CE2 doub Y N 474
TRP CD2 CE3 sing Y N 475
TRP NE1 CE2 sing Y N 476
TRP NE1 HE1 sing N N 477
TRP CE2 CZ2 sing Y N 478
TRP CE3 CZ3 doub Y N 479
TRP CE3 HE3 sing N N 480
TRP CZ2 CH2 doub Y N 481
TRP CZ2 HZ2 sing N N 482
TRP CZ3 CH2 sing Y N 483
TRP CZ3 HZ3 sing N N 484
TRP CH2 HH2 sing N N 485
TRP OXT HXT sing N N 486
TYR N CA sing N N 487
TYR N H sing N N 488
TYR N H2 sing N N 489
TYR CA C sing N N 490
TYR CA CB sing N N 491
TYR CA HA sing N N 492
TYR C O doub N N 493
TYR C OXT sing N N 494
TYR CB CG sing N N 495
TYR CB HB2 sing N N 496
TYR CB HB3 sing N N 497
TYR CG CD1 doub Y N 498
TYR CG CD2 sing Y N 499
TYR CD1 CE1 sing Y N 500
TYR CD1 HD1 sing N N 501
TYR CD2 CE2 doub Y N 502
TYR CD2 HD2 sing N N 503
TYR CE1 CZ doub Y N 504
TYR CE1 HE1 sing N N 505
TYR CE2 CZ sing Y N 506
TYR CE2 HE2 sing N N 507
TYR CZ OH sing N N 508
TYR OH HH sing N N 509
TYR OXT HXT sing N N 510
VAL N CA sing N N 511
VAL N H sing N N 512
VAL N H2 sing N N 513
VAL CA C sing N N 514
VAL CA CB sing N N 515
VAL CA HA sing N N 516
VAL C O doub N N 517
VAL C OXT sing N N 518
VAL CB CG1 sing N N 519
VAL CB CG2 sing N N 520
VAL CB HB sing N N 521
VAL CG1 HG11 sing N N 522
VAL CG1 HG12 sing N N 523
VAL CG1 HG13 sing N N 524
VAL CG2 HG21 sing N N 525
VAL CG2 HG22 sing N N 526
VAL CG2 HG23 sing N N 527
VAL OXT HXT sing N N 528
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 FUC 2 n
2 GAL 3 n
2 FUC 4 n
2 NAG 5 n
2 BMA 6 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 2CCV
_pdbx_initial_refinement_model.details 'PDB entry 2CCV'
#
_atom_sites.entry_id 4Q56
_atom_sites.fract_transf_matrix[1][1] 0.020877
_atom_sites.fract_transf_matrix[1][2] 0.012053
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024106
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.003552
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
NA
O
S
ZN
#
loop_