HEADER SUGAR BINDING PROTEIN 16-APR-14 4Q56 TITLE STRUCTURE OF HELIX ASPERSA AGGLUTININ WITH NATURAL GLYCOSYLATION AND TITLE 2 N-ACETYL-ALPHA-D-GALACTOSAMINE (GALNAC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HELIX ASPERSA AGGLUTININ (HAA); COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIX ASPERSA; SOURCE 3 ORGANISM_TAXID: 6535 KEYWDS CARBOHYDRATE-BINDING PROTEIN, SUGAR BINDING PROTEIN, H-TYPE LECTIN, KEYWDS 2 SNAIL MUCUS EXPDTA X-RAY DIFFRACTION AUTHOR A.J.PIETRZYK,A.BUJACZ,G.BUJACZ REVDAT 6 20-SEP-23 4Q56 1 HETSYN LINK REVDAT 5 29-JUL-20 4Q56 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 25-DEC-19 4Q56 1 SEQRES LINK REVDAT 3 07-MAR-18 4Q56 1 REMARK REVDAT 2 28-OCT-15 4Q56 1 JRNL REVDAT 1 14-OCT-15 4Q56 0 JRNL AUTH A.J.PIETRZYK,A.BUJACZ,P.MAK,B.POTEMPA,T.NIEDZIELA JRNL TITL STRUCTURAL STUDIES OF HELIX ASPERSA AGGLUTININ COMPLEXED JRNL TITL 2 WITH GALNAC: A LECTIN THAT SERVES AS A DIAGNOSTIC TOOL. JRNL REF INT.J.BIOL.MACROMOL. V. 81 1059 2015 JRNL REFN ISSN 0141-8130 JRNL PMID 26416237 JRNL DOI 10.1016/J.IJBIOMAC.2015.09.044 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1843 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 948 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 874 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1309 ; 2.013 ; 2.068 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2013 ; 0.876 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 112 ; 6.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ;27.939 ;24.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 147 ;12.463 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 994 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 197 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 416 ; 2.936 ; 2.785 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 414 ; 2.897 ; 2.769 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 520 ; 3.610 ; 4.161 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 513 ; 4.145 ; 4.331 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 529 ; 4.431 ; 3.169 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 511 ; 4.835 ; 3.195 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 758 ; 5.397 ; 4.744 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1045 ; 6.834 ;25.375 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 989 ; 5.301 ;24.168 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1818 ; 5.082 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 49 ;29.808 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1862 ;14.734 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 46.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.54 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.01140 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CCV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M ZN(CH3COO)2, 0.1 M HEPES, PH REMARK 280 7.0, 40% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 23.95000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 13.82754 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.84333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 23.95000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 13.82754 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.84333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 23.95000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 13.82754 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.84333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 23.95000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 13.82754 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.84333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 23.95000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 13.82754 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.84333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 23.95000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 13.82754 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.84333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 27.65508 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 187.68667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 27.65508 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 187.68667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 27.65508 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 187.68667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 27.65508 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 187.68667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 27.65508 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 187.68667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 27.65508 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 187.68667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 47.90000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 23.95000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 41.48262 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 23.95000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -13.82754 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 187.68667 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 27.65508 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 187.68667 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 47.90000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 27.65508 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 187.68667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 203 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A 210 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 396 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 411 O HOH A 413 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 85 -137.80 50.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 59 O REMARK 620 2 GLN A 59 OE1 70.1 REMARK 620 3 HOH A 337 O 79.9 125.1 REMARK 620 4 HOH A 396 O 100.1 54.9 180.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 ACT A 201 O 111.7 REMARK 620 3 ACT A 201 OXT 91.4 55.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CGZ RELATED DB: PDB REMARK 900 RELATED ID: 2CGY RELATED DB: PDB REMARK 900 RELATED ID: 2CCV RELATED DB: PDB REMARK 900 RELATED ID: 2CE6 RELATED DB: PDB DBREF 4Q56 A 1 101 PDB 4Q56 4Q56 1 101 SEQRES 1 A 101 PCA ARG VAL GLN SER GLY LYS ILE ASP CYS GLY ASN ASP SEQRES 2 A 101 VAL SER TRP ALA LYS VAL PRO SER ASP ASP PRO GLY ARG SEQRES 3 A 101 ASP ASN THR ARG GLU LEU ALA LYS ASN ILE THR PHE ALA SEQRES 4 A 101 SER PRO TYR CYS ARG PRO PRO VAL VAL LEU LEU SER ILE SEQRES 5 A 101 THR GLN LEU ASP VAL GLU GLN SER GLN ASN LEU ARG VAL SEQRES 6 A 101 ILE ALA ARG LEU TYR SER VAL SER PRO THR GLY PHE LYS SEQRES 7 A 101 ALA SER CYS TYR THR TRP HIS ASN THR LYS VAL TYR SER SEQRES 8 A 101 MET SER ILE SER TRP ILE SER ILE GLU ASN MODRES 4Q56 ASN A 35 ASN GLYCOSYLATION SITE MODRES 4Q56 PCA A 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET NAG B 1 14 HET FUC B 2 10 HET GAL B 3 11 HET FUC B 4 10 HET NAG B 5 14 HET BMA B 6 11 HET ACT A 201 4 HET A2G A 202 15 HET NA A 203 1 HET ZN A 210 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ACT ACETATE ION HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 FUC 2(C6 H12 O5) FORMUL 2 GAL C6 H12 O6 FORMUL 2 BMA C6 H12 O6 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 A2G C8 H15 N O6 FORMUL 5 NA NA 1+ FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *119(H2 O) HELIX 1 1 ASN A 12 TRP A 16 5 5 SHEET 1 A 3 VAL A 3 ASP A 9 0 SHEET 2 A 3 VAL A 89 ILE A 99 -1 O ILE A 94 N ILE A 8 SHEET 3 A 3 VAL A 47 VAL A 57 -1 N ASP A 56 O TYR A 90 SHEET 1 B 4 ALA A 17 LYS A 18 0 SHEET 2 B 4 ARG A 30 THR A 37 -1 O GLU A 31 N ALA A 17 SHEET 3 B 4 GLY A 76 THR A 83 -1 O PHE A 77 N ILE A 36 SHEET 4 B 4 ILE A 66 VAL A 72 -1 N ARG A 68 O SER A 80 SSBOND 1 CYS A 10 CYS A 81 1555 1555 2.04 SSBOND 2 CYS A 43 CYS A 43 1555 5556 2.03 LINK C PCA A 1 N ARG A 2 1555 1555 1.33 LINK ND2 ASN A 35 C1 NAG B 1 1555 1555 1.47 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 5 1555 1555 1.44 LINK O4 FUC B 2 C1 GAL B 3 1555 1555 1.42 LINK O2 GAL B 3 C1 FUC B 4 1555 1555 1.44 LINK O4 NAG B 5 C1 BMA B 6 1555 1555 1.43 LINK O GLN A 59 NA NA A 203 1555 1555 2.48 LINK OE1 GLN A 59 NA NA A 203 1555 1555 2.53 LINK NE2 HIS A 85 ZN ZN A 210 1555 1555 2.05 LINK O ACT A 201 ZN ZN A 210 1555 1555 1.94 LINK OXT ACT A 201 ZN ZN A 210 1555 1555 2.52 LINK NA NA A 203 O HOH A 337 1555 1555 2.47 LINK NA NA A 203 O HOH A 396 1555 1555 2.72 CRYST1 47.900 47.900 281.530 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020877 0.012053 0.000000 0.00000 SCALE2 0.000000 0.024106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003552 0.00000 HETATM 1 N PCA A 1 2.119 2.327 137.793 0.70 74.71 N ANISOU 1 N PCA A 1 9251 9344 9791 639 1960 -1255 N HETATM 2 CA PCA A 1 3.549 2.349 138.070 0.70 73.29 C ANISOU 2 CA PCA A 1 9711 8346 9787 -547 341 -292 C HETATM 3 CB PCA A 1 4.002 0.930 137.756 0.70 78.91 C ANISOU 3 CB PCA A 1 9284 9147 11549 654 -157 -181 C HETATM 4 CG PCA A 1 2.820 0.265 137.055 0.70 77.76 C ANISOU 4 CG PCA A 1 10531 8893 10119 287 -102 -243 C HETATM 5 CD PCA A 1 1.842 1.396 136.891 0.70 74.88 C ANISOU 5 CD PCA A 1 8543 11036 8869 788 -357 -694 C HETATM 6 OE PCA A 1 0.993 1.450 136.013 0.70 72.77 O ANISOU 6 OE PCA A 1 9798 12141 5708 -490 896 3610 O HETATM 7 C PCA A 1 4.185 3.349 137.158 0.70 56.09 C ANISOU 7 C PCA A 1 7039 11334 2937 355 -571 -178 C HETATM 8 O PCA A 1 3.464 4.081 136.486 0.70 70.06 O ANISOU 8 O PCA A 1 11795 6135 8689 1610 -389 342 O