HEADER UNKNOWN FUNCTION, PROTEIN BINDING 16-APR-14 4Q5H TITLE SHIGELLA EFFECTOR KINASE OSPG BOUND TO AMPPNP AND E2-UB UBCH7-UB TITLE 2 CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE OSPG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-193; COMPND 5 SYNONYM: EFFECTOR PROTEIN OSPG; COMPND 6 EC: 2.7.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: POLYUBIQUITIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: UBIQUITIN; COMPND 12 EC: 6.3.2.19; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 L3; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: L-UBC, UBCH7, UBIQUITIN CARRIER PROTEIN L3, UBIQUITIN- COMPND 19 CONJUGATING ENZYME E2-F1, UBIQUITIN-PROTEIN LIGASE L3; COMPND 20 EC: 6.3.2.19; COMPND 21 ENGINEERED: YES; COMPND 22 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA SONNEI; SOURCE 3 ORGANISM_TAXID: 300269; SOURCE 4 STRAIN: 2457T; SOURCE 5 GENE: OSPG, SSON_P170; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: SCD2, UBE2L3, UBI4, YLL039C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 22 MOL_ID: 3; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: UBCE7, UBCH7, UBE2L3, UBI4; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 29 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PROTEIN-PROTEIN COMPLEX, STRUCTURAL GENOMICS, MONTREAL-KINGSTON KEYWDS 2 BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, KINASE FOLD, KEYWDS 3 INHIBITION OF NF-KB PATHWAY, UNKNOWN FUNCTION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.CYGLER,A.M.GRISHIN,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 3 20-SEP-23 4Q5H 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4Q5H 1 REMARK REVDAT 1 02-JUL-14 4Q5H 0 JRNL AUTH A.M.GRISHIN,T.E.CONDOS,K.R.BARBER,F.X.CAMPBELL-VALOIS, JRNL AUTH 2 C.PARSOT,G.S.SHAW,M.CYGLER JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF HOST PROTEIN JRNL TITL 2 UBIQUITINATION BY SHIGELLA EFFECTOR KINASE OSPG. JRNL REF STRUCTURE V. 22 878 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24856362 JRNL DOI 10.1016/J.STR.2014.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9506 - 4.5755 0.99 2861 139 0.1780 0.2075 REMARK 3 2 4.5755 - 3.6322 1.00 2710 162 0.1509 0.1866 REMARK 3 3 3.6322 - 3.1732 1.00 2712 134 0.1856 0.2065 REMARK 3 4 3.1732 - 2.8832 1.00 2687 144 0.2004 0.2409 REMARK 3 5 2.8832 - 2.6765 1.00 2665 151 0.2112 0.2449 REMARK 3 6 2.6765 - 2.5188 1.00 2673 134 0.2076 0.2730 REMARK 3 7 2.5188 - 2.3926 1.00 2661 151 0.2135 0.2402 REMARK 3 8 2.3926 - 2.2885 1.00 2645 142 0.2152 0.2795 REMARK 3 9 2.2885 - 2.2004 1.00 2645 139 0.2159 0.2838 REMARK 3 10 2.2004 - 2.1244 1.00 2643 146 0.2426 0.2909 REMARK 3 11 2.1244 - 2.0580 1.00 2643 140 0.2384 0.2796 REMARK 3 12 2.0580 - 1.9992 1.00 2638 138 0.2724 0.3288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3393 REMARK 3 ANGLE : 0.989 4618 REMARK 3 CHIRALITY : 0.040 511 REMARK 3 PLANARITY : 0.004 602 REMARK 3 DIHEDRAL : 14.270 1327 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 25:193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6285 -55.2719 -2.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.1697 REMARK 3 T33: 0.2119 T12: 0.0266 REMARK 3 T13: 0.0172 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.6455 L22: 2.6339 REMARK 3 L33: 2.3540 L12: 0.4437 REMARK 3 L13: -0.7212 L23: -1.1083 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: 0.0522 S13: -0.1439 REMARK 3 S21: -0.0713 S22: 0.0206 S23: -0.2017 REMARK 3 S31: 0.1581 S32: 0.1031 S33: 0.0283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 301:423 ) OR ( CHAIN C AND RESID REMARK 3 201:288 ) OR ( CHAIN B AND RESID 101:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8893 -45.5425 -4.3037 REMARK 3 T TENSOR REMARK 3 T11: 0.3400 T22: 0.3058 REMARK 3 T33: 0.2851 T12: -0.0055 REMARK 3 T13: -0.0125 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5623 L22: 0.3598 REMARK 3 L33: 0.5412 L12: -0.1338 REMARK 3 L13: -0.0943 L23: -0.1878 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.0726 S13: 0.0368 REMARK 3 S21: 0.0552 S22: -0.0390 S23: -0.0184 REMARK 3 S31: -0.0653 S32: 0.0126 S33: 0.0427 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9555 -34.5671 -16.6533 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.2989 REMARK 3 T33: 0.3417 T12: -0.0478 REMARK 3 T13: 0.0425 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 4.0694 L22: 4.4875 REMARK 3 L33: 6.4406 L12: 0.9908 REMARK 3 L13: 0.5673 L23: -0.5073 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.6260 S13: 0.5069 REMARK 3 S21: -0.0394 S22: 0.0536 S23: -0.2831 REMARK 3 S31: -0.6463 S32: 0.3590 S33: 0.0133 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 0:154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5482 -31.0503 -5.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.2519 REMARK 3 T33: 0.2401 T12: 0.0267 REMARK 3 T13: -0.0268 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.2760 L22: 5.2083 REMARK 3 L33: 3.9232 L12: -0.8860 REMARK 3 L13: -0.3387 L23: -2.1621 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: -0.1091 S13: 0.1962 REMARK 3 S21: 0.2631 S22: 0.0120 S23: 0.2661 REMARK 3 S31: -0.7680 S32: -0.1820 S33: -0.0378 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 202:202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5339 -60.9524 -3.3554 REMARK 3 T TENSOR REMARK 3 T11: 0.4640 T22: 0.4397 REMARK 3 T33: 0.5149 T12: 0.0352 REMARK 3 T13: 0.0762 T23: 0.1279 REMARK 3 L TENSOR REMARK 3 L11: 3.9164 L22: 1.4295 REMARK 3 L33: 4.4320 L12: -0.1873 REMARK 3 L13: 2.2514 L23: 2.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.2480 S13: -0.1351 REMARK 3 S21: -0.3315 S22: -0.1356 S23: -0.7541 REMARK 3 S31: 0.2767 S32: 0.8366 S33: 0.2878 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 77.2 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DCM WITH CRYO-COOLED 1ST CRYSTAL REMARK 200 SAGITALLY BENT 2ND CRYSTAL REMARK 200 FOLLOWED BY VERTICALLY FOCUSING REMARK 200 MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33962 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4QSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES 8.2, 15% PEG 4000, 100 MM REMARK 280 MGCL2, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.70800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.93650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.32900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.93650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.70800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.32900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 LYS A 194 REMARK 465 TYR A 195 REMARK 465 LEU A 196 REMARK 465 GLY C -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 20 CG CD CE NZ REMARK 470 LYS C 150 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2G ANP A 202 O HOH A 408 2.01 REMARK 500 OD1 ASN A 143 O2G ANP A 202 2.13 REMARK 500 OE1 GLU C 127 O HOH C 278 2.14 REMARK 500 OD1 ASP A 138 NH2 ARG A 179 2.14 REMARK 500 OE2 GLU C 149 O HOH C 270 2.14 REMARK 500 OE1 GLN C 84 O HOH C 212 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 192 36.69 -80.04 REMARK 500 LYS C 20 -38.28 67.86 REMARK 500 ASP C 132 76.19 -151.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD2 REMARK 620 2 ASP A 157 OD1 53.8 REMARK 620 3 HOH A 377 O 92.6 71.8 REMARK 620 4 HOH A 378 O 114.9 73.3 105.2 REMARK 620 5 HOH A 396 O 60.3 105.5 80.7 172.9 REMARK 620 6 HOH A 397 O 138.9 166.8 101.2 98.5 83.8 REMARK 620 7 HOH A 398 O 63.5 92.6 156.1 86.7 86.4 97.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QSE RELATED DB: PDB REMARK 900 SHIGELLA EFFECTOR KINASE OSPG BOUND TO E2-UB UBCH7-UB CONJUGATE DBREF 4Q5H A 26 196 UNP Q3YTH2 OSPG_SHISS 26 196 DBREF 4Q5H B 1 76 UNP P0CG63 UBI4P_YEAST 1 76 DBREF 4Q5H C 1 154 UNP P68036 UB2L3_HUMAN 1 154 SEQADV 4Q5H SER A 23 UNP Q3YTH2 EXPRESSION TAG SEQADV 4Q5H ASN A 24 UNP Q3YTH2 EXPRESSION TAG SEQADV 4Q5H ALA A 25 UNP Q3YTH2 EXPRESSION TAG SEQADV 4Q5H ARG B 48 UNP P0CG63 LYS 48 ENGINEERED MUTATION SEQADV 4Q5H CYS B 76 UNP P0CG63 GLY 76 ENGINEERED MUTATION SEQADV 4Q5H GLY C -1 UNP P68036 EXPRESSION TAG SEQADV 4Q5H HIS C 0 UNP P68036 EXPRESSION TAG SEQADV 4Q5H SER C 17 UNP P68036 CYS 17 ENGINEERED MUTATION SEQADV 4Q5H SER C 137 UNP P68036 CYS 137 ENGINEERED MUTATION SEQRES 1 A 174 SER ASN ALA GLU PRO ILE LEU GLY LYS LEU ILE GLY GLN SEQRES 2 A 174 GLY SER THR ALA GLU ILE PHE GLU ASP VAL ASN ASP SER SEQRES 3 A 174 SER ALA LEU TYR LYS LYS TYR ASP LEU ILE GLY ASN GLN SEQRES 4 A 174 TYR ASN GLU ILE LEU GLU MET ALA TRP GLN GLU SER GLU SEQRES 5 A 174 LEU PHE ASN ALA PHE TYR GLY ASP GLU ALA SER VAL VAL SEQRES 6 A 174 ILE GLN TYR GLY GLY ASP VAL TYR LEU ARG MET LEU ARG SEQRES 7 A 174 VAL PRO GLY THR PRO LEU SER ASP ILE ASP THR ALA ASP SEQRES 8 A 174 ILE PRO ASP ASN ILE GLU SER LEU TYR LEU GLN LEU ILE SEQRES 9 A 174 CYS LYS LEU ASN GLU LEU SER ILE ILE HIS TYR ASP LEU SEQRES 10 A 174 ASN THR GLY ASN MET LEU TYR ASP LYS GLU SER GLU SER SEQRES 11 A 174 LEU PHE PRO ILE ASP PHE ARG ASN ILE TYR ALA GLU TYR SEQRES 12 A 174 TYR ALA ALA THR LYS LYS ASP LYS GLU ILE ILE ASP ARG SEQRES 13 A 174 ARG LEU GLN MET ARG THR ASN ASP PHE TYR SER LEU LEU SEQRES 14 A 174 ASN ARG LYS TYR LEU SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU SER SER ASP THR ILE ASP ASN VAL SEQRES 3 B 76 LYS SER LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY CYS SEQRES 1 C 156 GLY HIS MET ALA ALA SER ARG ARG LEU MET LYS GLU LEU SEQRES 2 C 156 GLU GLU ILE ARG LYS SER GLY MET LYS ASN PHE ARG ASN SEQRES 3 C 156 ILE GLN VAL ASP GLU ALA ASN LEU LEU THR TRP GLN GLY SEQRES 4 C 156 LEU ILE VAL PRO ASP ASN PRO PRO TYR ASP LYS GLY ALA SEQRES 5 C 156 PHE ARG ILE GLU ILE ASN PHE PRO ALA GLU TYR PRO PHE SEQRES 6 C 156 LYS PRO PRO LYS ILE THR PHE LYS THR LYS ILE TYR HIS SEQRES 7 C 156 PRO ASN ILE ASP GLU LYS GLY GLN VAL CYS LEU PRO VAL SEQRES 8 C 156 ILE SER ALA GLU ASN TRP LYS PRO ALA THR LYS THR ASP SEQRES 9 C 156 GLN VAL ILE GLN SER LEU ILE ALA LEU VAL ASN ASP PRO SEQRES 10 C 156 GLN PRO GLU HIS PRO LEU ARG ALA ASP LEU ALA GLU GLU SEQRES 11 C 156 TYR SER LYS ASP ARG LYS LYS PHE SER LYS ASN ALA GLU SEQRES 12 C 156 GLU PHE THR LYS LYS TYR GLY GLU LYS ARG PRO VAL ASP HET MG A 201 1 HET ANP A 202 31 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 4 MG MG 2+ FORMUL 5 ANP C10 H17 N6 O12 P3 FORMUL 6 HOH *230(H2 O) HELIX 1 1 GLN A 61 GLY A 81 1 21 HELIX 2 2 SER A 107 ILE A 109 5 3 HELIX 3 3 ASP A 110 ILE A 114 5 5 HELIX 4 4 ASN A 117 LEU A 132 1 16 HELIX 5 5 ILE A 161 ALA A 168 1 8 HELIX 6 6 THR A 169 ASN A 192 1 24 HELIX 7 7 THR B 22 GLY B 35 1 14 HELIX 8 8 PRO B 37 ASP B 39 5 3 HELIX 9 9 LEU B 56 ASN B 60 5 5 HELIX 10 10 MET C 1 GLY C 18 1 18 HELIX 11 11 LEU C 87 SER C 91 5 5 HELIX 12 12 LYS C 100 ASP C 114 1 15 HELIX 13 13 ARG C 122 ASP C 132 1 11 HELIX 14 14 ASP C 132 GLY C 148 1 17 SHEET 1 A 5 LEU A 29 GLN A 35 0 SHEET 2 A 5 ALA A 39 ASP A 44 -1 O ILE A 41 N GLY A 34 SHEET 3 A 5 ASP A 47 TYR A 55 -1 O LYS A 54 N GLU A 40 SHEET 4 A 5 ASP A 93 LEU A 99 -1 O MET A 98 N LEU A 51 SHEET 5 A 5 SER A 85 TYR A 90 -1 N ILE A 88 O TYR A 95 SHEET 1 B 3 THR A 104 PRO A 105 0 SHEET 2 B 3 MET A 144 ASP A 147 -1 O TYR A 146 N THR A 104 SHEET 3 B 3 SER A 152 PRO A 155 -1 O PHE A 154 N LEU A 145 SHEET 1 C 5 THR B 12 GLU B 16 0 SHEET 2 C 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 C 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 C 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 C 5 ARG B 48 GLN B 49 -1 O ARG B 48 N PHE B 45 SHEET 1 D 4 PHE C 22 ASP C 28 0 SHEET 2 D 4 ASN C 31 ILE C 39 -1 O LEU C 38 N ARG C 23 SHEET 3 D 4 PHE C 51 ASN C 56 -1 O ILE C 55 N TRP C 35 SHEET 4 D 4 LYS C 67 PHE C 70 -1 O THR C 69 N GLU C 54 SSBOND 1 CYS B 76 CYS C 86 1555 1555 2.03 LINK OD2 ASP A 157 MG MG A 201 1555 1555 2.31 LINK OD1 ASP A 157 MG MG A 201 1555 1555 2.46 LINK MG MG A 201 O HOH A 377 1555 1555 2.33 LINK MG MG A 201 O HOH A 378 1555 1555 2.10 LINK MG MG A 201 O HOH A 396 1555 1555 2.35 LINK MG MG A 201 O HOH A 397 1555 1555 1.89 LINK MG MG A 201 O HOH A 398 1555 1555 2.30 CISPEP 1 PRO C 44 PRO C 45 0 7.08 CISPEP 2 TYR C 61 PRO C 62 0 6.15 SITE 1 AC1 6 ASP A 157 HOH A 377 HOH A 378 HOH A 396 SITE 2 AC1 6 HOH A 397 HOH A 398 SITE 1 AC2 19 GLY A 36 THR A 38 ALA A 39 ILE A 41 SITE 2 AC2 19 LEU A 51 LYS A 53 PHE A 76 MET A 98 SITE 3 AC2 19 LEU A 99 VAL A 101 PRO A 105 GLY A 142 SITE 4 AC2 19 ASN A 143 ILE A 156 ASP A 157 HOH A 329 SITE 5 AC2 19 HOH A 377 HOH A 380 HOH A 408 CRYST1 67.416 84.658 85.873 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011645 0.00000