HEADER OXIDOREDUCTASE 17-APR-14 4Q5O TITLE CRYSTAL STRUCTURE OF ECTD FROM S. ALASKENSIS WITH 2-OXOGLUTARATE AND TITLE 2 5-HYDROXYECTOINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTOINE HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOPYXIS ALASKENSIS RB2256; SOURCE 3 ORGANISM_TAXID: 317655; SOURCE 4 STRAIN: DSM 13593 / LMG 18877 / RB2256; SOURCE 5 GENE: SALA_2952; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS JELLY-ROLL OR CUPIN FOLD, ECTOINE HYDROXYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HOEPPNER,N.WIDDERICH,E.BREMER,S.H.SMITS REVDAT 3 20-SEP-23 4Q5O 1 REMARK SEQADV LINK REVDAT 2 12-NOV-14 4Q5O 1 JRNL REVDAT 1 10-SEP-14 4Q5O 0 JRNL AUTH A.HOPPNER,N.WIDDERICH,M.LENDERS,E.BREMER,S.H.SMITS JRNL TITL CRYSTAL STRUCTURE OF THE ECTOINE HYDROXYLASE, A SNAPSHOT OF JRNL TITL 2 THE ACTIVE SITE. JRNL REF J.BIOL.CHEM. V. 289 29570 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25172507 JRNL DOI 10.1074/JBC.M114.576769 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9409 - 5.0477 1.00 2890 156 0.1920 0.2289 REMARK 3 2 5.0477 - 4.0076 1.00 2767 143 0.1691 0.2583 REMARK 3 3 4.0076 - 3.5014 1.00 2746 139 0.1984 0.2565 REMARK 3 4 3.5014 - 3.1814 1.00 2733 144 0.2309 0.3367 REMARK 3 5 3.1814 - 2.9534 1.00 2706 155 0.2437 0.3535 REMARK 3 6 2.9534 - 2.7793 1.00 2684 149 0.2643 0.3566 REMARK 3 7 2.7793 - 2.6401 1.00 2672 149 0.3021 0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 4564 REMARK 3 ANGLE : 1.972 6232 REMARK 3 CHIRALITY : 0.081 670 REMARK 3 PLANARITY : 0.007 832 REMARK 3 DIHEDRAL : 15.181 1670 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4MHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0, 200 MM CA-ACETATE, REMARK 280 30% (W/V) PEG 400 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.50200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.43950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.53800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.43950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.50200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.53800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 GLU A 0 REMARK 465 MET A 1 REMARK 465 VAL A 192 REMARK 465 GLY A 193 REMARK 465 GLU A 194 REMARK 465 THR A 195 REMARK 465 PRO A 196 REMARK 465 ASP A 197 REMARK 465 ASP A 198 REMARK 465 HIS A 199 REMARK 465 TYR A 200 REMARK 465 LEU A 201 REMARK 465 SER A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 TYR A 209 REMARK 465 GLU A 302 REMARK 465 THR A 303 REMARK 465 VAL A 304 REMARK 465 PRO A 305 REMARK 465 ALA A 306 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 GLU B 0 REMARK 465 MET B 1 REMARK 465 VAL B 192 REMARK 465 GLY B 193 REMARK 465 GLU B 194 REMARK 465 THR B 195 REMARK 465 PRO B 196 REMARK 465 ASP B 197 REMARK 465 ASP B 198 REMARK 465 HIS B 199 REMARK 465 TYR B 200 REMARK 465 LEU B 201 REMARK 465 SER B 202 REMARK 465 SER B 203 REMARK 465 LEU B 204 REMARK 465 LYS B 205 REMARK 465 LYS B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 TYR B 209 REMARK 465 GLU B 302 REMARK 465 THR B 303 REMARK 465 VAL B 304 REMARK 465 PRO B 305 REMARK 465 ALA B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 PRO A 279 CG CD REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 PRO B 279 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 146 OG1 6CS A 403 1.75 REMARK 500 OD1 ASP B 146 OG1 6CS B 403 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 279 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 PRO B 84 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO B 84 C - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO B 279 N - CA - CB ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 9 34.98 -140.42 REMARK 500 PRO A 84 60.27 -58.59 REMARK 500 GLN A 85 -12.34 179.49 REMARK 500 PHE A 136 -45.70 77.34 REMARK 500 HIS A 144 149.47 -176.89 REMARK 500 ASN A 175 38.19 -98.01 REMARK 500 PHE A 274 41.01 -95.20 REMARK 500 VAL A 276 -119.28 -89.29 REMARK 500 GLU A 277 32.34 21.60 REMARK 500 PRO A 279 -137.12 -122.97 REMARK 500 GLU A 289 78.78 -115.34 REMARK 500 GLU B 83 52.90 -94.66 REMARK 500 PRO B 84 -62.18 17.33 REMARK 500 SER B 86 -154.99 -173.39 REMARK 500 ASN B 87 8.81 -160.14 REMARK 500 GLN B 98 -63.14 -96.77 REMARK 500 PHE B 136 -42.36 72.57 REMARK 500 TYR B 142 158.47 -44.42 REMARK 500 ARG B 160 49.50 -144.33 REMARK 500 ASN B 175 35.46 -93.30 REMARK 500 PHE B 274 48.74 -68.37 REMARK 500 VAL B 276 -137.78 -109.45 REMARK 500 GLU B 277 22.18 38.58 REMARK 500 PRO B 279 -142.77 -106.81 REMARK 500 PRO B 281 143.87 -39.90 REMARK 500 PRO B 299 -161.70 -75.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 ASP A 146 OD1 84.0 REMARK 620 3 HIS A 245 NE2 78.5 84.9 REMARK 620 4 AKG A 402 O5 103.5 166.6 85.7 REMARK 620 5 6CS A 403 OG1 64.8 46.6 119.3 146.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 144 NE2 REMARK 620 2 ASP B 146 OD1 63.3 REMARK 620 3 ASP B 146 OD2 121.4 58.3 REMARK 620 4 HIS B 245 NE2 83.5 76.6 87.5 REMARK 620 5 AKG B 402 O5 78.8 139.5 157.9 85.9 REMARK 620 6 AKG B 402 O2 152.3 138.1 81.4 115.4 82.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6CS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6CS B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MHU RELATED DB: PDB REMARK 900 RELATED ID: 4MHR RELATED DB: PDB REMARK 900 RELATED ID: 4NMI RELATED DB: PDB DBREF 4Q5O A 1 306 UNP Q1GNW5 Q1GNW5_SPHAL 1 306 DBREF 4Q5O B 1 306 UNP Q1GNW5 Q1GNW5_SPHAL 1 306 SEQADV 4Q5O HIS A -7 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS A -6 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS A -5 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS A -4 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS A -3 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS A -2 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O SER A -1 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O GLU A 0 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS B -7 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS B -6 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS B -5 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS B -4 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS B -3 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O HIS B -2 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O SER B -1 UNP Q1GNW5 EXPRESSION TAG SEQADV 4Q5O GLU B 0 UNP Q1GNW5 EXPRESSION TAG SEQRES 1 A 314 HIS HIS HIS HIS HIS HIS SER GLU MET GLN ASP LEU TYR SEQRES 2 A 314 PRO SER ARG GLN ARG ALA ASP ALA GLU MET ARG PRO ARG SEQRES 3 A 314 LEU ASP PRO VAL VAL HIS SER GLU TRP THR ASN ASP ALA SEQRES 4 A 314 PRO ILE SER ALA ARG GLN ALA ALA ALA PHE ASP ARG ASP SEQRES 5 A 314 GLY TYR ILE VAL LEU GLU ASP ILE PHE SER ALA ASP GLU SEQRES 6 A 314 VAL ALA PHE LEU GLN LYS ALA ALA GLY ASN LEU LEU ALA SEQRES 7 A 314 ASP PRO ALA ALA LEU ASP ALA ASP THR ILE VAL THR GLU SEQRES 8 A 314 PRO GLN SER ASN GLU ILE ARG SER ILE PHE GLU ILE HIS SEQRES 9 A 314 ALA GLN SER PRO VAL MET ALA ARG LEU ALA ALA ASP ALA SEQRES 10 A 314 ARG LEU ALA ASP VAL ALA ARG PHE LEU LEU GLY ASP GLU SEQRES 11 A 314 VAL TYR ILE HIS GLN SER ARG LEU ASN TYR LYS PRO GLY SEQRES 12 A 314 PHE LYS GLY ARG GLU PHE TYR TRP HIS SER ASP PHE GLU SEQRES 13 A 314 THR TRP HIS VAL GLU ASP GLY MET PRO ARG MET ARG ALA SEQRES 14 A 314 LEU SER MET SER VAL LEU LEU ALA GLU ASN THR PRO HIS SEQRES 15 A 314 ASN GLY PRO LEU MET VAL ILE PRO GLY SER HIS ARG THR SEQRES 16 A 314 TYR LEU THR CYS VAL GLY GLU THR PRO ASP ASP HIS TYR SEQRES 17 A 314 LEU SER SER LEU LYS LYS GLN GLU TYR GLY VAL PRO ASP SEQRES 18 A 314 GLU GLU SER LEU ALA GLU LEU ALA HIS ARG HIS GLY ILE SEQRES 19 A 314 VAL ALA PRO THR GLY LYS PRO GLY THR VAL ILE LEU PHE SEQRES 20 A 314 ASP CYS ASN LEU MET HIS GLY SER ASN GLY ASN ILE THR SEQRES 21 A 314 PRO PHE PRO ARG ALA ASN ALA PHE LEU VAL TYR ASN ALA SEQRES 22 A 314 VAL SER ASN ARG LEU GLU LYS PRO PHE GLY VAL GLU LYS SEQRES 23 A 314 PRO ARG PRO TRP PHE LEU ALA ARG ARG GLY GLU PRO ALA SEQRES 24 A 314 ALA LEU ARG VAL GLU ARG GLY PRO LEU VAL GLU THR VAL SEQRES 25 A 314 PRO ALA SEQRES 1 B 314 HIS HIS HIS HIS HIS HIS SER GLU MET GLN ASP LEU TYR SEQRES 2 B 314 PRO SER ARG GLN ARG ALA ASP ALA GLU MET ARG PRO ARG SEQRES 3 B 314 LEU ASP PRO VAL VAL HIS SER GLU TRP THR ASN ASP ALA SEQRES 4 B 314 PRO ILE SER ALA ARG GLN ALA ALA ALA PHE ASP ARG ASP SEQRES 5 B 314 GLY TYR ILE VAL LEU GLU ASP ILE PHE SER ALA ASP GLU SEQRES 6 B 314 VAL ALA PHE LEU GLN LYS ALA ALA GLY ASN LEU LEU ALA SEQRES 7 B 314 ASP PRO ALA ALA LEU ASP ALA ASP THR ILE VAL THR GLU SEQRES 8 B 314 PRO GLN SER ASN GLU ILE ARG SER ILE PHE GLU ILE HIS SEQRES 9 B 314 ALA GLN SER PRO VAL MET ALA ARG LEU ALA ALA ASP ALA SEQRES 10 B 314 ARG LEU ALA ASP VAL ALA ARG PHE LEU LEU GLY ASP GLU SEQRES 11 B 314 VAL TYR ILE HIS GLN SER ARG LEU ASN TYR LYS PRO GLY SEQRES 12 B 314 PHE LYS GLY ARG GLU PHE TYR TRP HIS SER ASP PHE GLU SEQRES 13 B 314 THR TRP HIS VAL GLU ASP GLY MET PRO ARG MET ARG ALA SEQRES 14 B 314 LEU SER MET SER VAL LEU LEU ALA GLU ASN THR PRO HIS SEQRES 15 B 314 ASN GLY PRO LEU MET VAL ILE PRO GLY SER HIS ARG THR SEQRES 16 B 314 TYR LEU THR CYS VAL GLY GLU THR PRO ASP ASP HIS TYR SEQRES 17 B 314 LEU SER SER LEU LYS LYS GLN GLU TYR GLY VAL PRO ASP SEQRES 18 B 314 GLU GLU SER LEU ALA GLU LEU ALA HIS ARG HIS GLY ILE SEQRES 19 B 314 VAL ALA PRO THR GLY LYS PRO GLY THR VAL ILE LEU PHE SEQRES 20 B 314 ASP CYS ASN LEU MET HIS GLY SER ASN GLY ASN ILE THR SEQRES 21 B 314 PRO PHE PRO ARG ALA ASN ALA PHE LEU VAL TYR ASN ALA SEQRES 22 B 314 VAL SER ASN ARG LEU GLU LYS PRO PHE GLY VAL GLU LYS SEQRES 23 B 314 PRO ARG PRO TRP PHE LEU ALA ARG ARG GLY GLU PRO ALA SEQRES 24 B 314 ALA LEU ARG VAL GLU ARG GLY PRO LEU VAL GLU THR VAL SEQRES 25 B 314 PRO ALA HET FE A 401 1 HET AKG A 402 10 HET 6CS A 403 11 HET FE B 401 1 HET AKG B 402 10 HET 6CS B 403 11 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM 6CS (4S,5S)-5-HYDROXY-2-METHYL-1,4,5,6- HETNAM 2 6CS TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID FORMUL 3 FE 2(FE 3+) FORMUL 4 AKG 2(C5 H6 O5) FORMUL 5 6CS 2(C6 H10 N2 O3) FORMUL 9 HOH *29(H2 O) HELIX 1 1 SER A 34 GLY A 45 1 12 HELIX 2 2 SER A 54 ASP A 71 1 18 HELIX 3 3 GLU A 94 SER A 99 1 6 HELIX 4 4 SER A 99 ALA A 106 1 8 HELIX 5 5 ASP A 108 GLY A 120 1 13 HELIX 6 6 SER A 145 GLU A 153 1 9 HELIX 7 7 GLY A 183 HIS A 185 5 3 HELIX 8 8 ASP A 213 GLY A 225 1 13 HELIX 9 9 SER A 267 ARG A 269 5 3 HELIX 10 10 SER B 34 GLY B 45 1 12 HELIX 11 11 SER B 54 ASP B 71 1 18 HELIX 12 12 ASP B 76 ASP B 78 5 3 HELIX 13 13 SER B 99 ALA B 107 1 9 HELIX 14 14 ASP B 108 GLY B 120 1 13 HELIX 15 15 ASP B 146 GLU B 153 1 8 HELIX 16 16 GLY B 183 HIS B 185 5 3 HELIX 17 17 ASP B 213 GLY B 225 1 13 HELIX 18 18 SER B 267 ARG B 269 5 3 SHEET 1 A 2 MET A 15 PRO A 17 0 SHEET 2 A 2 THR A 187 LEU A 189 -1 O TYR A 188 N ARG A 16 SHEET 1 B 7 TYR A 46 LEU A 49 0 SHEET 2 B 7 VAL A 236 ASP A 240 -1 O LEU A 238 N ILE A 47 SHEET 3 B 7 ALA A 161 LEU A 167 -1 N SER A 163 O PHE A 239 SHEET 4 B 7 ARG A 256 ALA A 265 -1 O LEU A 261 N MET A 164 SHEET 5 B 7 VAL A 123 LYS A 133 -1 N LYS A 133 O ARG A 256 SHEET 6 B 7 ILE A 89 PHE A 93 -1 N ARG A 90 O TYR A 132 SHEET 7 B 7 ILE A 80 THR A 82 -1 N VAL A 81 O ARG A 90 SHEET 1 C 3 PHE A 141 HIS A 144 0 SHEET 2 C 3 HIS A 245 SER A 247 -1 O SER A 247 N PHE A 141 SHEET 3 C 3 MET A 179 VAL A 180 -1 N MET A 179 O GLY A 246 SHEET 1 D 2 MET B 15 PRO B 17 0 SHEET 2 D 2 THR B 187 LEU B 189 -1 O TYR B 188 N ARG B 16 SHEET 1 E 5 TYR B 46 LEU B 49 0 SHEET 2 E 5 VAL B 236 ASP B 240 -1 O VAL B 236 N LEU B 49 SHEET 3 E 5 ALA B 161 LEU B 167 -1 N SER B 165 O ILE B 237 SHEET 4 E 5 ARG B 256 ALA B 265 -1 O TYR B 263 N LEU B 162 SHEET 5 E 5 VAL B 123 LYS B 133 -1 N ARG B 129 O PHE B 260 SHEET 1 F 2 ILE B 80 THR B 82 0 SHEET 2 F 2 ILE B 89 ILE B 92 -1 O ARG B 90 N VAL B 81 SHEET 1 G 3 PHE B 141 SER B 145 0 SHEET 2 G 3 MET B 244 SER B 247 -1 O SER B 247 N PHE B 141 SHEET 3 G 3 MET B 179 VAL B 180 -1 N MET B 179 O GLY B 246 LINK NE2 HIS A 144 FE FE A 401 1555 1555 2.38 LINK OD1 ASP A 146 FE FE A 401 1555 1555 2.35 LINK NE2 HIS A 245 FE FE A 401 1555 1555 2.35 LINK FE FE A 401 O5 AKG A 402 1555 1555 2.46 LINK FE FE A 401 OG1 6CS A 403 1555 1555 2.01 LINK NE2 HIS B 144 FE FE B 401 1555 1555 2.36 LINK OD1 ASP B 146 FE FE B 401 1555 1555 2.11 LINK OD2 ASP B 146 FE FE B 401 1555 1555 2.44 LINK NE2 HIS B 245 FE FE B 401 1555 1555 2.45 LINK FE FE B 401 O5 AKG B 402 1555 1555 2.14 LINK FE FE B 401 O2 AKG B 402 1555 1555 2.63 CISPEP 1 LYS A 278 PRO A 279 0 -3.77 CISPEP 2 ARG A 287 GLY A 288 0 1.17 CISPEP 3 LYS B 278 PRO B 279 0 -2.87 CISPEP 4 ARG B 287 GLY B 288 0 -11.22 SITE 1 AC1 5 HIS A 144 ASP A 146 HIS A 245 AKG A 402 SITE 2 AC1 5 6CS A 403 SITE 1 AC2 7 ASN A 131 LYS A 133 PHE A 141 HIS A 245 SITE 2 AC2 7 PHE A 260 FE A 401 HOH A 508 SITE 1 AC3 8 GLN A 127 ARG A 129 PHE A 141 HIS A 144 SITE 2 AC3 8 ASP A 146 ARG A 280 FE A 401 HOH A 508 SITE 1 AC4 5 HIS B 144 ASP B 146 HIS B 245 AKG B 402 SITE 2 AC4 5 6CS B 403 SITE 1 AC5 10 ARG B 129 ASN B 131 PHE B 141 HIS B 144 SITE 2 AC5 10 ASP B 146 HIS B 245 SER B 247 ARG B 256 SITE 3 AC5 10 PHE B 260 FE B 401 SITE 1 AC6 7 GLN B 127 ARG B 129 HIS B 144 ASP B 146 SITE 2 AC6 7 TRP B 150 ARG B 280 FE B 401 CRYST1 81.004 87.076 94.879 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010540 0.00000