HEADER ISOMERASE 18-APR-14 4Q60 TITLE CRYSTAL STRUCTURE OF A 4-HYDROXYPROLINE EPIMERASE FROM BURKHOLDERIA TITLE 2 MULTIVORANS ATCC 17616, TARGET EFI-506586, OPEN FORM, WITH BOUND TITLE 3 PYRROLE-2-CARBOXYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS; SOURCE 3 ORGANISM_TAXID: 395019; SOURCE 4 STRAIN: ATCC 17616; SOURCE 5 GENE: BMUL_4447; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PROLINE RACEMASE FAMILY, PROBABLE PROLINE RACEMASE, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.SOJITRA,M.STEAD, AUTHOR 2 E.WASHINGTON,A.S.GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH, AUTHOR 3 J.LOVE,R.D.SEIDEL,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 3 20-SEP-23 4Q60 1 REMARK SEQADV SSBOND REVDAT 2 24-JAN-18 4Q60 1 AUTHOR JRNL REVDAT 1 07-MAY-14 4Q60 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.SOJITRA,M.STEAD, JRNL AUTH 2 E.WASHINGTON,A.S.GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,J.A.GERLT,S.C.ALMO, JRNL AUTH 4 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF PROLINE RACEMASE BMUL_4447 FROM JRNL TITL 2 BURKHOLDERIA MULTIVORANS, TARGET EFI-506586 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.88000 REMARK 3 B22 (A**2) : -2.28000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4820 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4522 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6568 ; 1.161 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10364 ; 0.689 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 5.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;28.077 ;22.512 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;12.827 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;12.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 729 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5615 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1142 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2516 ; 8.664 ; 6.429 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2515 ; 8.665 ; 6.426 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3148 ; 8.277 ; 9.553 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3149 ; 8.276 ; 9.557 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2304 ;13.601 ; 7.635 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2305 ;13.598 ; 7.637 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3415 ;13.829 ;10.906 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5550 ;15.011 ;25.045 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5551 ;15.010 ;25.049 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3253 -5.3725 27.0563 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.1351 REMARK 3 T33: 0.0172 T12: 0.0282 REMARK 3 T13: 0.0435 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.9518 L22: 0.3387 REMARK 3 L33: 1.8266 L12: 0.3367 REMARK 3 L13: 1.0896 L23: 0.3613 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.2490 S13: 0.0684 REMARK 3 S21: -0.1870 S22: 0.0074 S23: -0.0134 REMARK 3 S31: -0.1732 S32: 0.2870 S33: 0.0241 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6111 10.1088 3.9813 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1817 REMARK 3 T33: 0.0539 T12: -0.0107 REMARK 3 T13: -0.0235 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 0.2123 L22: 1.0547 REMARK 3 L33: 3.0703 L12: 0.0261 REMARK 3 L13: -0.3335 L23: -0.7750 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.1836 S13: 0.0831 REMARK 3 S21: 0.1709 S22: 0.0718 S23: -0.1101 REMARK 3 S31: -0.3686 S32: 0.2943 S33: -0.0848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58519 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4K7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM TRIS, 150 MM NACL, 5% REMARK 280 GLYCEROL, 5 MM DTT); RESERVOIR (0.1 M IMIDAZOLE:HCL, PH 8.0, 1 M REMARK 280 AMMONIUM PHOSPHATE DIBASIC (MCSG3 A4), CRYOPROTECTION: REMARK 280 (RESERVOIR), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.37450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.13750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.52650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.13750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.37450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.52650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 VAL A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 ALA A 231 REMARK 465 TYR A 232 REMARK 465 ASP A 233 REMARK 465 SER A 311 REMARK 465 MET B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 GLY B -11 REMARK 465 VAL B -10 REMARK 465 ASP B -9 REMARK 465 LEU B -8 REMARK 465 GLY B -7 REMARK 465 THR B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B 230 REMARK 465 ALA B 231 REMARK 465 TYR B 232 REMARK 465 ASP B 233 REMARK 465 SER B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 SER A 235 OG REMARK 470 ARG B 234 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 237 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 151 -45.72 -130.88 REMARK 500 ASP B 170 58.59 -91.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYC B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-506586 RELATED DB: TARGETTRACK DBREF 4Q60 A 2 311 UNP B3D6W2 B3D6W2_BURM1 2 311 DBREF 4Q60 B 2 311 UNP B3D6W2 B3D6W2_BURM1 2 311 SEQADV 4Q60 MET A -20 UNP B3D6W2 INITIATING METHIONINE SEQADV 4Q60 HIS A -19 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS A -18 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS A -17 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS A -16 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS A -15 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS A -14 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 SER A -13 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 SER A -12 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLY A -11 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 VAL A -10 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 ASP A -9 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 LEU A -8 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLY A -7 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 THR A -6 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLU A -5 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 ASN A -4 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 LEU A -3 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 TYR A -2 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 PHE A -1 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLN A 0 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 SER A 1 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 MET B -20 UNP B3D6W2 INITIATING METHIONINE SEQADV 4Q60 HIS B -19 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS B -18 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS B -17 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS B -16 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS B -15 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 HIS B -14 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 SER B -13 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 SER B -12 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLY B -11 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 VAL B -10 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 ASP B -9 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 LEU B -8 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLY B -7 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 THR B -6 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLU B -5 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 ASN B -4 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 LEU B -3 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 TYR B -2 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 PHE B -1 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 GLN B 0 UNP B3D6W2 EXPRESSION TAG SEQADV 4Q60 SER B 1 UNP B3D6W2 EXPRESSION TAG SEQRES 1 A 332 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 332 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS ARG ILE SEQRES 3 A 332 GLN ILE ILE ASP SER HIS THR GLY GLY GLU PRO THR ARG SEQRES 4 A 332 LEU VAL VAL SER GLY PHE PRO SER LEU GLY SER GLY THR SEQRES 5 A 332 MET ALA GLU ARG ARG ASP VAL LEU ALA ARG GLU TYR ASP SEQRES 6 A 332 ARG TYR ARG THR ALA CYS ILE LEU GLU PRO ARG GLY SER SEQRES 7 A 332 ASP VAL LEU VAL GLY ALA LEU LEU CYS GLU PRO VAL SER SEQRES 8 A 332 PRO ASP ALA ALA ALA GLY VAL ILE PHE PHE ASN ASN SER SEQRES 9 A 332 GLY TYR LEU GLY MET CYS GLY HIS GLY THR ILE GLY VAL SEQRES 10 A 332 VAL ARG THR LEU HIS HIS MET GLY ARG ILE GLY PRO GLY SEQRES 11 A 332 VAL HIS ARG ILE GLU THR PRO VAL GLY THR VAL GLU ALA SEQRES 12 A 332 THR LEU HIS ASP ASP LEU SER VAL SER VAL ARG ASN VAL SEQRES 13 A 332 LEU ALA TYR ARG HIS ALA LYS ASP VAL ALA LEU ASP VAL SEQRES 14 A 332 PRO GLY TYR GLY PRO VAL ARG GLY ASP ILE ALA TRP GLY SEQRES 15 A 332 GLY ASN TRP PHE PHE LEU ILE SER ASP HIS GLY GLN ARG SEQRES 16 A 332 VAL ALA GLY ASP ASN VAL ALA ALA LEU THR ALA TYR ALA SEQRES 17 A 332 SER ALA VAL ARG GLU GLY LEU GLU ARG ALA GLY ILE THR SEQRES 18 A 332 GLY ALA ASN GLY GLY GLU ILE ASP HIS ILE GLU LEU PHE SEQRES 19 A 332 ALA ASP ASP PRO GLU HIS ASP SER ARG SER PHE VAL LEU SEQRES 20 A 332 CYS PRO GLY LEU ALA TYR ASP ARG SER PRO CYS GLY THR SEQRES 21 A 332 GLY THR SER ALA LYS LEU ALA CYS LEU ALA ALA ASP GLY SEQRES 22 A 332 LYS LEU ALA PRO GLY ALA VAL TRP ARG GLN ALA SER VAL SEQRES 23 A 332 ILE GLY SER VAL PHE HIS ALA SER TYR VAL GLN ALA GLU SEQRES 24 A 332 GLY GLY ILE VAL PRO THR ILE ARG GLY SER ALA HIS LEU SEQRES 25 A 332 SER ALA GLU ALA THR LEU LEU ILE GLU ASP ASP ASP PRO SEQRES 26 A 332 PHE ARG TRP GLY ILE VAL SER SEQRES 1 B 332 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 332 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS ARG ILE SEQRES 3 B 332 GLN ILE ILE ASP SER HIS THR GLY GLY GLU PRO THR ARG SEQRES 4 B 332 LEU VAL VAL SER GLY PHE PRO SER LEU GLY SER GLY THR SEQRES 5 B 332 MET ALA GLU ARG ARG ASP VAL LEU ALA ARG GLU TYR ASP SEQRES 6 B 332 ARG TYR ARG THR ALA CYS ILE LEU GLU PRO ARG GLY SER SEQRES 7 B 332 ASP VAL LEU VAL GLY ALA LEU LEU CYS GLU PRO VAL SER SEQRES 8 B 332 PRO ASP ALA ALA ALA GLY VAL ILE PHE PHE ASN ASN SER SEQRES 9 B 332 GLY TYR LEU GLY MET CYS GLY HIS GLY THR ILE GLY VAL SEQRES 10 B 332 VAL ARG THR LEU HIS HIS MET GLY ARG ILE GLY PRO GLY SEQRES 11 B 332 VAL HIS ARG ILE GLU THR PRO VAL GLY THR VAL GLU ALA SEQRES 12 B 332 THR LEU HIS ASP ASP LEU SER VAL SER VAL ARG ASN VAL SEQRES 13 B 332 LEU ALA TYR ARG HIS ALA LYS ASP VAL ALA LEU ASP VAL SEQRES 14 B 332 PRO GLY TYR GLY PRO VAL ARG GLY ASP ILE ALA TRP GLY SEQRES 15 B 332 GLY ASN TRP PHE PHE LEU ILE SER ASP HIS GLY GLN ARG SEQRES 16 B 332 VAL ALA GLY ASP ASN VAL ALA ALA LEU THR ALA TYR ALA SEQRES 17 B 332 SER ALA VAL ARG GLU GLY LEU GLU ARG ALA GLY ILE THR SEQRES 18 B 332 GLY ALA ASN GLY GLY GLU ILE ASP HIS ILE GLU LEU PHE SEQRES 19 B 332 ALA ASP ASP PRO GLU HIS ASP SER ARG SER PHE VAL LEU SEQRES 20 B 332 CYS PRO GLY LEU ALA TYR ASP ARG SER PRO CYS GLY THR SEQRES 21 B 332 GLY THR SER ALA LYS LEU ALA CYS LEU ALA ALA ASP GLY SEQRES 22 B 332 LYS LEU ALA PRO GLY ALA VAL TRP ARG GLN ALA SER VAL SEQRES 23 B 332 ILE GLY SER VAL PHE HIS ALA SER TYR VAL GLN ALA GLU SEQRES 24 B 332 GLY GLY ILE VAL PRO THR ILE ARG GLY SER ALA HIS LEU SEQRES 25 B 332 SER ALA GLU ALA THR LEU LEU ILE GLU ASP ASP ASP PRO SEQRES 26 B 332 PHE ARG TRP GLY ILE VAL SER HET GOL A 401 6 HET PYC A 402 8 HET PYC B 401 8 HETNAM GOL GLYCEROL HETNAM PYC PYRROLE-2-CARBOXYLATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 PYC 2(C5 H4 N O2 1-) FORMUL 6 HOH *450(H2 O) HELIX 1 1 TYR A -2 GLN A 0 5 3 HELIX 2 2 THR A 31 TYR A 43 1 13 HELIX 3 3 TYR A 43 LEU A 52 1 10 HELIX 4 4 CYS A 89 MET A 103 1 15 HELIX 5 5 ALA A 176 ASP A 178 5 3 HELIX 6 6 ASN A 179 GLY A 198 1 20 HELIX 7 7 GLY A 201 GLY A 205 5 5 HELIX 8 8 GLY A 240 ASP A 251 1 12 HELIX 9 9 TYR B -2 GLN B 0 5 3 HELIX 10 10 THR B 31 TYR B 43 1 13 HELIX 11 11 TYR B 43 LEU B 52 1 10 HELIX 12 12 CYS B 89 MET B 103 1 15 HELIX 13 13 ALA B 176 ASP B 178 5 3 HELIX 14 14 ASN B 179 GLY B 198 1 20 HELIX 15 15 GLY B 201 GLY B 205 5 5 HELIX 16 16 GLY B 240 ASP B 251 1 12 SHEET 1 A32 TYR A 138 VAL A 148 0 SHEET 2 A32 GLY A 152 TRP A 160 -1 O GLY A 156 N VAL A 144 SHEET 3 A32 TRP A 164 ILE A 168 -1 O PHE A 165 N ALA A 159 SHEET 4 A32 HIS A 209 ALA A 214 1 O GLU A 211 N ILE A 168 SHEET 5 A32 SER A 221 LEU A 226 -1 O PHE A 224 N LEU A 212 SHEET 6 A32 TRP A 260 SER A 264 1 O ALA A 263 N SER A 223 SHEET 7 A32 VAL A 269 ALA A 277 -1 O PHE A 270 N GLN A 262 SHEET 8 A32 GLY A 280 GLY A 287 -1 O ARG A 286 N HIS A 271 SHEET 9 A32 VAL A 130 ARG A 133 -1 N VAL A 130 O GLY A 287 SHEET 10 A32 VAL A 120 LEU A 124 -1 N THR A 123 O SER A 131 SHEET 11 A32 GLY A 109 GLU A 114 -1 N ILE A 113 O VAL A 120 SHEET 12 A32 ALA A 75 PHE A 80 1 N ALA A 75 O GLU A 114 SHEET 13 A32 VAL A 61 CYS A 66 -1 N CYS A 66 O GLY A 76 SHEET 14 A32 GLU A 15 SER A 22 1 N VAL A 20 O ALA A 63 SHEET 15 A32 MET A 2 THR A 12 -1 N ILE A 8 O LEU A 19 SHEET 16 A32 ALA A 289 GLU A 300 -1 O LEU A 297 N ILE A 5 SHEET 17 A32 ALA B 289 GLU B 300 -1 O THR B 296 N GLU A 294 SHEET 18 A32 MET B 2 THR B 12 -1 N ILE B 5 O LEU B 297 SHEET 19 A32 GLU B 15 SER B 22 -1 O LEU B 19 N ILE B 8 SHEET 20 A32 VAL B 61 CYS B 66 1 O ALA B 63 N VAL B 20 SHEET 21 A32 ALA B 75 PHE B 80 -1 O PHE B 80 N GLY B 62 SHEET 22 A32 GLY B 109 THR B 115 1 O GLU B 114 N ALA B 75 SHEET 23 A32 GLY B 118 LEU B 124 -1 O LEU B 124 N GLY B 109 SHEET 24 A32 VAL B 130 ARG B 133 -1 O SER B 131 N THR B 123 SHEET 25 A32 GLY B 280 GLY B 287 -1 O GLY B 287 N VAL B 130 SHEET 26 A32 VAL B 269 ALA B 277 -1 N HIS B 271 O ARG B 286 SHEET 27 A32 TRP B 260 SER B 264 -1 N GLN B 262 O PHE B 270 SHEET 28 A32 SER B 221 LEU B 226 1 N SER B 221 O ALA B 263 SHEET 29 A32 HIS B 209 ALA B 214 -1 N ILE B 210 O LEU B 226 SHEET 30 A32 TRP B 164 ILE B 168 1 N PHE B 166 O GLU B 211 SHEET 31 A32 GLY B 152 TRP B 160 -1 N ALA B 159 O PHE B 165 SHEET 32 A32 TYR B 138 VAL B 148 -1 N VAL B 144 O GLY B 156 SSBOND 1 CYS A 227 CYS A 237 1555 1555 2.03 SSBOND 2 CYS B 227 CYS B 237 1555 1555 2.04 CISPEP 1 GLU A 53 PRO A 54 0 2.11 CISPEP 2 GLU B 53 PRO B 54 0 4.83 SITE 1 AC1 8 ARG A 18 ARG A 55 LEU A 297 HOH A 573 SITE 2 AC1 8 HOH A 578 ARG B 18 ARG B 55 LEU B 297 SITE 1 AC2 10 GLY A 90 HIS A 91 VAL A 132 ASN A 134 SITE 2 AC2 10 THR A 239 GLY A 240 THR A 241 SER A 242 SITE 3 AC2 10 ILE A 285 HOH A 725 SITE 1 AC3 6 GLY B 90 ASN B 134 THR B 239 GLY B 240 SITE 2 AC3 6 THR B 241 SER B 242 CRYST1 82.749 95.053 126.275 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007919 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.140361 0.990098 -0.002206 -24.21546 1 MTRIX2 2 0.989950 0.140378 0.017105 20.39641 1 MTRIX3 2 0.017245 0.000217 -0.999851 31.54377 1