HEADER OXIDOREDUCTASE 23-APR-14 4Q72 TITLE CRYSTAL STRUCTURE OF BRADYRHIZOBIUM JAPONICUM PROLINE UTILIZATION A TITLE 2 (PUTA) MUTANT D779Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.99.8, 1.2.1.88; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA 110; SOURCE 5 GENE: BJ6T_21270, BLR7261, PUTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS PROLINE UTILIZATION A, PUTA, BETA-ALPHA BARREL, ROSSMANN FOLD, KEYWDS 2 PROLINE DEHYDROGENASE, 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, FAD KEYWDS 3 BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,T.A.PEMBERTON,M.LUO REVDAT 3 20-SEP-23 4Q72 1 REMARK SEQADV REVDAT 2 10-SEP-14 4Q72 1 JRNL REVDAT 1 06-AUG-14 4Q72 0 JRNL AUTH B.W.ARENTSON,M.LUO,T.A.PEMBERTON,J.J.TANNER,D.F.BECKER JRNL TITL KINETIC AND STRUCTURAL CHARACTERIZATION OF TUNNEL-PERTURBING JRNL TITL 2 MUTANTS IN BRADYRHIZOBIUM JAPONICUM PROLINE UTILIZATION A. JRNL REF BIOCHEMISTRY V. 53 5150 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25046425 JRNL DOI 10.1021/BI5007404 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 129985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 6542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9890 - 7.1211 0.99 4227 213 0.2059 0.1964 REMARK 3 2 7.1211 - 5.6625 1.00 4212 217 0.2095 0.2110 REMARK 3 3 5.6625 - 4.9497 1.00 4147 227 0.1859 0.2230 REMARK 3 4 4.9497 - 4.4985 0.99 4142 254 0.1660 0.1857 REMARK 3 5 4.4985 - 4.1768 0.99 4130 231 0.1652 0.1979 REMARK 3 6 4.1768 - 3.9310 0.99 4147 217 0.1779 0.2033 REMARK 3 7 3.9310 - 3.7344 0.99 4128 226 0.1847 0.2217 REMARK 3 8 3.7344 - 3.5721 0.99 4152 214 0.1970 0.2530 REMARK 3 9 3.5721 - 3.4348 0.99 4118 223 0.2160 0.2523 REMARK 3 10 3.4348 - 3.3164 0.99 4155 210 0.2187 0.2485 REMARK 3 11 3.3164 - 3.2128 0.99 4108 207 0.2323 0.2640 REMARK 3 12 3.2128 - 3.1210 0.99 4107 231 0.2263 0.2554 REMARK 3 13 3.1210 - 3.0389 0.99 4140 228 0.2391 0.2904 REMARK 3 14 3.0389 - 2.9648 0.99 4144 209 0.2457 0.3215 REMARK 3 15 2.9648 - 2.8975 0.99 4111 196 0.2431 0.3007 REMARK 3 16 2.8975 - 2.8358 0.98 4085 229 0.2498 0.2864 REMARK 3 17 2.8358 - 2.7791 0.99 4071 229 0.2482 0.2944 REMARK 3 18 2.7791 - 2.7267 0.98 4091 232 0.2471 0.3013 REMARK 3 19 2.7267 - 2.6781 0.98 4100 208 0.2568 0.3047 REMARK 3 20 2.6781 - 2.6327 0.98 4095 198 0.2647 0.3089 REMARK 3 21 2.6327 - 2.5902 0.98 4109 182 0.2587 0.2974 REMARK 3 22 2.5902 - 2.5504 0.98 4112 201 0.2558 0.3505 REMARK 3 23 2.5504 - 2.5129 0.98 4076 219 0.2590 0.3026 REMARK 3 24 2.5129 - 2.4775 0.98 4076 213 0.2726 0.3321 REMARK 3 25 2.4775 - 2.4441 0.98 4094 225 0.2697 0.3946 REMARK 3 26 2.4441 - 2.4123 0.98 4020 235 0.2635 0.3112 REMARK 3 27 2.4123 - 2.3822 0.98 4088 201 0.2636 0.3318 REMARK 3 28 2.3822 - 2.3535 0.98 4113 238 0.2558 0.3291 REMARK 3 29 2.3535 - 2.3261 0.98 4058 209 0.2733 0.3230 REMARK 3 30 2.3261 - 2.3000 0.98 4087 220 0.2731 0.3667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 14823 REMARK 3 ANGLE : 1.107 20191 REMARK 3 CHIRALITY : 0.064 2330 REMARK 3 PLANARITY : 0.006 2646 REMARK 3 DIHEDRAL : 14.063 5364 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000085685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.088 REMARK 200 RESOLUTION RANGE LOW (A) : 115.296 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3HAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.55500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 97.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.55500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 97.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 134000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -268.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 56.69851 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -92.74141 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 LEU A 123 REMARK 465 GLY A 124 REMARK 465 LEU A 125 REMARK 465 SER A 126 REMARK 465 ALA A 127 REMARK 465 ARG A 183 REMARK 465 SER A 184 REMARK 465 THR A 536 REMARK 465 GLY A 537 REMARK 465 ASP A 538 REMARK 465 LEU A 539 REMARK 465 LYS A 540 REMARK 465 PRO A 541 REMARK 465 GLY A 990 REMARK 465 ASN A 991 REMARK 465 ALA A 992 REMARK 465 ALA A 993 REMARK 465 LEU A 994 REMARK 465 LEU A 995 REMARK 465 ALA A 996 REMARK 465 GLY A 997 REMARK 465 GLU A 998 REMARK 465 GLU A 999 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 51 REMARK 465 ASP B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 LEU B 123 REMARK 465 GLY B 124 REMARK 465 LEU B 125 REMARK 465 SER B 126 REMARK 465 ALA B 127 REMARK 465 ARG B 183 REMARK 465 SER B 184 REMARK 465 GLY B 185 REMARK 465 GLN B 186 REMARK 465 THR B 536 REMARK 465 GLY B 537 REMARK 465 ASP B 538 REMARK 465 LEU B 539 REMARK 465 LYS B 540 REMARK 465 PRO B 541 REMARK 465 GLY B 990 REMARK 465 ASN B 991 REMARK 465 ALA B 992 REMARK 465 ALA B 993 REMARK 465 LEU B 994 REMARK 465 LEU B 995 REMARK 465 ALA B 996 REMARK 465 GLY B 997 REMARK 465 GLU B 998 REMARK 465 GLU B 999 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ARG A 330 NE CZ NH1 NH2 REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 515 NE CZ NH1 NH2 REMARK 470 LYS A 533 CG CD CE NZ REMARK 470 ARG A 558 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 596 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 688 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 715 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 736 CG CD OE1 OE2 REMARK 470 GLU A 758 CG CD OE1 OE2 REMARK 470 GLU A 810 CG CD OE1 OE2 REMARK 470 GLU A 838 CG CD OE1 OE2 REMARK 470 GLN A 841 CG CD OE1 NE2 REMARK 470 ARG A 849 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 855 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 864 CG CD OE1 OE2 REMARK 470 ARG A 896 CD NE CZ NH1 NH2 REMARK 470 GLU A 898 CD OE1 OE2 REMARK 470 ARG A 902 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 909 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 93 CG CD OE1 NE2 REMARK 470 TRP B 121 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 121 CZ3 CH2 REMARK 470 GLN B 131 CG CD OE1 NE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ARG B 161 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 221 CD CE NZ REMARK 470 LYS B 302 CG CD CE NZ REMARK 470 LYS B 335 NZ REMARK 470 SER B 410 OG REMARK 470 GLU B 460 CG CD OE1 OE2 REMARK 470 GLN B 493 CG CD OE1 NE2 REMARK 470 ARG B 499 CD NE CZ NH1 NH2 REMARK 470 GLU B 510 CG CD OE1 OE2 REMARK 470 ARG B 512 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 533 CG CD CE NZ REMARK 470 ARG B 596 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 603 CG OD1 OD2 REMARK 470 ARG B 688 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 715 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 736 CG CD OE1 OE2 REMARK 470 GLU B 758 CG CD OE1 OE2 REMARK 470 GLU B 810 CG CD OE1 OE2 REMARK 470 ASP B 826 CG OD1 OD2 REMARK 470 GLU B 838 CG CD OE1 OE2 REMARK 470 GLN B 841 CG CD OE1 NE2 REMARK 470 ARG B 849 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 855 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 864 CG CD OE1 OE2 REMARK 470 ARG B 896 NE CZ NH1 NH2 REMARK 470 GLU B 898 CD OE1 OE2 REMARK 470 ARG B 902 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 905 NE CZ NH1 NH2 REMARK 470 ARG B 909 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 934 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 9 40.43 -151.04 REMARK 500 GLN A 186 -162.28 -125.28 REMARK 500 ASP A 230 48.35 -90.60 REMARK 500 GLU A 280 -143.18 -117.20 REMARK 500 GLU A 408 -0.59 63.45 REMARK 500 VAL A 490 -56.62 71.70 REMARK 500 THR A 759 -167.54 -120.19 REMARK 500 GLN A 790 47.43 -94.70 REMARK 500 LEU A 914 -80.78 -86.17 REMARK 500 THR B 9 42.48 -148.82 REMARK 500 ASP B 230 48.81 -88.83 REMARK 500 GLU B 280 -143.51 -116.37 REMARK 500 GLU B 408 -1.42 61.04 REMARK 500 VAL B 490 -54.82 72.51 REMARK 500 THR B 759 -166.55 -119.13 REMARK 500 GLN B 790 49.68 -94.28 REMARK 500 ASN B 899 32.51 -99.00 REMARK 500 LEU B 914 -83.16 -88.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q71 RELATED DB: PDB REMARK 900 4Q71 4Q72 4Q73 REMARK 900 RELATED ID: 4Q73 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 IT APPEARS THAT B. JAPONICUM STRAIN USDA 110 HAS BEEN RECLASSIFIED REMARK 999 AS BRADYRHIZOBIUM DIAZOEFFICIENS. SEE ALSO INT J SYST EVOL REMARK REMARK 999 999 MICROBIOL. 2013 SEP;63(PT 9):3342-51. DOI: 10.1099/IJS.0.049130- REMARK 999 0.EPUB 2013 MAR 15. POLYPHASIC EVIDENCE SUPPORTING THE REMARK 999 RECLASSIFICATION OF BRADYRHIZOBIUM JAPONICUM GROUP IA STRAINS AS REMARK 999 BRADYRHIZOBIUM DIAZOEFFICIENS SP. NOV. PMID: 23504968 DBREF 4Q72 A 1 999 UNP Q89E26 Q89E26_BRADU 1 999 DBREF 4Q72 B 1 999 UNP Q89E26 Q89E26_BRADU 1 999 SEQADV 4Q72 GLY A -1 UNP Q89E26 EXPRESSION TAG SEQADV 4Q72 HIS A 0 UNP Q89E26 EXPRESSION TAG SEQADV 4Q72 TYR A 779 UNP Q89E26 ASP 779 ENGINEERED MUTATION SEQADV 4Q72 GLY B -1 UNP Q89E26 EXPRESSION TAG SEQADV 4Q72 HIS B 0 UNP Q89E26 EXPRESSION TAG SEQADV 4Q72 TYR B 779 UNP Q89E26 ASP 779 ENGINEERED MUTATION SEQRES 1 A 1001 GLY HIS MET PRO ASN ILE PRO PRO PRO PHE THR ALA PRO SEQRES 2 A 1001 TYR ALA PRO ASP ASP ALA GLU ILE ALA ALA ARG LEU LEU SEQRES 3 A 1001 PRO ALA SER HIS LEU SER PRO PRO GLN GLU ALA ARG ILE SEQRES 4 A 1001 HIS ARG THR ALA THR ARG LEU ILE GLU ALA ILE ARG LYS SEQRES 5 A 1001 ARG ASP ASP ARG LEU GLY GLY VAL GLU ASP MET LEU ARG SEQRES 6 A 1001 GLU PHE ALA LEU SER THR LYS GLU GLY LEU ALA LEU MET SEQRES 7 A 1001 VAL LEU ALA GLU ALA LEU LEU ARG VAL PRO ASP ALA ARG SEQRES 8 A 1001 THR ALA ASP GLN PHE ILE GLU ASP LYS LEU GLY GLU GLY SEQRES 9 A 1001 ASP PHE ILE HIS HIS GLU THR LYS SER THR ALA PHE LEU SEQRES 10 A 1001 VAL ASN ALA SER ALA TRP ALA LEU GLY LEU SER ALA ARG SEQRES 11 A 1001 VAL ILE GLN PRO GLY GLU THR PRO ASP GLY THR ILE GLY SEQRES 12 A 1001 ARG LEU VAL LYS ARG LEU GLY ALA PRO ALA VAL ARG THR SEQRES 13 A 1001 ALA THR ARG GLN ALA MET ARG LEU MET GLY ASN HIS PHE SEQRES 14 A 1001 VAL LEU GLY GLU THR ILE GLU GLN ALA LEU GLU ARG GLY SEQRES 15 A 1001 LYS PRO ARG SER GLY GLN LYS THR ARG TYR SER PHE ASP SEQRES 16 A 1001 MET LEU GLY GLU GLY ALA ARG THR ALA ALA ASP ALA ARG SEQRES 17 A 1001 ARG TYR PHE ASP ALA TYR ALA SER ALA ILE GLU THR ILE SEQRES 18 A 1001 GLY LYS ALA ALA GLY ASN HIS ALA LEU PRO ASP ARG PRO SEQRES 19 A 1001 GLY ILE SER VAL LYS LEU SER ALA LEU HIS PRO ARG PHE SEQRES 20 A 1001 GLU ALA ILE SER ARG ALA ARG VAL MET VAL GLU LEU VAL SEQRES 21 A 1001 PRO GLN LEU LEU ASP LEU ALA GLN ARG ALA LYS ALA HIS SEQRES 22 A 1001 ASP LEU ASN PHE THR VAL ASP ALA GLU GLU ALA ASP ARG SEQRES 23 A 1001 LEU GLU LEU SER LEU ASP VAL ILE ALA ALA THR LEU ALA SEQRES 24 A 1001 ASP PRO SER LEU LYS GLY TRP ASP GLY PHE GLY LEU ALA SEQRES 25 A 1001 ILE GLN ALA TYR GLN LYS ARG ALA SER ALA VAL ILE ASP SEQRES 26 A 1001 TYR VAL ASP ALA LEU ALA ARG ALA HIS ASP ARG LYS LEU SEQRES 27 A 1001 MET VAL ARG LEU VAL LYS GLY ALA TYR TRP ASP THR GLU SEQRES 28 A 1001 ILE LYS ARG ALA GLN GLU ARG GLY LEU ASP GLY TYR PRO SEQRES 29 A 1001 VAL PHE THR ARG LYS ALA MET THR ASP LEU ASN TYR VAL SEQRES 30 A 1001 ALA CYS ALA SER LYS LEU LEU ALA LEU ARG PRO ARG ILE SEQRES 31 A 1001 PHE PRO GLN PHE ALA THR HIS ASN ALA LEU THR VAL ALA SEQRES 32 A 1001 THR VAL LEU GLU MET ALA GLU GLY SER SER GLY PHE GLU SEQRES 33 A 1001 PHE GLN ARG LEU HIS GLY MET GLY GLU ALA LEU TYR GLU SEQRES 34 A 1001 GLN LEU ALA LYS ASP HIS ALA ASP ILE ALA TYR ARG THR SEQRES 35 A 1001 TYR ALA PRO VAL GLY SER HIS ARG ASP LEU LEU ALA TYR SEQRES 36 A 1001 LEU VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN SER SER SEQRES 37 A 1001 PHE VAL ALA GLN ALA ALA ASP TYR ARG VAL PRO VAL PRO SEQRES 38 A 1001 ALA LEU LEU GLN ARG PRO ALA ASP ALA ILE VAL ARG PRO SEQRES 39 A 1001 GLN ALA ALA ALA HIS PRO ARG ILE PRO LEU PRO CYS ASP SEQRES 40 A 1001 LEU PHE ALA PRO GLU ARG ARG ASN SER ARG GLY VAL GLU SEQRES 41 A 1001 PHE GLY ALA ARG THR ALA LEU ASP GLN LEU LEU THR ASP SEQRES 42 A 1001 VAL LYS ALA GLU THR GLY ASP LEU LYS PRO ILE ALA ASP SEQRES 43 A 1001 ALA THR PRO ASP GLN ALA HIS ALA ALA VAL ALA ALA ALA SEQRES 44 A 1001 ARG ALA GLY PHE ALA GLY TRP SER ARG THR PRO ALA GLY SEQRES 45 A 1001 ILE ARG ALA ALA ALA LEU GLU GLN ALA ALA HIS LEU LEU SEQRES 46 A 1001 GLU SER ARG SER ALA HIS PHE ILE ALA LEU LEU GLN ARG SEQRES 47 A 1001 GLU GLY GLY LYS THR LEU ASP ASP ALA LEU SER GLU LEU SEQRES 48 A 1001 ARG GLU ALA ALA ASP PHE CYS ARG TYR TYR ALA ALA GLN SEQRES 49 A 1001 GLY ARG LYS LEU PHE GLY SER GLU THR ALA MET PRO GLY SEQRES 50 A 1001 PRO THR GLY GLU SER ASN ALA LEU THR MET ARG GLY ARG SEQRES 51 A 1001 GLY VAL PHE VAL ALA ILE SER PRO TRP ASN PHE PRO LEU SEQRES 52 A 1001 ALA ILE PHE LEU GLY GLN VAL THR ALA ALA LEU MET ALA SEQRES 53 A 1001 GLY ASN SER VAL VAL ALA LYS PRO ALA GLU GLN THR PRO SEQRES 54 A 1001 ARG ILE ALA ARG GLU ALA VAL ALA LEU LEU HIS GLU ALA SEQRES 55 A 1001 GLY ILE PRO LYS SER ALA LEU TYR LEU VAL THR GLY ASP SEQRES 56 A 1001 GLY ARG ILE GLY ALA ALA LEU THR ALA HIS PRO ASP ILE SEQRES 57 A 1001 ALA GLY VAL VAL PHE THR GLY SER THR GLU VAL ALA ARG SEQRES 58 A 1001 SER ILE ASN ARG ALA LEU ALA ALA LYS ASP GLY PRO ILE SEQRES 59 A 1001 VAL PRO LEU ILE ALA GLU THR GLY GLY ILE ASN ALA MET SEQRES 60 A 1001 ILE ALA ASP ALA THR ALA LEU PRO GLU GLN VAL ALA ASP SEQRES 61 A 1001 TYR VAL VAL THR SER ALA PHE ARG SER ALA GLY GLN ARG SEQRES 62 A 1001 CYS SER ALA LEU ARG LEU LEU PHE VAL GLN GLU ASP VAL SEQRES 63 A 1001 ALA ASP ARG MET ILE GLU MET VAL ALA GLY ALA ALA ARG SEQRES 64 A 1001 GLU LEU LYS ILE GLY ASP PRO SER ASP VAL ALA THR HIS SEQRES 65 A 1001 VAL GLY PRO VAL ILE ASP VAL GLU ALA LYS GLN ARG LEU SEQRES 66 A 1001 ASP ALA HIS ILE ALA ARG MET LYS THR GLU ALA ARG LEU SEQRES 67 A 1001 HIS PHE ALA GLY PRO ALA PRO GLU GLY CYS PHE VAL ALA SEQRES 68 A 1001 PRO HIS ILE PHE GLU LEU THR GLU ALA GLY GLN LEU THR SEQRES 69 A 1001 GLU GLU VAL PHE GLY PRO ILE LEU HIS VAL VAL ARG TYR SEQRES 70 A 1001 ARG PRO GLU ASN LEU GLU ARG VAL LEU ARG ALA ILE GLU SEQRES 71 A 1001 ARG THR GLY TYR GLY LEU THR LEU GLY VAL HIS SER ARG SEQRES 72 A 1001 ILE ASP ASP SER ILE GLU ALA ILE ILE ASP ARG VAL GLN SEQRES 73 A 1001 VAL GLY ASN ILE TYR VAL ASN ARG ASN MET ILE GLY ALA SEQRES 74 A 1001 VAL VAL GLY VAL GLN PRO PHE GLY GLY ASN GLY LEU SER SEQRES 75 A 1001 GLY THR GLY PRO LYS ALA GLY GLY PRO HIS TYR LEU ALA SEQRES 76 A 1001 ARG PHE ALA THR GLU GLN THR VAL THR ILE ASN THR ALA SEQRES 77 A 1001 ALA ALA GLY GLY ASN ALA ALA LEU LEU ALA GLY GLU GLU SEQRES 1 B 1001 GLY HIS MET PRO ASN ILE PRO PRO PRO PHE THR ALA PRO SEQRES 2 B 1001 TYR ALA PRO ASP ASP ALA GLU ILE ALA ALA ARG LEU LEU SEQRES 3 B 1001 PRO ALA SER HIS LEU SER PRO PRO GLN GLU ALA ARG ILE SEQRES 4 B 1001 HIS ARG THR ALA THR ARG LEU ILE GLU ALA ILE ARG LYS SEQRES 5 B 1001 ARG ASP ASP ARG LEU GLY GLY VAL GLU ASP MET LEU ARG SEQRES 6 B 1001 GLU PHE ALA LEU SER THR LYS GLU GLY LEU ALA LEU MET SEQRES 7 B 1001 VAL LEU ALA GLU ALA LEU LEU ARG VAL PRO ASP ALA ARG SEQRES 8 B 1001 THR ALA ASP GLN PHE ILE GLU ASP LYS LEU GLY GLU GLY SEQRES 9 B 1001 ASP PHE ILE HIS HIS GLU THR LYS SER THR ALA PHE LEU SEQRES 10 B 1001 VAL ASN ALA SER ALA TRP ALA LEU GLY LEU SER ALA ARG SEQRES 11 B 1001 VAL ILE GLN PRO GLY GLU THR PRO ASP GLY THR ILE GLY SEQRES 12 B 1001 ARG LEU VAL LYS ARG LEU GLY ALA PRO ALA VAL ARG THR SEQRES 13 B 1001 ALA THR ARG GLN ALA MET ARG LEU MET GLY ASN HIS PHE SEQRES 14 B 1001 VAL LEU GLY GLU THR ILE GLU GLN ALA LEU GLU ARG GLY SEQRES 15 B 1001 LYS PRO ARG SER GLY GLN LYS THR ARG TYR SER PHE ASP SEQRES 16 B 1001 MET LEU GLY GLU GLY ALA ARG THR ALA ALA ASP ALA ARG SEQRES 17 B 1001 ARG TYR PHE ASP ALA TYR ALA SER ALA ILE GLU THR ILE SEQRES 18 B 1001 GLY LYS ALA ALA GLY ASN HIS ALA LEU PRO ASP ARG PRO SEQRES 19 B 1001 GLY ILE SER VAL LYS LEU SER ALA LEU HIS PRO ARG PHE SEQRES 20 B 1001 GLU ALA ILE SER ARG ALA ARG VAL MET VAL GLU LEU VAL SEQRES 21 B 1001 PRO GLN LEU LEU ASP LEU ALA GLN ARG ALA LYS ALA HIS SEQRES 22 B 1001 ASP LEU ASN PHE THR VAL ASP ALA GLU GLU ALA ASP ARG SEQRES 23 B 1001 LEU GLU LEU SER LEU ASP VAL ILE ALA ALA THR LEU ALA SEQRES 24 B 1001 ASP PRO SER LEU LYS GLY TRP ASP GLY PHE GLY LEU ALA SEQRES 25 B 1001 ILE GLN ALA TYR GLN LYS ARG ALA SER ALA VAL ILE ASP SEQRES 26 B 1001 TYR VAL ASP ALA LEU ALA ARG ALA HIS ASP ARG LYS LEU SEQRES 27 B 1001 MET VAL ARG LEU VAL LYS GLY ALA TYR TRP ASP THR GLU SEQRES 28 B 1001 ILE LYS ARG ALA GLN GLU ARG GLY LEU ASP GLY TYR PRO SEQRES 29 B 1001 VAL PHE THR ARG LYS ALA MET THR ASP LEU ASN TYR VAL SEQRES 30 B 1001 ALA CYS ALA SER LYS LEU LEU ALA LEU ARG PRO ARG ILE SEQRES 31 B 1001 PHE PRO GLN PHE ALA THR HIS ASN ALA LEU THR VAL ALA SEQRES 32 B 1001 THR VAL LEU GLU MET ALA GLU GLY SER SER GLY PHE GLU SEQRES 33 B 1001 PHE GLN ARG LEU HIS GLY MET GLY GLU ALA LEU TYR GLU SEQRES 34 B 1001 GLN LEU ALA LYS ASP HIS ALA ASP ILE ALA TYR ARG THR SEQRES 35 B 1001 TYR ALA PRO VAL GLY SER HIS ARG ASP LEU LEU ALA TYR SEQRES 36 B 1001 LEU VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN SER SER SEQRES 37 B 1001 PHE VAL ALA GLN ALA ALA ASP TYR ARG VAL PRO VAL PRO SEQRES 38 B 1001 ALA LEU LEU GLN ARG PRO ALA ASP ALA ILE VAL ARG PRO SEQRES 39 B 1001 GLN ALA ALA ALA HIS PRO ARG ILE PRO LEU PRO CYS ASP SEQRES 40 B 1001 LEU PHE ALA PRO GLU ARG ARG ASN SER ARG GLY VAL GLU SEQRES 41 B 1001 PHE GLY ALA ARG THR ALA LEU ASP GLN LEU LEU THR ASP SEQRES 42 B 1001 VAL LYS ALA GLU THR GLY ASP LEU LYS PRO ILE ALA ASP SEQRES 43 B 1001 ALA THR PRO ASP GLN ALA HIS ALA ALA VAL ALA ALA ALA SEQRES 44 B 1001 ARG ALA GLY PHE ALA GLY TRP SER ARG THR PRO ALA GLY SEQRES 45 B 1001 ILE ARG ALA ALA ALA LEU GLU GLN ALA ALA HIS LEU LEU SEQRES 46 B 1001 GLU SER ARG SER ALA HIS PHE ILE ALA LEU LEU GLN ARG SEQRES 47 B 1001 GLU GLY GLY LYS THR LEU ASP ASP ALA LEU SER GLU LEU SEQRES 48 B 1001 ARG GLU ALA ALA ASP PHE CYS ARG TYR TYR ALA ALA GLN SEQRES 49 B 1001 GLY ARG LYS LEU PHE GLY SER GLU THR ALA MET PRO GLY SEQRES 50 B 1001 PRO THR GLY GLU SER ASN ALA LEU THR MET ARG GLY ARG SEQRES 51 B 1001 GLY VAL PHE VAL ALA ILE SER PRO TRP ASN PHE PRO LEU SEQRES 52 B 1001 ALA ILE PHE LEU GLY GLN VAL THR ALA ALA LEU MET ALA SEQRES 53 B 1001 GLY ASN SER VAL VAL ALA LYS PRO ALA GLU GLN THR PRO SEQRES 54 B 1001 ARG ILE ALA ARG GLU ALA VAL ALA LEU LEU HIS GLU ALA SEQRES 55 B 1001 GLY ILE PRO LYS SER ALA LEU TYR LEU VAL THR GLY ASP SEQRES 56 B 1001 GLY ARG ILE GLY ALA ALA LEU THR ALA HIS PRO ASP ILE SEQRES 57 B 1001 ALA GLY VAL VAL PHE THR GLY SER THR GLU VAL ALA ARG SEQRES 58 B 1001 SER ILE ASN ARG ALA LEU ALA ALA LYS ASP GLY PRO ILE SEQRES 59 B 1001 VAL PRO LEU ILE ALA GLU THR GLY GLY ILE ASN ALA MET SEQRES 60 B 1001 ILE ALA ASP ALA THR ALA LEU PRO GLU GLN VAL ALA ASP SEQRES 61 B 1001 TYR VAL VAL THR SER ALA PHE ARG SER ALA GLY GLN ARG SEQRES 62 B 1001 CYS SER ALA LEU ARG LEU LEU PHE VAL GLN GLU ASP VAL SEQRES 63 B 1001 ALA ASP ARG MET ILE GLU MET VAL ALA GLY ALA ALA ARG SEQRES 64 B 1001 GLU LEU LYS ILE GLY ASP PRO SER ASP VAL ALA THR HIS SEQRES 65 B 1001 VAL GLY PRO VAL ILE ASP VAL GLU ALA LYS GLN ARG LEU SEQRES 66 B 1001 ASP ALA HIS ILE ALA ARG MET LYS THR GLU ALA ARG LEU SEQRES 67 B 1001 HIS PHE ALA GLY PRO ALA PRO GLU GLY CYS PHE VAL ALA SEQRES 68 B 1001 PRO HIS ILE PHE GLU LEU THR GLU ALA GLY GLN LEU THR SEQRES 69 B 1001 GLU GLU VAL PHE GLY PRO ILE LEU HIS VAL VAL ARG TYR SEQRES 70 B 1001 ARG PRO GLU ASN LEU GLU ARG VAL LEU ARG ALA ILE GLU SEQRES 71 B 1001 ARG THR GLY TYR GLY LEU THR LEU GLY VAL HIS SER ARG SEQRES 72 B 1001 ILE ASP ASP SER ILE GLU ALA ILE ILE ASP ARG VAL GLN SEQRES 73 B 1001 VAL GLY ASN ILE TYR VAL ASN ARG ASN MET ILE GLY ALA SEQRES 74 B 1001 VAL VAL GLY VAL GLN PRO PHE GLY GLY ASN GLY LEU SER SEQRES 75 B 1001 GLY THR GLY PRO LYS ALA GLY GLY PRO HIS TYR LEU ALA SEQRES 76 B 1001 ARG PHE ALA THR GLU GLN THR VAL THR ILE ASN THR ALA SEQRES 77 B 1001 ALA ALA GLY GLY ASN ALA ALA LEU LEU ALA GLY GLU GLU HET FAD A2001 53 HET GOL A2002 6 HET GOL A2003 6 HET GOL A2004 6 HET SO4 A2005 5 HET SO4 A2006 5 HET SO4 A2007 5 HET FAD B1001 53 HET SO4 B1002 5 HET SO4 B1003 5 HET SO4 B1004 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 SO4 6(O4 S 2-) FORMUL 14 HOH *296(H2 O) HELIX 1 1 ASP A 15 SER A 27 1 13 HELIX 2 2 SER A 30 ARG A 49 1 20 HELIX 3 3 GLY A 57 ALA A 66 1 10 HELIX 4 4 SER A 68 ARG A 84 1 17 HELIX 5 5 ASP A 87 LYS A 98 1 12 HELIX 6 6 ASP A 103 LEU A 115 1 13 HELIX 7 7 VAL A 116 TRP A 121 5 6 HELIX 8 8 ASP A 137 GLY A 148 1 12 HELIX 9 9 GLY A 148 PHE A 167 1 20 HELIX 10 10 THR A 172 GLY A 180 1 9 HELIX 11 11 THR A 201 ALA A 222 1 22 HELIX 12 12 LYS A 237 LEU A 241 5 5 HELIX 13 13 GLU A 246 ILE A 248 5 3 HELIX 14 14 SER A 249 ALA A 270 1 22 HELIX 15 15 GLU A 281 ASP A 283 5 3 HELIX 16 16 ARG A 284 ALA A 297 1 14 HELIX 17 17 ASP A 298 LYS A 302 5 5 HELIX 18 18 ARG A 317 HIS A 332 1 16 HELIX 19 19 TYR A 345 ARG A 356 1 12 HELIX 20 20 ARG A 366 ALA A 383 1 18 HELIX 21 21 ASN A 396 GLU A 408 1 13 HELIX 22 22 GLY A 422 HIS A 433 1 12 HELIX 23 23 ASP A 449 ALA A 463 1 15 HELIX 24 24 SER A 466 ALA A 472 1 7 HELIX 25 25 PRO A 477 LEU A 482 1 6 HELIX 26 26 ARG A 484 VAL A 490 1 7 HELIX 27 27 ARG A 491 ALA A 495 5 5 HELIX 28 28 LEU A 502 LEU A 506 5 5 HELIX 29 29 ALA A 521 ALA A 534 1 14 HELIX 30 30 THR A 546 THR A 567 1 22 HELIX 31 31 PRO A 568 ARG A 586 1 19 HELIX 32 32 ARG A 586 GLU A 597 1 12 HELIX 33 33 THR A 601 GLY A 628 1 28 HELIX 34 34 LEU A 661 ALA A 674 1 14 HELIX 35 35 THR A 686 GLY A 701 1 16 HELIX 36 36 ASP A 713 HIS A 723 1 11 HELIX 37 37 SER A 734 LYS A 748 1 15 HELIX 38 38 LEU A 772 ARG A 786 1 15 HELIX 39 39 SER A 787 GLN A 790 5 4 HELIX 40 40 GLU A 802 GLU A 818 1 17 HELIX 41 41 ASP A 836 ALA A 854 1 19 HELIX 42 42 GLU A 877 LEU A 881 5 5 HELIX 43 43 ARG A 896 GLU A 898 5 3 HELIX 44 44 ASN A 899 THR A 910 1 12 HELIX 45 45 ILE A 922 VAL A 933 1 12 HELIX 46 46 ASN A 957 GLY A 961 5 5 HELIX 47 47 TYR A 971 ARG A 974 5 4 HELIX 48 48 ASP B 15 SER B 27 1 13 HELIX 49 49 SER B 30 ARG B 49 1 20 HELIX 50 50 GLY B 57 PHE B 65 1 9 HELIX 51 51 SER B 68 ARG B 84 1 17 HELIX 52 52 ASP B 87 LYS B 98 1 12 HELIX 53 53 ASP B 103 PHE B 114 1 12 HELIX 54 54 LEU B 115 VAL B 116 5 2 HELIX 55 55 ASN B 117 TRP B 121 5 5 HELIX 56 56 ASP B 137 GLY B 148 1 12 HELIX 57 57 GLY B 148 PHE B 167 1 20 HELIX 58 58 THR B 172 GLY B 180 1 9 HELIX 59 59 THR B 201 ALA B 222 1 22 HELIX 60 60 LYS B 237 LEU B 241 5 5 HELIX 61 61 GLU B 246 ILE B 248 5 3 HELIX 62 62 SER B 249 ALA B 270 1 22 HELIX 63 63 GLU B 281 ASP B 283 5 3 HELIX 64 64 ARG B 284 ASP B 298 1 15 HELIX 65 65 PRO B 299 LYS B 302 5 4 HELIX 66 66 ARG B 317 ASP B 333 1 17 HELIX 67 67 TYR B 345 ARG B 356 1 12 HELIX 68 68 ARG B 366 ALA B 383 1 18 HELIX 69 69 ASN B 396 GLU B 408 1 13 HELIX 70 70 GLY B 422 HIS B 433 1 12 HELIX 71 71 ASP B 449 ALA B 463 1 15 HELIX 72 72 SER B 466 ALA B 472 1 7 HELIX 73 73 PRO B 477 LEU B 482 1 6 HELIX 74 74 ARG B 484 VAL B 490 1 7 HELIX 75 75 ARG B 491 ALA B 495 5 5 HELIX 76 76 LEU B 502 LEU B 506 5 5 HELIX 77 77 ALA B 521 ALA B 534 1 14 HELIX 78 78 THR B 546 THR B 567 1 22 HELIX 79 79 PRO B 568 ARG B 586 1 19 HELIX 80 80 ARG B 586 GLU B 597 1 12 HELIX 81 81 THR B 601 GLY B 628 1 28 HELIX 82 82 LEU B 661 ALA B 674 1 14 HELIX 83 83 THR B 686 GLY B 701 1 16 HELIX 84 84 PRO B 703 SER B 705 5 3 HELIX 85 85 ASP B 713 HIS B 723 1 11 HELIX 86 86 SER B 734 LYS B 748 1 15 HELIX 87 87 LEU B 772 ARG B 786 1 15 HELIX 88 88 SER B 787 GLN B 790 5 4 HELIX 89 89 GLU B 802 GLU B 818 1 17 HELIX 90 90 ASP B 836 ALA B 854 1 19 HELIX 91 91 GLU B 877 LEU B 881 5 5 HELIX 92 92 ARG B 896 GLU B 898 5 3 HELIX 93 93 ASN B 899 THR B 910 1 12 HELIX 94 94 ILE B 922 VAL B 933 1 12 HELIX 95 95 ASN B 957 GLY B 961 5 5 HELIX 96 96 TYR B 971 ARG B 974 5 4 SHEET 1 A10 VAL A 168 GLY A 170 0 SHEET 2 A10 TYR A 438 SER A 446 1 O PRO A 443 N VAL A 168 SHEET 3 A10 GLU A 414 LEU A 418 1 N PHE A 415 O ARG A 439 SHEET 4 A10 ILE A 388 ALA A 393 1 N PHE A 392 O GLU A 414 SHEET 5 A10 LEU A 336 VAL A 341 1 N LEU A 340 O GLN A 391 SHEET 6 A10 PHE A 307 GLN A 312 1 N ILE A 311 O ARG A 339 SHEET 7 A10 ASN A 274 VAL A 277 1 N VAL A 277 O ALA A 310 SHEET 8 A10 GLY A 233 VAL A 236 1 N VAL A 236 O THR A 276 SHEET 9 A10 SER A 191 MET A 194 1 N PHE A 192 O GLY A 233 SHEET 10 A10 TYR A 438 SER A 446 1 O ALA A 442 N SER A 191 SHEET 1 B10 THR A 631 ALA A 632 0 SHEET 2 B10 GLU A 639 GLY A 647 -1 O LEU A 643 N THR A 631 SHEET 3 B10 ALA A 976 ASN A 984 -1 O THR A 977 N ARG A 646 SHEET 4 B10 ASN B 937 VAL B 940 1 O VAL B 940 N THR A 982 SHEET 5 B10 THR B 915 HIS B 919 1 N LEU B 916 O TYR B 939 SHEET 6 B10 ASN B 763 ALA B 767 1 N ILE B 766 O HIS B 919 SHEET 7 B10 LEU B 795 GLN B 801 1 O PHE B 799 N MET B 765 SHEET 8 B10 ILE B 889 TYR B 895 1 O HIS B 891 N LEU B 798 SHEET 9 B10 HIS B 871 GLU B 874 1 N HIS B 871 O LEU B 890 SHEET 10 B10 ARG B 855 ALA B 859 -1 N ARG B 855 O GLU B 874 SHEET 1 C 5 LEU A 707 LEU A 709 0 SHEET 2 C 5 SER A 677 LYS A 681 1 N ALA A 680 O TYR A 708 SHEET 3 C 5 VAL A 650 ILE A 654 1 N PHE A 651 O SER A 677 SHEET 4 C 5 GLY A 728 THR A 732 1 O VAL A 730 N ILE A 654 SHEET 5 C 5 LEU A 755 GLU A 758 1 O ILE A 756 N PHE A 731 SHEET 1 D10 ARG A 855 ALA A 859 0 SHEET 2 D10 HIS A 871 GLU A 874 -1 O GLU A 874 N ARG A 855 SHEET 3 D10 ILE A 889 TYR A 895 1 O LEU A 890 N HIS A 871 SHEET 4 D10 LEU A 795 GLN A 801 1 N LEU A 798 O VAL A 893 SHEET 5 D10 ASN A 763 ALA A 767 1 N MET A 765 O PHE A 799 SHEET 6 D10 THR A 915 HIS A 919 1 O HIS A 919 N ILE A 766 SHEET 7 D10 ASN A 937 VAL A 940 1 O TYR A 939 N LEU A 916 SHEET 8 D10 ALA B 976 ASN B 984 1 O THR B 982 N VAL A 940 SHEET 9 D10 GLU B 639 GLY B 647 -1 N ARG B 646 O THR B 977 SHEET 10 D10 THR B 631 ALA B 632 -1 N THR B 631 O LEU B 643 SHEET 1 E10 VAL B 168 GLY B 170 0 SHEET 2 E10 TYR B 438 SER B 446 1 O PRO B 443 N VAL B 168 SHEET 3 E10 GLU B 414 LEU B 418 1 N PHE B 415 O ARG B 439 SHEET 4 E10 ILE B 388 ALA B 393 1 N PHE B 392 O GLU B 414 SHEET 5 E10 LEU B 336 VAL B 341 1 N LEU B 340 O GLN B 391 SHEET 6 E10 PHE B 307 GLN B 312 1 N ILE B 311 O VAL B 341 SHEET 7 E10 ASN B 274 VAL B 277 1 N VAL B 277 O GLY B 308 SHEET 8 E10 GLY B 233 VAL B 236 1 N VAL B 236 O THR B 276 SHEET 9 E10 SER B 191 MET B 194 1 N PHE B 192 O GLY B 233 SHEET 10 E10 TYR B 438 SER B 446 1 O ALA B 442 N ASP B 193 SHEET 1 F 5 LEU B 707 LEU B 709 0 SHEET 2 F 5 SER B 677 LYS B 681 1 N ALA B 680 O TYR B 708 SHEET 3 F 5 VAL B 650 ILE B 654 1 N ALA B 653 O LYS B 681 SHEET 4 F 5 ILE B 726 THR B 732 1 O ALA B 727 N VAL B 650 SHEET 5 F 5 LEU B 755 GLU B 758 1 O ILE B 756 N PHE B 731 CISPEP 1 LEU A 228 PRO A 229 0 13.67 CISPEP 2 ARG A 385 PRO A 386 0 4.17 CISPEP 3 ALA A 508 PRO A 509 0 3.65 CISPEP 4 GLY A 963 PRO A 964 0 -6.05 CISPEP 5 LEU B 228 PRO B 229 0 8.69 CISPEP 6 ARG B 385 PRO B 386 0 4.50 CISPEP 7 ALA B 508 PRO B 509 0 6.36 CISPEP 8 GLY B 963 PRO B 964 0 -4.99 SITE 1 AC1 27 ASP A 278 ALA A 279 ALA A 310 GLN A 312 SITE 2 AC1 27 TYR A 314 ARG A 339 VAL A 341 LYS A 342 SITE 3 AC1 27 GLY A 343 ALA A 344 TYR A 345 TRP A 346 SITE 4 AC1 27 PHE A 364 THR A 365 ARG A 366 LYS A 367 SITE 5 AC1 27 THR A 370 ALA A 393 THR A 394 HIS A 395 SITE 6 AC1 27 ASN A 396 TYR A 441 SER A 466 PHE A 467 SITE 7 AC1 27 HOH A2120 HOH A2149 HOH A2190 SITE 1 AC2 3 SER A 30 PRO A 32 ARG A 36 SITE 1 AC3 7 GLU A 256 ALA A 297 PRO A 299 LYS A 302 SITE 2 AC3 7 HIS A 332 ARG A 334 HOH A2283 SITE 1 AC4 5 ASP A 359 VAL A 517 GLU A 518 ALA A 524 SITE 2 AC4 5 HOH A2239 SITE 1 AC5 1 ARG A 475 SITE 1 AC6 4 ARG A 366 LYS A 367 ALA A 368 HOH A2124 SITE 1 AC7 6 ARG A 791 SER A 793 ILE A 945 GLY A 946 SITE 2 AC7 6 ALA A 947 HOH A2152 SITE 1 AC8 24 ASP B 278 ALA B 279 ALA B 310 GLN B 312 SITE 2 AC8 24 TYR B 314 ARG B 339 VAL B 341 LYS B 342 SITE 3 AC8 24 GLY B 343 ALA B 344 TRP B 346 PHE B 364 SITE 4 AC8 24 THR B 365 ARG B 366 LYS B 367 THR B 370 SITE 5 AC8 24 ALA B 393 THR B 394 HIS B 395 ASN B 396 SITE 6 AC8 24 TYR B 441 SER B 466 PHE B 467 HOH B1131 SITE 1 AC9 6 PHE B 659 ARG B 791 SER B 793 ILE B 945 SITE 2 AC9 6 GLY B 946 ALA B 947 SITE 1 BC1 1 ARG B 475 SITE 1 BC2 4 ARG B 366 LYS B 367 ALA B 368 HOH B1145 CRYST1 167.110 195.990 108.700 90.00 121.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005984 0.000000 0.003658 0.00000 SCALE2 0.000000 0.005102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010783 0.00000