HEADER ISOMERASE 25-APR-14 4Q7I TITLE CRYSTAL STRUCTURE OF ENGINEERED THERMOSTABLE D-TAGATOSE 3-EPIMERASE TITLE 2 PCDTE-VAR8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-TAGATOSE 3-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: D-TAGATOSE 3-EPIMERASE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKTS-C6H KEYWDS EPIMERASE, TIM-BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.HEE,A.BOSSHART,T.SCHIRMER REVDAT 5 20-SEP-23 4Q7I 1 REMARK LINK REVDAT 4 18-MAR-15 4Q7I 1 JRNL REVDAT 3 18-FEB-15 4Q7I 1 JRNL REVDAT 2 29-OCT-14 4Q7I 1 REMARK REVDAT 1 22-OCT-14 4Q7I 0 JRNL AUTH A.BOSSHART,C.S.HEE,M.BECHTOLD,T.SCHIRMER,S.PANKE JRNL TITL DIRECTED DIVERGENT EVOLUTION OF A THERMOSTABLE D-TAGATOSE JRNL TITL 2 EPIMERASE TOWARDS IMPROVED ACTIVITY FOR TWO HEXOSE JRNL TITL 3 SUBSTRATES. JRNL REF CHEMBIOCHEM V. 16 592 2015 JRNL REFN ISSN 1439-4227 JRNL PMID 25655925 JRNL DOI 10.1002/CBIC.201402620 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 55465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4836 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4549 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6533 ; 1.484 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10469 ; 0.946 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 6.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;29.588 ;23.504 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;13.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;16.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5470 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1134 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 289 B 1 289 18320 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2014 12.4501 17.1503 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.1961 REMARK 3 T33: 0.1022 T12: -0.0189 REMARK 3 T13: -0.0174 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.9609 L22: 1.8644 REMARK 3 L33: 3.0236 L12: 0.1271 REMARK 3 L13: -0.3482 L23: 1.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 0.1258 S13: 0.0058 REMARK 3 S21: 0.0201 S22: -0.1638 S23: -0.2104 REMARK 3 S31: 0.0178 S32: -0.5327 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 290 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8945 22.5795 43.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.2967 REMARK 3 T33: 0.2075 T12: -0.1022 REMARK 3 T13: -0.0083 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 1.3320 L22: 0.6198 REMARK 3 L33: 4.7962 L12: 0.0631 REMARK 3 L13: 1.9379 L23: -0.4035 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: -0.2194 S13: -0.1595 REMARK 3 S21: -0.1398 S22: 0.2991 S23: 0.0810 REMARK 3 S31: -0.1782 S32: -0.2181 S33: -0.3611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Q7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 53.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 2QUL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 18% W/V PEG 8000, 0.2M REMARK 280 LITHIUM SULFATE, PH 7.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.23500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.23500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 291 REMARK 465 GLU B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 116 MN MN A 604 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 99 CB - CG - CD1 ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 160 -7.19 -149.65 REMARK 500 TRP B 160 -11.88 -147.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE2 REMARK 620 2 ASP A 185 OD2 92.8 REMARK 620 3 HIS A 211 ND1 98.1 111.2 REMARK 620 4 GLU A 246 OE1 175.7 83.2 82.1 REMARK 620 5 GOL A 602 O2 97.7 101.6 142.6 84.6 REMARK 620 6 GOL A 602 O1 85.6 158.7 90.0 98.7 57.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IMD A 605 N3 REMARK 620 2 HOH A 751 O 75.5 REMARK 620 3 HIS B 116 NE2 101.4 105.1 REMARK 620 4 HOH B 905 O 138.2 71.2 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 152 OE2 REMARK 620 2 ASP B 185 OD2 92.1 REMARK 620 3 HIS B 211 ND1 96.1 112.4 REMARK 620 4 GLU B 246 OE1 173.2 82.7 81.9 REMARK 620 5 GOL B 602 O2 97.6 100.9 143.4 87.8 REMARK 620 6 GOL B 602 O1 88.3 160.8 86.7 98.0 60.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 603 DBREF 4Q7I A 1 298 PDB 4Q7I 4Q7I 1 298 DBREF 4Q7I B 1 298 PDB 4Q7I 4Q7I 1 298 SEQRES 1 A 298 MET ASN LYS VAL GLY MET PHE TYR THR TYR TRP SER THR SEQRES 2 A 298 GLU TRP MET VAL ASP PHE PRO ALA THR ALA LYS ARG ILE SEQRES 3 A 298 ALA GLY LEU GLY PHE ASP LEU MET GLU ILE SER LEU GLY SEQRES 4 A 298 GLU PHE HIS ASN LEU SER ASP ALA LYS LYS ARG GLU LEU SEQRES 5 A 298 LYS ALA VAL ALA ASP ASP LEU GLY LEU THR VAL MET CYS SEQRES 6 A 298 CYS ILE GLY LEU LYS SER GLU TYR ASP PHE ALA SER PRO SEQRES 7 A 298 ASP LYS SER VAL ARG ASP ALA GLY THR GLU TYR VAL LYS SEQRES 8 A 298 ARG LEU LEU ASP ASP CYS HIS LEU LEU GLY ALA PRO VAL SEQRES 9 A 298 PHE ALA GLY LEU THR PHE CYS ALA TRP PRO GLN HIS PRO SEQRES 10 A 298 PRO LEU ASP MET VAL ASP LYS ARG PRO TYR VAL ASP ARG SEQRES 11 A 298 ALA ILE GLU SER VAL ARG ARG VAL ILE LYS VAL ALA GLU SEQRES 12 A 298 ASP TYR GLY ILE ILE TYR ALA LEU GLU VAL VAL ASN ARG SEQRES 13 A 298 TYR GLU GLN TRP LEU CYS ASN ASP ALA LYS GLU ALA ILE SEQRES 14 A 298 ALA PHE ALA ASP ALA VAL ASP SER PRO ALA CYS LYS VAL SEQRES 15 A 298 GLN LEU ASP THR PHE HIS MET ASN ILE GLU GLU ASN SER SEQRES 16 A 298 PHE ARG ASP ALA ILE LEU ALA CYS LYS GLY LYS MET GLY SEQRES 17 A 298 HIS PHE HIS LEU GLY GLU GLN ASN ARG LEU PRO PRO GLY SEQRES 18 A 298 GLU GLY ARG LEU PRO TRP ASP GLU ILE PHE GLY ALA LEU SEQRES 19 A 298 LYS GLU ILE GLY TYR ASP GLY THR ILE VAL MET GLU PRO SEQRES 20 A 298 PHE MET ARG THR GLY GLY SER VAL SER ARG ALA VAL CYS SEQRES 21 A 298 VAL TRP ARG ASP LEU SER ASN GLY ALA THR ASP GLU GLU SEQRES 22 A 298 MET ASP GLU ARG ALA ARG ARG SER LEU GLN PHE VAL ARG SEQRES 23 A 298 ASP LYS LEU ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 298 MET ASN LYS VAL GLY MET PHE TYR THR TYR TRP SER THR SEQRES 2 B 298 GLU TRP MET VAL ASP PHE PRO ALA THR ALA LYS ARG ILE SEQRES 3 B 298 ALA GLY LEU GLY PHE ASP LEU MET GLU ILE SER LEU GLY SEQRES 4 B 298 GLU PHE HIS ASN LEU SER ASP ALA LYS LYS ARG GLU LEU SEQRES 5 B 298 LYS ALA VAL ALA ASP ASP LEU GLY LEU THR VAL MET CYS SEQRES 6 B 298 CYS ILE GLY LEU LYS SER GLU TYR ASP PHE ALA SER PRO SEQRES 7 B 298 ASP LYS SER VAL ARG ASP ALA GLY THR GLU TYR VAL LYS SEQRES 8 B 298 ARG LEU LEU ASP ASP CYS HIS LEU LEU GLY ALA PRO VAL SEQRES 9 B 298 PHE ALA GLY LEU THR PHE CYS ALA TRP PRO GLN HIS PRO SEQRES 10 B 298 PRO LEU ASP MET VAL ASP LYS ARG PRO TYR VAL ASP ARG SEQRES 11 B 298 ALA ILE GLU SER VAL ARG ARG VAL ILE LYS VAL ALA GLU SEQRES 12 B 298 ASP TYR GLY ILE ILE TYR ALA LEU GLU VAL VAL ASN ARG SEQRES 13 B 298 TYR GLU GLN TRP LEU CYS ASN ASP ALA LYS GLU ALA ILE SEQRES 14 B 298 ALA PHE ALA ASP ALA VAL ASP SER PRO ALA CYS LYS VAL SEQRES 15 B 298 GLN LEU ASP THR PHE HIS MET ASN ILE GLU GLU ASN SER SEQRES 16 B 298 PHE ARG ASP ALA ILE LEU ALA CYS LYS GLY LYS MET GLY SEQRES 17 B 298 HIS PHE HIS LEU GLY GLU GLN ASN ARG LEU PRO PRO GLY SEQRES 18 B 298 GLU GLY ARG LEU PRO TRP ASP GLU ILE PHE GLY ALA LEU SEQRES 19 B 298 LYS GLU ILE GLY TYR ASP GLY THR ILE VAL MET GLU PRO SEQRES 20 B 298 PHE MET ARG THR GLY GLY SER VAL SER ARG ALA VAL CYS SEQRES 21 B 298 VAL TRP ARG ASP LEU SER ASN GLY ALA THR ASP GLU GLU SEQRES 22 B 298 MET ASP GLU ARG ALA ARG ARG SER LEU GLN PHE VAL ARG SEQRES 23 B 298 ASP LYS LEU ALA LEU GLU HIS HIS HIS HIS HIS HIS HET MN A 601 1 HET GOL A 602 6 HET GOL A 603 6 HET MN A 604 2 HET IMD A 605 5 HET MN A 606 1 HET MN B 601 1 HET GOL B 602 6 HET GOL B 603 6 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 4(MN 2+) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 IMD C3 H5 N2 1+ FORMUL 12 HOH *460(H2 O) HELIX 1 1 ASP A 18 LEU A 29 1 12 HELIX 2 2 LEU A 38 HIS A 42 1 5 HELIX 3 3 SER A 45 GLY A 60 1 16 HELIX 4 4 LYS A 70 ASP A 74 5 5 HELIX 5 5 ASP A 79 LEU A 100 1 22 HELIX 6 6 LYS A 124 GLY A 146 1 23 HELIX 7 7 ASP A 164 ASP A 176 1 13 HELIX 8 8 THR A 186 GLU A 193 1 8 HELIX 9 9 SER A 195 CYS A 203 1 9 HELIX 10 10 PRO A 226 ILE A 237 1 12 HELIX 11 11 GLY A 253 VAL A 259 1 7 HELIX 12 12 THR A 270 ALA A 290 1 21 HELIX 13 13 GLU A 292 HIS A 298 5 7 HELIX 14 14 ASP B 18 LEU B 29 1 12 HELIX 15 15 LEU B 38 HIS B 42 1 5 HELIX 16 16 SER B 45 GLY B 60 1 16 HELIX 17 17 LYS B 70 ASP B 74 5 5 HELIX 18 18 ASP B 79 GLY B 101 1 23 HELIX 19 19 LYS B 124 GLY B 146 1 23 HELIX 20 20 ASP B 164 ASP B 176 1 13 HELIX 21 21 THR B 186 GLU B 193 1 8 HELIX 22 22 SER B 195 CYS B 203 1 9 HELIX 23 23 PRO B 226 ILE B 237 1 12 HELIX 24 24 GLY B 253 VAL B 259 1 7 HELIX 25 25 THR B 270 ALA B 290 1 21 SHEET 1 A 9 VAL A 4 PHE A 7 0 SHEET 2 A 9 LEU A 33 SER A 37 1 O LEU A 33 N MET A 6 SHEET 3 A 9 THR A 62 LEU A 69 1 O MET A 64 N ILE A 36 SHEET 4 A 9 VAL A 104 ALA A 112 1 O ALA A 106 N CYS A 65 SHEET 5 A 9 ILE A 148 GLU A 152 1 O ILE A 148 N PHE A 105 SHEET 6 A 9 CYS A 180 ASP A 185 1 O LYS A 181 N LEU A 151 SHEET 7 A 9 MET A 207 LEU A 212 1 O GLY A 208 N VAL A 182 SHEET 8 A 9 ILE A 243 MET A 245 1 O VAL A 244 N LEU A 212 SHEET 9 A 9 VAL A 4 PHE A 7 1 N GLY A 5 O ILE A 243 SHEET 1 B 9 VAL B 4 PHE B 7 0 SHEET 2 B 9 LEU B 33 SER B 37 1 O GLU B 35 N MET B 6 SHEET 3 B 9 THR B 62 LEU B 69 1 O MET B 64 N ILE B 36 SHEET 4 B 9 VAL B 104 ALA B 112 1 O ALA B 106 N CYS B 65 SHEET 5 B 9 ILE B 148 GLU B 152 1 O ILE B 148 N PHE B 105 SHEET 6 B 9 CYS B 180 ASP B 185 1 O LYS B 181 N TYR B 149 SHEET 7 B 9 MET B 207 LEU B 212 1 O GLY B 208 N VAL B 182 SHEET 8 B 9 ILE B 243 MET B 245 1 O VAL B 244 N PHE B 210 SHEET 9 B 9 VAL B 4 PHE B 7 1 N GLY B 5 O ILE B 243 LINK NE2 HIS A 98 MN MN A 606 1555 1555 2.34 LINK OE2 GLU A 152 MN MN A 601 1555 1555 2.14 LINK OD2 ASP A 185 MN MN A 601 1555 1555 1.97 LINK ND1 HIS A 211 MN MN A 601 1555 1555 2.22 LINK OE1 GLU A 246 MN MN A 601 1555 1555 2.23 LINK MN MN A 601 O2 GOL A 602 1555 1555 2.28 LINK MN MN A 601 O1 GOL A 602 1555 1555 2.29 LINK MN A MN A 604 N3 IMD A 605 1555 1555 2.14 LINK MN B MN A 604 N3 IMD A 605 1555 1555 2.50 LINK MN B MN A 604 O BHOH A 751 1555 1555 2.38 LINK MN B MN A 604 NE2 HIS B 116 1555 1555 1.76 LINK MN B MN A 604 O HOH B 905 1555 1555 2.45 LINK OE2 GLU B 152 MN MN B 601 1555 1555 2.16 LINK OD2 ASP B 185 MN MN B 601 1555 1555 2.03 LINK ND1 HIS B 211 MN MN B 601 1555 1555 2.21 LINK OE1 GLU B 246 MN MN B 601 1555 1555 2.28 LINK MN MN B 601 O2 GOL B 602 1555 1555 2.01 LINK MN MN B 601 O1 GOL B 602 1555 1555 2.50 CISPEP 1 TRP A 113 PRO A 114 0 -13.27 CISPEP 2 TRP B 113 PRO B 114 0 -12.05 SITE 1 AC1 5 GLU A 152 ASP A 185 HIS A 211 GLU A 246 SITE 2 AC1 5 GOL A 602 SITE 1 AC2 10 TRP A 113 GLU A 152 GLU A 158 ASP A 185 SITE 2 AC2 10 HIS A 188 HIS A 211 ARG A 217 GLU A 246 SITE 3 AC2 10 MN A 601 HOH A 921 SITE 1 AC3 7 SER A 37 ILE A 67 GLY A 68 TRP A 113 SITE 2 AC3 7 HOH A 825 HOH A 856 HOH A 870 SITE 1 AC4 5 HIS A 116 IMD A 605 HOH A 751 HIS B 116 SITE 2 AC4 5 HOH B 905 SITE 1 AC5 4 HIS A 116 MN A 604 HOH A 751 HIS B 116 SITE 1 AC6 3 HIS A 98 HIS A 293 HIS A 297 SITE 1 AC7 5 GLU B 152 ASP B 185 HIS B 211 GLU B 246 SITE 2 AC7 5 GOL B 602 SITE 1 AC8 10 TRP B 113 GLU B 152 GLU B 158 ASP B 185 SITE 2 AC8 10 HIS B 188 HIS B 211 ARG B 217 GLU B 246 SITE 3 AC8 10 MN B 601 HOH B 874 SITE 1 AC9 6 SER B 37 ILE B 67 GLY B 68 TRP B 113 SITE 2 AC9 6 HOH B 855 HOH B 869 CRYST1 110.470 47.500 124.730 90.00 103.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009052 0.000000 0.002203 0.00000 SCALE2 0.000000 0.021053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008251 0.00000