HEADER LYASE 28-APR-14 4Q8K TITLE CRYSTAL STRUCTURE OF POLYSACCHARIDE LYASE FAMILY 18 ALY-SJ02 P-CATD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOALTEROMONAS; SOURCE 3 ORGANISM_TAXID: 515257; SOURCE 4 STRAIN: SM0524; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALGINATE LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DONG,C.Y.LI,Y.Z.ZHANG REVDAT 2 25-NOV-15 4Q8K 1 JRNL REVDAT 1 17-SEP-14 4Q8K 0 JRNL AUTH S.DONG,T.D.WEI,X.L.CHEN,C.Y.LI,P.WANG,B.B.XIE,Q.L.QIN, JRNL AUTH 2 X.Y.ZHANG,X.H.PANG,B.C.ZHOU,Y.Z.ZHANG JRNL TITL MOLECULAR INSIGHT INTO THE ROLE OF THE N-TERMINAL EXTENSION JRNL TITL 2 IN THE MATURATION, SUBSTRATE RECOGNITION, AND CATALYSIS OF A JRNL TITL 3 BACTERIAL ALGINATE LYASE FROM POLYSACCHARIDE LYASE FAMILY JRNL TITL 4 18. JRNL REF J.BIOL.CHEM. V. 289 29558 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25210041 JRNL DOI 10.1074/JBC.M114.584573 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 29196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6430 - 3.5457 0.71 2420 114 0.1942 0.2056 REMARK 3 2 3.5457 - 2.8147 0.98 3063 157 0.1948 0.2217 REMARK 3 3 2.8147 - 2.4590 0.99 2991 165 0.1968 0.2195 REMARK 3 4 2.4590 - 2.2342 0.82 2460 128 0.2006 0.2283 REMARK 3 5 2.2342 - 2.0741 0.90 2690 145 0.2023 0.2237 REMARK 3 6 2.0741 - 1.9518 0.99 2880 169 0.1930 0.2671 REMARK 3 7 1.9518 - 1.8541 0.91 2650 134 0.2463 0.2755 REMARK 3 8 1.8541 - 1.7733 0.98 2899 155 0.2387 0.2680 REMARK 3 9 1.7733 - 1.7051 0.98 2844 156 0.2332 0.2746 REMARK 3 10 1.7051 - 1.6462 0.97 2829 147 0.2569 0.2369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.98330 REMARK 3 B22 (A**2) : 4.98330 REMARK 3 B33 (A**2) : -9.96660 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1801 REMARK 3 ANGLE : 1.118 2445 REMARK 3 CHIRALITY : 0.075 271 REMARK 3 PLANARITY : 0.005 325 REMARK 3 DIHEDRAL : 14.753 641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.4431 13.5200 -14.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.2886 REMARK 3 T33: 0.1998 T12: 0.0272 REMARK 3 T13: 0.0022 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.6998 L22: 0.6496 REMARK 3 L33: 1.5205 L12: 0.0544 REMARK 3 L13: 0.0416 L23: 0.2558 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.1653 S13: 0.0270 REMARK 3 S21: -0.0224 S22: 0.0013 S23: -0.0128 REMARK 3 S31: -0.0156 S32: 0.0735 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Q8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB085739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.646 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES (PH 7.5), 25% (W/V) PEG REMARK 280 4000, 150MM AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.90867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 257.81733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 193.36300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 322.27167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.45433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.90867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 257.81733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 322.27167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 193.36300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.45433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 907 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 873 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 ILE A 34 REMARK 465 ASN A 35 REMARK 465 ASN A 36 REMARK 465 ALA A 37 REMARK 465 GLY A 38 REMARK 465 PHE A 39 REMARK 465 GLU A 40 REMARK 465 SER A 41 REMARK 465 GLY A 42 REMARK 465 PHE A 43 REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 TRP A 46 REMARK 465 ASN A 47 REMARK 465 GLU A 48 REMARK 465 THR A 49 REMARK 465 ASP A 50 REMARK 465 PRO A 51 REMARK 465 ALA A 52 REMARK 465 ALA A 53 REMARK 465 ILE A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 ASP A 57 REMARK 465 ALA A 58 REMARK 465 TYR A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 LYS A 63 REMARK 465 SER A 64 REMARK 465 LEU A 65 REMARK 465 LYS A 66 REMARK 465 ILE A 67 REMARK 465 GLN A 68 REMARK 465 GLY A 69 REMARK 465 SER A 70 REMARK 465 PRO A 71 REMARK 465 ALA A 72 REMARK 465 ARG A 73 REMARK 465 VAL A 74 REMARK 465 TYR A 75 REMARK 465 GLN A 76 REMARK 465 VAL A 77 REMARK 465 VAL A 78 REMARK 465 ASP A 79 REMARK 465 ILE A 80 REMARK 465 GLN A 81 REMARK 465 PRO A 82 REMARK 465 ASN A 83 REMARK 465 THR A 84 REMARK 465 GLU A 85 REMARK 465 TYR A 86 REMARK 465 THR A 87 REMARK 465 LEU A 88 REMARK 465 SER A 89 REMARK 465 ALA A 90 REMARK 465 TYR A 91 REMARK 465 VAL A 92 REMARK 465 LEU A 93 REMARK 465 GLY A 94 REMARK 465 LYS A 95 REMARK 465 GLY A 96 REMARK 465 GLN A 97 REMARK 465 ILE A 98 REMARK 465 GLY A 99 REMARK 465 VAL A 100 REMARK 465 ASN A 101 REMARK 465 ASP A 102 REMARK 465 LEU A 103 REMARK 465 ASN A 104 REMARK 465 GLY A 105 REMARK 465 LEU A 106 REMARK 465 PHE A 107 REMARK 465 LYS A 108 REMARK 465 ASN A 109 REMARK 465 GLN A 110 REMARK 465 THR A 111 REMARK 465 PHE A 112 REMARK 465 ASN A 113 REMARK 465 VAL A 114 REMARK 465 SER A 115 REMARK 465 SER A 116 REMARK 465 TRP A 117 REMARK 465 THR A 118 REMARK 465 LYS A 119 REMARK 465 VAL A 120 REMARK 465 THR A 121 REMARK 465 LYS A 122 REMARK 465 THR A 123 REMARK 465 PHE A 124 REMARK 465 THR A 125 REMARK 465 SER A 126 REMARK 465 ALA A 127 REMARK 465 ASN A 128 REMARK 465 THR A 129 REMARK 465 ASN A 130 REMARK 465 SER A 131 REMARK 465 LEU A 132 REMARK 465 GLN A 133 REMARK 465 VAL A 134 REMARK 465 PHE A 135 REMARK 465 ALA A 136 REMARK 465 LYS A 137 REMARK 465 HIS A 138 REMARK 465 TYR A 139 REMARK 465 ASN A 140 REMARK 465 ASN A 141 REMARK 465 THR A 142 REMARK 465 SER A 143 REMARK 465 ASP A 144 REMARK 465 VAL A 145 REMARK 465 ARG A 146 REMARK 465 PHE A 147 REMARK 465 ASP A 148 REMARK 465 ASN A 149 REMARK 465 PHE A 150 REMARK 465 SER A 151 REMARK 465 LEU A 152 REMARK 465 ILE A 153 REMARK 465 GLU A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 ASN A 159 REMARK 465 ASP A 160 REMARK 465 GLY A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 ASP A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 SER A 167 REMARK 465 ASP A 168 REMARK 465 ASN A 169 REMARK 465 SER A 170 REMARK 465 ASN A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 262 N GLY A 264 1.24 REMARK 500 O HOH A 841 O HOH A 842 1.96 REMARK 500 OG SER A 177 O HOH A 691 2.01 REMARK 500 O HOH A 721 O HOH A 819 2.02 REMARK 500 OD2 ASP A 326 O HOH A 780 2.02 REMARK 500 OE1 GLU A 341 O HOH A 843 2.03 REMARK 500 ND2 ASN A 216 O HOH A 909 2.04 REMARK 500 OE1 GLU A 207 O HOH A 796 2.08 REMARK 500 NH2 ARG A 319 O HOH A 687 2.09 REMARK 500 O HOH A 919 O HOH A 922 2.12 REMARK 500 O HOH A 844 O HOH A 888 2.19 REMARK 500 O HOH A 745 O HOH A 825 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 328 OE1 GLU A 328 10554 2.04 REMARK 500 O HOH A 877 O HOH A 879 10554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 262 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 262 -167.53 -78.62 REMARK 500 ASP A 273 56.34 -118.36 REMARK 500 ASP A 281 -68.33 -102.99 REMARK 500 SER A 386 90.33 -160.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 869 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 7.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 273 OD1 REMARK 620 2 VAL A 283 O 85.7 REMARK 620 3 ILE A 288 O 90.4 176.1 REMARK 620 4 ASN A 286 OD1 83.8 86.2 94.0 REMARK 620 5 ASP A 281 OD2 168.7 85.1 98.9 89.1 REMARK 620 6 HOH A 608 O 100.5 83.8 96.3 168.8 85.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q8L RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. DBREF 4Q8K A 32 406 PDB 4Q8K 4Q8K 32 406 SEQRES 1 A 375 ALA THR ILE ASN ASN ALA GLY PHE GLU SER GLY PHE SER SEQRES 2 A 375 ASN TRP ASN GLU THR ASP PRO ALA ALA ILE SER SER ASP SEQRES 3 A 375 ALA TYR SER GLY SER LYS SER LEU LYS ILE GLN GLY SER SEQRES 4 A 375 PRO ALA ARG VAL TYR GLN VAL VAL ASP ILE GLN PRO ASN SEQRES 5 A 375 THR GLU TYR THR LEU SER ALA TYR VAL LEU GLY LYS GLY SEQRES 6 A 375 GLN ILE GLY VAL ASN ASP LEU ASN GLY LEU PHE LYS ASN SEQRES 7 A 375 GLN THR PHE ASN VAL SER SER TRP THR LYS VAL THR LYS SEQRES 8 A 375 THR PHE THR SER ALA ASN THR ASN SER LEU GLN VAL PHE SEQRES 9 A 375 ALA LYS HIS TYR ASN ASN THR SER ASP VAL ARG PHE ASP SEQRES 10 A 375 ASN PHE SER LEU ILE GLU GLY SER GLY SER ASN ASP GLY SEQRES 11 A 375 GLY SER ASP GLY GLY SER ASP ASN SER ASN GLY SER THR SEQRES 12 A 375 ILE PRO SER SER ILE THR SER GLY SER ILE PHE ASP LEU SEQRES 13 A 375 GLU GLY ASP ASN PRO ASN PRO LEU VAL ASP ASP SER THR SEQRES 14 A 375 LEU VAL PHE VAL PRO LEU GLU ALA GLN HIS ILE THR PRO SEQRES 15 A 375 ASN GLY ASN GLY TRP ARG HIS GLU TYR LYS VAL LYS GLU SEQRES 16 A 375 SER LEU ARG VAL ALA MET THR GLN THR TYR GLU VAL PHE SEQRES 17 A 375 GLU ALA THR VAL LYS VAL GLU MET SER ASP GLY GLY LYS SEQRES 18 A 375 THR ILE ILE SER GLN HIS HIS ALA SER ASP THR GLY THR SEQRES 19 A 375 ILE SER LYS VAL TYR VAL SER ASP THR ASP GLU SER GLY SEQRES 20 A 375 PHE ASN ASP SER VAL ALA ASN ASN GLY ILE PHE ASP VAL SEQRES 21 A 375 TYR VAL ARG LEU ARG ASN THR SER GLY ASN GLU GLU LYS SEQRES 22 A 375 PHE ALA LEU GLY THR MET THR SER GLY GLU THR PHE ASN SEQRES 23 A 375 LEU ARG VAL VAL ASN ASN TYR GLY ASP VAL GLU VAL THR SEQRES 24 A 375 ALA PHE GLY ASN SER PHE GLY ILE PRO VAL GLU ASP ASP SEQRES 25 A 375 SER GLN SER TYR PHE LYS PHE GLY ASN TYR LEU GLN SER SEQRES 26 A 375 GLN ASP PRO TYR THR LEU ASP LYS CYS GLY GLU ALA GLY SEQRES 27 A 375 ASN SER ASN SER PHE LYS ASN CYS PHE GLU ASP LEU GLY SEQRES 28 A 375 ILE THR GLU SER LYS VAL THR MET THR ASN VAL SER TYR SEQRES 29 A 375 THR ARG GLU THR ASN HIS HIS HIS HIS HIS HIS HET CA A 501 1 HET SO4 A 502 5 HET SO4 A 503 5 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 2 CA CA 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *329(H2 O) HELIX 1 1 PRO A 176 SER A 181 1 6 HELIX 2 2 VAL A 204 GLN A 209 1 6 HELIX 3 3 GLU A 226 ARG A 229 5 4 HELIX 4 4 ALA A 231 THR A 233 5 3 HELIX 5 5 ASN A 370 LEU A 381 1 12 SHEET 1 A 7 PHE A 185 GLU A 188 0 SHEET 2 A 7 GLY A 217 VAL A 224 -1 O LYS A 223 N ASP A 186 SHEET 3 A 7 TYR A 347 GLN A 355 -1 O PHE A 350 N TYR A 222 SHEET 4 A 7 LYS A 252 HIS A 259 -1 N HIS A 259 O TYR A 347 SHEET 5 A 7 THR A 265 SER A 272 -1 O ILE A 266 N HIS A 258 SHEET 6 A 7 ILE A 288 ARG A 296 -1 O ASP A 290 N SER A 272 SHEET 7 A 7 GLU A 302 THR A 311 -1 O GLU A 303 N LEU A 295 SHEET 1 B 7 LEU A 195 ASP A 197 0 SHEET 2 B 7 THR A 200 PHE A 203 -1 O THR A 200 N ASP A 197 SHEET 3 B 7 SER A 386 THR A 399 -1 O VAL A 388 N PHE A 203 SHEET 4 B 7 THR A 235 MET A 247 -1 N GLU A 246 O LYS A 387 SHEET 5 B 7 THR A 315 ASN A 323 -1 O PHE A 316 N VAL A 243 SHEET 6 B 7 ASP A 326 ALA A 331 -1 O GLU A 328 N VAL A 321 SHEET 7 B 7 ASN A 334 PRO A 339 -1 O PHE A 336 N VAL A 329 SSBOND 1 CYS A 365 CYS A 377 1555 1555 2.04 LINK OD1 ASP A 273 CA CA A 501 1555 1555 2.37 LINK O VAL A 283 CA CA A 501 1555 1555 2.38 LINK O ILE A 288 CA CA A 501 1555 1555 2.39 LINK OD1 ASN A 286 CA CA A 501 1555 1555 2.42 LINK OD2 ASP A 281 CA CA A 501 1555 1555 2.47 LINK CA CA A 501 O HOH A 608 1555 1555 2.51 CISPEP 1 ASN A 191 PRO A 192 0 1.73 SITE 1 AC1 6 ASP A 273 ASP A 281 VAL A 283 ASN A 286 SITE 2 AC1 6 ILE A 288 HOH A 608 SITE 1 AC2 8 LYS A 252 TYR A 270 LYS A 364 HOH A 602 SITE 2 AC2 8 HOH A 656 HOH A 832 HOH A 906 HOH A 911 SITE 1 AC3 10 THR A 212 GLY A 215 ARG A 219 HIS A 259 SITE 2 AC3 10 HOH A 627 HOH A 637 HOH A 669 HOH A 708 SITE 3 AC3 10 HOH A 787 HOH A 856 CRYST1 46.361 46.361 386.726 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021570 0.012453 0.000000 0.00000 SCALE2 0.000000 0.024907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002586 0.00000