HEADER PEPTIDE BINDING PROTEIN 29-APR-14 4Q94 TITLE HUMAN RPRD1B CID IN COMPLEX WITH A RPB1-CTD DERIVED SER2 TITLE 2 PHOSPHORYLATED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN COMPND 3 1B; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CELL CYCLE-RELATED AND EXPRESSION-ELEVATED PROTEIN IN TUMOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RPB1-CTD; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPRD1B, C20ORF77, CREPT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PEPTIDE BINDING PROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR Z.NI,C.XU,W.TEMPEL,M.EL BAKKOURI,P.LOPPNAU,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,J.F.GREENBLATT,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 4 20-SEP-23 4Q94 1 REMARK SEQADV LINK REVDAT 3 20-AUG-14 4Q94 1 JRNL REVDAT 2 30-JUL-14 4Q94 1 JRNL REVDAT 1 18-JUN-14 4Q94 0 JRNL AUTH Z.NI,C.XU,X.GUO,G.O.HUNTER,O.V.KUZNETSOVA,W.TEMPEL,E.MARCON, JRNL AUTH 2 G.ZHONG,H.GUO,W.H.KUO,J.LI,P.YOUNG,J.B.OLSEN,C.WAN, JRNL AUTH 3 P.LOPPNAU,M.EL BAKKOURI,G.A.SENISTERRA,H.HE,H.HUANG, JRNL AUTH 4 S.S.SIDHU,A.EMILI,S.MURPHY,A.L.MOSLEY,C.H.ARROWSMITH,J.MIN, JRNL AUTH 5 J.F.GREENBLATT JRNL TITL RPRD1A AND RPRD1B ARE HUMAN RNA POLYMERASE II C-TERMINAL JRNL TITL 2 DOMAIN SCAFFOLDS FOR SER5 DEPHOSPHORYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 686 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24997600 JRNL DOI 10.1038/NSMB.2853 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2322 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2155 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3155 ; 1.476 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4956 ; 0.894 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 4.702 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;39.025 ;22.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;14.604 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.215 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2586 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 552 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COOT WAS USED FOR INTERACTIVE MODEL REMARK 3 BUILDING. MODEL GEOMETRY WAS EVALUATED WITH MOLPROBITY. REMARK 4 REMARK 4 4Q94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.07600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 5% REMARK 280 ISOPROPANOL, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.64300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.42950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.22400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.42950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.64300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.22400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 131 REMARK 465 SER A 132 REMARK 465 LYS A 133 REMARK 465 SER A 134 REMARK 465 PRO A 135 REMARK 465 GLY B 1 REMARK 465 ASP B 131 REMARK 465 SER B 132 REMARK 465 LYS B 133 REMARK 465 SER B 134 REMARK 465 PRO B 135 REMARK 465 BTN C 1611 REMARK 465 SER C 1612 REMARK 465 PRO C 1613 REMARK 465 SER C 1614 REMARK 465 TYR C 1615 REMARK 465 SEP C 1616 REMARK 465 PRO C 1617 REMARK 465 THR C 1618 REMARK 465 BTN D 1611 REMARK 465 SER D 1612 REMARK 465 PRO D 1613 REMARK 465 SER D 1614 REMARK 465 TYR D 1615 REMARK 465 SEP D 1616 REMARK 465 PRO D 1617 REMARK 465 THR D 1618 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 46 CD NE CZ NH1 NH2 REMARK 470 LYS A 50 CD CE NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 102 CE NZ REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 123 CD OE1 NE2 REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 SER B 2 OG REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 52 NZ REMARK 470 ASP B 97 OD1 OD2 REMARK 470 GLU B 98 CD OE1 OE2 REMARK 470 LYS B 101 CE NZ REMARK 470 LYS B 102 CD CE NZ REMARK 470 GLU B 105 CD OE1 OE2 REMARK 470 GLN B 112 OE1 NE2 REMARK 470 GLN B 123 CD OE1 NE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 SER C1619 OG REMARK 470 SER D1619 N CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 120 UNK UNX A 205 3545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q96 RELATED DB: PDB DBREF 4Q94 A 2 135 UNP Q9NQG5 RPR1B_HUMAN 2 135 DBREF 4Q94 B 2 135 UNP Q9NQG5 RPR1B_HUMAN 2 135 DBREF 4Q94 C 1611 1631 PDB 4Q94 4Q94 1611 1631 DBREF 4Q94 D 1611 1631 PDB 4Q94 4Q94 1611 1631 SEQADV 4Q94 GLY A 1 UNP Q9NQG5 EXPRESSION TAG SEQADV 4Q94 HIS A 21 UNP Q9NQG5 GLN 21 CONFLICT SEQADV 4Q94 GLY B 1 UNP Q9NQG5 EXPRESSION TAG SEQADV 4Q94 HIS B 21 UNP Q9NQG5 GLN 21 CONFLICT SEQRES 1 A 135 GLY SER SER PHE SER GLU SER ALA LEU GLU LYS LYS LEU SEQRES 2 A 135 SER GLU LEU SER ASN SER GLN HIS SER VAL GLN THR LEU SEQRES 3 A 135 SER LEU TRP LEU ILE HIS HIS ARG LYS HIS ALA GLY PRO SEQRES 4 A 135 ILE VAL SER VAL TRP HIS ARG GLU LEU ARG LYS ALA LYS SEQRES 5 A 135 SER ASN ARG LYS LEU THR PHE LEU TYR LEU ALA ASN ASP SEQRES 6 A 135 VAL ILE GLN ASN SER LYS ARG LYS GLY PRO GLU PHE THR SEQRES 7 A 135 ARG GLU PHE GLU SER VAL LEU VAL ASP ALA PHE SER HIS SEQRES 8 A 135 VAL ALA ARG GLU ALA ASP GLU GLY CYS LYS LYS PRO LEU SEQRES 9 A 135 GLU ARG LEU LEU ASN ILE TRP GLN GLU ARG SER VAL TYR SEQRES 10 A 135 GLY GLY GLU PHE ILE GLN GLN LEU LYS LEU SER MET GLU SEQRES 11 A 135 ASP SER LYS SER PRO SEQRES 1 B 135 GLY SER SER PHE SER GLU SER ALA LEU GLU LYS LYS LEU SEQRES 2 B 135 SER GLU LEU SER ASN SER GLN HIS SER VAL GLN THR LEU SEQRES 3 B 135 SER LEU TRP LEU ILE HIS HIS ARG LYS HIS ALA GLY PRO SEQRES 4 B 135 ILE VAL SER VAL TRP HIS ARG GLU LEU ARG LYS ALA LYS SEQRES 5 B 135 SER ASN ARG LYS LEU THR PHE LEU TYR LEU ALA ASN ASP SEQRES 6 B 135 VAL ILE GLN ASN SER LYS ARG LYS GLY PRO GLU PHE THR SEQRES 7 B 135 ARG GLU PHE GLU SER VAL LEU VAL ASP ALA PHE SER HIS SEQRES 8 B 135 VAL ALA ARG GLU ALA ASP GLU GLY CYS LYS LYS PRO LEU SEQRES 9 B 135 GLU ARG LEU LEU ASN ILE TRP GLN GLU ARG SER VAL TYR SEQRES 10 B 135 GLY GLY GLU PHE ILE GLN GLN LEU LYS LEU SER MET GLU SEQRES 11 B 135 ASP SER LYS SER PRO SEQRES 1 C 21 BTN SER PRO SER TYR SEP PRO THR SER PRO SER TYR SEP SEQRES 2 C 21 PRO THR SER PRO SER TYR SER NH2 SEQRES 1 D 21 BTN SER PRO SER TYR SEP PRO THR SER PRO SER TYR SEP SEQRES 2 D 21 PRO THR SER PRO SER TYR SER NH2 MODRES 4Q94 SEP C 1623 SER PHOSPHOSERINE MODRES 4Q94 SEP D 1623 SER PHOSPHOSERINE HET SEP C1623 10 HET NH2 C1631 1 HET SEP D1623 10 HET NH2 D1631 1 HET SO4 A 201 5 HET SO4 A 202 5 HET UNX A 203 1 HET UNX A 204 1 HET UNX A 205 1 HET UNX A 206 1 HET UNX A 207 1 HET UNX A 208 1 HET UNX A 209 1 HET UNX A 210 1 HET UNX A 211 1 HET SO4 B 201 5 HET UNX B 202 1 HET UNX B 203 1 HET UNX B 204 1 HET UNX B 205 1 HET UNX B 206 1 HET UNX B 207 1 HET UNX B 208 1 HET UNX B 209 1 HET UNX C1701 1 HET UNX D1701 1 HETNAM SEP PHOSPHOSERINE HETNAM NH2 AMINO GROUP HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 3 NH2 2(H2 N) FORMUL 5 SO4 3(O4 S 2-) FORMUL 7 UNX 19(X) FORMUL 27 HOH *82(H2 O) HELIX 1 1 SER A 5 LEU A 16 1 12 HELIX 2 2 SER A 19 HIS A 33 1 15 HELIX 3 3 HIS A 36 ALA A 51 1 16 HELIX 4 4 LYS A 52 ASN A 54 5 3 HELIX 5 5 ARG A 55 LYS A 71 1 17 HELIX 6 6 PRO A 75 SER A 83 1 9 HELIX 7 7 VAL A 84 ARG A 114 1 31 HELIX 8 8 GLY A 118 GLU A 130 1 13 HELIX 9 9 SER B 5 LEU B 16 1 12 HELIX 10 10 SER B 19 HIS B 33 1 15 HELIX 11 11 HIS B 36 ALA B 51 1 16 HELIX 12 12 LYS B 52 ASN B 54 5 3 HELIX 13 13 ARG B 55 LYS B 71 1 17 HELIX 14 14 PRO B 75 ARG B 114 1 40 HELIX 15 15 GLY B 118 MET B 129 1 12 SSBOND 1 CYS A 100 CYS B 100 1555 1555 1.99 LINK C TYR C1622 N SEP C1623 1555 1555 1.33 LINK C SEP C1623 N PRO C1624 1555 1555 1.34 LINK C SER C1630 N NH2 C1631 1555 1555 1.32 LINK C TYR D1622 N SEP D1623 1555 1555 1.33 LINK C SEP D1623 N PRO D1624 1555 1555 1.34 LINK C SER D1630 N NH2 D1631 1555 1555 1.34 SITE 1 AC1 9 SER A 19 HIS A 21 SER A 22 HOH A 306 SITE 2 AC1 9 HOH A 312 HOH A 322 HOH A 334 SER C1628 SITE 3 AC1 9 HOH C1803 SITE 1 AC2 7 SER A 3 PHE A 4 HIS A 33 LYS A 35 SITE 2 AC2 7 HIS A 36 HOH A 301 HOH A 309 SITE 1 AC3 10 SER B 19 HIS B 21 SER B 22 HOH B 303 SITE 2 AC3 10 HOH B 304 HOH B 311 HOH B 326 SER D1628 SITE 3 AC3 10 TYR D1629 HOH D1808 CRYST1 39.286 70.448 108.859 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009186 0.00000