HEADER OXIDOREDUCTASE 13-MAY-14 4QDC TITLE CRYSTAL STRUCTURE OF 3-KETOSTEROID-9-ALPHA-HYDROXYLASE 5 (KSHA5) FROM TITLE 2 R. RHODOCHROUS IN COMPLEX WITH FE2/S2 (INORGANIC) CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETOSTEROID 9ALPHA-HYDROXYLASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS RHODOCHROUS; SOURCE 3 ORGANISM_TAXID: 1829; SOURCE 4 GENE: KSHA, KSHA5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GJ1158; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MIXED FUNCTION OXYGENASES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PENFIELD,L.J.WORRALL,N.C.STRYNADKA,L.D.ELTIS REVDAT 4 20-SEP-23 4QDC 1 REMARK LINK REVDAT 3 22-NOV-17 4QDC 1 REMARK REVDAT 2 01-OCT-14 4QDC 1 JRNL REVDAT 1 30-JUL-14 4QDC 0 JRNL AUTH J.S.PENFIELD,L.J.WORRALL,N.C.STRYNADKA,L.D.ELTIS JRNL TITL SUBSTRATE SPECIFICITIES AND CONFORMATIONAL FLEXIBILITY OF JRNL TITL 2 3-KETOSTEROID 9 ALPHA-HYDROXYLASES. JRNL REF J.BIOL.CHEM. V. 289 25523 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25049233 JRNL DOI 10.1074/JBC.M114.575886 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 140.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 49074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.5140 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.5440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.84000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3121 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4243 ; 1.680 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6505 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.985 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.088 ;24.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;13.070 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3565 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 4.170 ; 2.687 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1476 ; 4.162 ; 2.683 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1845 ; 5.329 ; 4.009 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4QDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE CCD X-RAY REMARK 200 DETECTOR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49275 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NAH2PO4, 0.2 M K2HPO4, 2% PEG REMARK 280 -3000, 20 MM CHES, 0.1 M PHOSPHATE-CITRATE, PH 4.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.48450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.48450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.48450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -81.09150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 140.45460 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -162.18300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 VAL A 14 REMARK 465 GLU A 384 REMARK 465 GLY A 385 REMARK 465 SER A 386 REMARK 465 THR A 387 REMARK 465 ALA A 388 REMARK 465 THR A 389 REMARK 465 PRO A 390 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 42 34.86 -92.72 REMARK 500 HIS A 75 -72.46 -72.24 REMARK 500 ASP A 107 130.15 -171.96 REMARK 500 ALA A 380 -32.47 -36.49 REMARK 500 LYS A 381 16.06 -49.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 FES A 401 S1 110.9 REMARK 620 3 FES A 401 S2 109.7 103.1 REMARK 620 4 CYS A 92 SG 112.1 113.9 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 ND1 REMARK 620 2 FES A 401 S1 114.9 REMARK 620 3 FES A 401 S2 112.9 104.4 REMARK 620 4 HIS A 95 ND1 92.5 117.3 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 187 NE2 REMARK 620 2 HIS A 192 NE2 99.5 REMARK 620 3 ASP A 311 OD2 148.3 96.5 REMARK 620 4 HOH A 776 O 97.0 89.8 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QDD RELATED DB: PDB REMARK 900 RELATED ID: 4QDF RELATED DB: PDB REMARK 900 RELATED ID: 4QCK RELATED DB: PDB DBREF 4QDC A 1 390 UNP F1CMY8 F1CMY8_RHORH 1 390 SEQRES 1 A 390 MET SER ILE ASP THR ALA ARG SER GLY SER ASP ASP ASP SEQRES 2 A 390 VAL GLU ILE ARG GLU ILE GLN ALA ALA ALA ALA PRO THR SEQRES 3 A 390 ARG PHE ALA ARG GLY TRP HIS CYS LEU GLY LEU LEU ARG SEQRES 4 A 390 ASP PHE GLN ASP GLY LYS PRO HIS SER ILE GLU ALA PHE SEQRES 5 A 390 GLY THR LYS LEU VAL VAL PHE ALA ASP SER LYS GLY GLN SEQRES 6 A 390 LEU ASN VAL LEU ASP ALA TYR CYS ARG HIS MET GLY GLY SEQRES 7 A 390 ASP LEU SER ARG GLY GLU VAL LYS GLY ASP SER ILE ALA SEQRES 8 A 390 CYS PRO PHE HIS ASP TRP ARG TRP ASN GLY LYS GLY LYS SEQRES 9 A 390 CYS THR ASP ILE PRO TYR ALA ARG ARG VAL PRO PRO ILE SEQRES 10 A 390 ALA LYS THR ARG ALA TRP THR THR LEU GLU ARG ASN GLY SEQRES 11 A 390 GLN LEU TYR VAL TRP ASN ASP PRO GLN GLY ASN PRO PRO SEQRES 12 A 390 PRO GLU ASP VAL THR ILE PRO GLU ILE ALA GLY TYR GLY SEQRES 13 A 390 THR ASP GLU TRP THR ASP TRP SER TRP LYS SER LEU ARG SEQRES 14 A 390 ILE LYS GLY SER HIS CYS ARG GLU ILE VAL ASP ASN VAL SEQRES 15 A 390 VAL ASP MET ALA HIS PHE PHE TYR ILE HIS TYR SER PHE SEQRES 16 A 390 PRO ARG TYR PHE LYS ASN VAL PHE GLU GLY HIS THR ALA SEQRES 17 A 390 THR GLN TYR MET HIS SER THR GLY ARG GLU ASP VAL ILE SEQRES 18 A 390 SER GLY THR ASN TYR ASP ASP PRO ASN ALA GLU LEU ARG SEQRES 19 A 390 SER GLU ALA THR TYR PHE GLY PRO SER TYR MET ILE ASP SEQRES 20 A 390 TRP LEU GLU SER ASP ALA ASN GLY GLN THR ILE GLU THR SEQRES 21 A 390 ILE LEU ILE ASN CYS HIS TYR PRO VAL SER ASN ASN GLU SEQRES 22 A 390 PHE VAL LEU GLN TYR GLY ALA ILE VAL LYS LYS LEU PRO SEQRES 23 A 390 GLY VAL SER ASP GLU ILE ALA ALA GLY MET ALA GLU GLN SEQRES 24 A 390 PHE ALA GLU GLY VAL GLN LEU GLY PHE GLU GLN ASP VAL SEQRES 25 A 390 GLU ILE TRP LYS ASN LYS ALA PRO ILE ASP ASN PRO LEU SEQRES 26 A 390 LEU SER GLU GLU ASP GLY PRO VAL TYR GLN LEU ARG ARG SEQRES 27 A 390 TRP TYR GLN GLN PHE TYR VAL ASP VAL GLU ASP ILE THR SEQRES 28 A 390 GLU ASP MET THR LYS ARG PHE GLU PHE GLU ILE ASP THR SEQRES 29 A 390 THR ARG ALA VAL ALA SER TRP GLN LYS GLU VAL ALA GLU SEQRES 30 A 390 ASN LEU ALA LYS GLN ALA GLU GLY SER THR ALA THR PRO HET FES A 401 4 HET FE A 402 1 HET SO4 A 403 5 HET ASD A 404 21 HET GOL A 405 6 HET PG4 A 406 13 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION HETNAM ASD 4-ANDROSTENE-3-17-DIONE HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FES FE2 S2 FORMUL 3 FE FE 3+ FORMUL 4 SO4 O4 S 2- FORMUL 5 ASD C19 H26 O2 FORMUL 6 GOL C3 H8 O3 FORMUL 7 PG4 C8 H18 O5 FORMUL 8 HOH *276(H2 O) HELIX 1 1 LEU A 38 GLN A 42 1 5 HELIX 2 2 ASP A 79 GLY A 83 5 5 HELIX 3 3 CYS A 175 ASP A 180 1 6 HELIX 4 4 ASN A 181 VAL A 183 5 3 HELIX 5 5 ASP A 184 ILE A 191 1 8 HELIX 6 6 SER A 222 TYR A 226 5 5 HELIX 7 7 SER A 289 LYS A 318 1 30 HELIX 8 8 PRO A 332 GLN A 342 1 11 HELIX 9 9 PHE A 343 VAL A 345 5 3 HELIX 10 10 ASP A 346 ILE A 350 5 5 HELIX 11 11 THR A 351 LYS A 356 1 6 HELIX 12 12 THR A 364 ASN A 378 1 15 HELIX 13 13 LEU A 379 ALA A 383 5 5 SHEET 1 A 3 GLY A 31 LEU A 37 0 SHEET 2 A 3 GLN A 131 ASN A 136 -1 O VAL A 134 N HIS A 33 SHEET 3 A 3 THR A 125 ARG A 128 -1 N LEU A 126 O TYR A 133 SHEET 1 B 3 HIS A 47 ALA A 51 0 SHEET 2 B 3 THR A 54 ALA A 60 -1 O LEU A 56 N ILE A 49 SHEET 3 B 3 LEU A 66 ASP A 70 -1 O LEU A 69 N VAL A 57 SHEET 1 C 4 GLU A 84 LYS A 86 0 SHEET 2 C 4 SER A 89 ALA A 91 -1 O ALA A 91 N GLU A 84 SHEET 3 C 4 ARG A 98 ASN A 100 -1 O TRP A 99 N ILE A 90 SHEET 4 C 4 CYS A 105 ASP A 107 -1 O ASP A 107 N ARG A 98 SHEET 1 D 8 SER A 164 LYS A 171 0 SHEET 2 D 8 GLU A 273 VAL A 282 -1 O TYR A 278 N LYS A 166 SHEET 3 D 8 GLN A 256 SER A 270 -1 N ILE A 263 O GLY A 279 SHEET 4 D 8 TYR A 244 ALA A 253 -1 N SER A 251 O ILE A 258 SHEET 5 D 8 GLU A 232 PHE A 240 -1 N PHE A 240 O TYR A 244 SHEET 6 D 8 THR A 207 GLY A 216 -1 N MET A 212 O SER A 235 SHEET 7 D 8 SER A 194 GLU A 204 -1 N LYS A 200 O TYR A 211 SHEET 8 D 8 PHE A 358 ILE A 362 -1 O PHE A 360 N ASN A 201 LINK SG CYS A 73 FE2 FES A 401 1555 1555 2.36 LINK ND1 HIS A 75 FE1 FES A 401 1555 1555 2.13 LINK SG CYS A 92 FE2 FES A 401 1555 1555 2.25 LINK ND1 HIS A 95 FE1 FES A 401 1555 1555 2.15 LINK NE2 HIS A 187 FE FE A 402 1555 1555 2.28 LINK NE2 HIS A 192 FE FE A 402 1555 1555 2.45 LINK OD2 ASP A 311 FE FE A 402 1555 1555 2.22 LINK FE FE A 402 O HOH A 776 1555 1555 2.30 SITE 1 AC1 8 CYS A 73 HIS A 75 MET A 76 GLY A 78 SITE 2 AC1 8 CYS A 92 PHE A 94 HIS A 95 TRP A 97 SITE 1 AC2 5 ASN A 181 HIS A 187 HIS A 192 ASP A 311 SITE 2 AC2 5 HOH A 776 SITE 1 AC3 6 LYS A 86 GLY A 87 ASP A 88 SER A 89 SITE 2 AC3 6 HOH A 585 HOH A 715 SITE 1 AC4 14 ASN A 181 VAL A 182 PHE A 188 HIS A 192 SITE 2 AC4 14 GLN A 210 MET A 212 LEU A 233 ALA A 237 SITE 3 AC4 14 MET A 245 ASP A 247 LEU A 262 ASN A 264 SITE 4 AC4 14 HOH A 518 HOH A 776 SITE 1 AC5 6 GLU A 159 THR A 209 TYR A 211 LYS A 283 SITE 2 AC5 6 HOH A 538 HOH A 767 SITE 1 AC6 9 LEU A 326 SER A 327 ASP A 330 GLY A 331 SITE 2 AC6 9 GLN A 335 PHE A 360 HOH A 710 HOH A 711 SITE 3 AC6 9 HOH A 730 CRYST1 162.183 162.183 46.969 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006166 0.003560 0.000000 0.00000 SCALE2 0.000000 0.007120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021291 0.00000