HEADER HYDROLASE 14-MAY-14 4QDN TITLE CRYSTAL STRUCTURE OF THE ENDO-BETA-N-ACETYLGLUCOSAMINIDASE FROM TITLE 2 THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR PROTEIN FLGJ [PEPTIDOGLYCAN HYDROLASE]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAGELLAR-RELATED PROTEIN, MANNOSYL-GLYCOPROTEIN ENDO-BETA- COMPND 5 N-ACETYLGLUCOSAMIDASE; COMPND 6 EC: 3.2.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: THEMA_01495, TM0633, TMARI_0634, TM_0633; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14-TM0633 KEYWDS GH73 FAMILY (CAZY DATABASE), INVERTING MECHANISM, BACTERIAL KEYWDS 2 PEPTIDOGLYCAN HYDROLYSIS, TYPICAL LYSOZYME ALPHA-BETA FOLD WITH ONLY KEYWDS 3 THE ALPHA-LOBE, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LIPSKI,D.NURIZZO,Y.BOURNE,F.VINCENT REVDAT 3 28-FEB-24 4QDN 1 REMARK REVDAT 2 11-FEB-15 4QDN 1 JRNL REVDAT 1 12-NOV-14 4QDN 0 JRNL AUTH A.LIPSKI,M.HERVE,V.LOMBARD,D.NURIZZO,D.MENGIN-LECREULX, JRNL AUTH 2 Y.BOURNE,F.VINCENT JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE JRNL TITL 2 BETA-N-ACETYLGLUCOSAMINIDASE FROM THERMOTOGA MARITIMA: JRNL TITL 3 TOWARD RATIONALIZATION OF MECHANISTIC KNOWLEDGE IN THE GH73 JRNL TITL 4 FAMILY. JRNL REF GLYCOBIOLOGY V. 25 319 2015 JRNL REFN ISSN 0959-6658 JRNL PMID 25344445 JRNL DOI 10.1093/GLYCOB/CWU113 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 16052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.060 REMARK 3 FREE R VALUE TEST SET COUNT : 330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0631 - 2.1420 1.00 8073 167 0.1617 0.1835 REMARK 3 2 2.1420 - 1.7000 0.97 7649 163 0.1859 0.2302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1063 REMARK 3 ANGLE : 0.960 1447 REMARK 3 CHIRALITY : 0.042 155 REMARK 3 PLANARITY : 0.003 183 REMARK 3 DIHEDRAL : 15.443 418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4217 2.1486 16.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1851 REMARK 3 T33: 0.1493 T12: -0.0353 REMARK 3 T13: -0.0081 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.9673 L22: 2.3159 REMARK 3 L33: 5.9073 L12: 1.4532 REMARK 3 L13: 0.3407 L23: 3.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.1102 S13: -0.1605 REMARK 3 S21: -0.1964 S22: -0.1511 S23: 0.2229 REMARK 3 S31: 0.2422 S32: -0.6638 S33: 0.0977 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0943 5.8790 11.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.1783 T22: 0.1553 REMARK 3 T33: 0.1411 T12: -0.0613 REMARK 3 T13: 0.0050 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.0004 L22: 9.4251 REMARK 3 L33: 7.7504 L12: -5.0875 REMARK 3 L13: -4.4905 L23: 6.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.1211 S13: 0.1224 REMARK 3 S21: -0.2470 S22: 0.1437 S23: -0.1416 REMARK 3 S31: -0.1514 S32: 0.0736 S33: -0.1906 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7506 -6.1531 8.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.3342 T22: 0.2856 REMARK 3 T33: 0.2024 T12: 0.0155 REMARK 3 T13: 0.0049 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 5.6313 L22: 4.9855 REMARK 3 L33: 2.0019 L12: -1.2561 REMARK 3 L13: 6.3482 L23: -5.2937 REMARK 3 S TENSOR REMARK 3 S11: 1.0173 S12: 0.5108 S13: -0.4503 REMARK 3 S21: -1.1191 S22: -0.3559 S23: 0.1554 REMARK 3 S31: 0.5181 S32: 0.8680 S33: -0.6679 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0276 -0.1885 16.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.3060 REMARK 3 T33: 0.2039 T12: -0.0001 REMARK 3 T13: 0.0358 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.9073 L22: 6.1541 REMARK 3 L33: 6.4350 L12: 0.1168 REMARK 3 L13: 2.9404 L23: -2.4082 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: 0.1660 S13: 0.1381 REMARK 3 S21: -0.3957 S22: 0.1257 S23: -0.4505 REMARK 3 S31: 0.1765 S32: 0.9385 S33: -0.0696 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0043 8.9041 19.0571 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.8241 REMARK 3 T33: 1.0996 T12: -0.0707 REMARK 3 T13: -0.1221 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 7.2251 L22: 5.5525 REMARK 3 L33: 7.1993 L12: -6.2696 REMARK 3 L13: 4.7861 L23: -4.8365 REMARK 3 S TENSOR REMARK 3 S11: 0.2013 S12: 0.4615 S13: 0.1739 REMARK 3 S21: -0.0503 S22: 0.5062 S23: 0.2582 REMARK 3 S31: 0.1180 S32: -0.0935 S33: -0.5753 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5625 5.5911 20.9224 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.2276 REMARK 3 T33: 0.1560 T12: -0.0222 REMARK 3 T13: 0.0207 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.8453 L22: 6.1197 REMARK 3 L33: 4.5967 L12: 1.1938 REMARK 3 L13: -0.6134 L23: -2.2482 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0112 S13: 0.0743 REMARK 3 S21: -0.0625 S22: 0.1274 S23: -0.3643 REMARK 3 S31: -0.0896 S32: 0.6225 S33: -0.0970 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1382 19.7113 13.0157 REMARK 3 T TENSOR REMARK 3 T11: 0.4366 T22: 0.1345 REMARK 3 T33: 0.3350 T12: -0.0804 REMARK 3 T13: 0.0783 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 6.8790 L22: 2.0237 REMARK 3 L33: 3.9508 L12: 1.4921 REMARK 3 L13: 1.3838 L23: -1.3781 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: 0.0714 S13: 1.0112 REMARK 3 S21: -0.4155 S22: 0.0208 S23: -0.0120 REMARK 3 S31: -1.3293 S32: 0.1400 S33: -0.1473 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4225 13.7645 4.9849 REMARK 3 T TENSOR REMARK 3 T11: 0.2941 T22: 0.2735 REMARK 3 T33: 0.2025 T12: -0.0954 REMARK 3 T13: 0.0651 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 8.4382 L22: 4.2345 REMARK 3 L33: 4.4339 L12: 1.0826 REMARK 3 L13: -0.4255 L23: 1.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.0983 S12: 0.8815 S13: 0.1637 REMARK 3 S21: -0.5502 S22: 0.0633 S23: -0.2894 REMARK 3 S31: -0.5331 S32: 0.5427 S33: 0.0118 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5891 6.9301 2.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.3340 T22: 0.2538 REMARK 3 T33: 0.1361 T12: -0.0861 REMARK 3 T13: -0.0194 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 5.6944 L22: 8.2534 REMARK 3 L33: 2.2827 L12: 2.8122 REMARK 3 L13: -2.9716 L23: -2.5049 REMARK 3 S TENSOR REMARK 3 S11: -0.5164 S12: 0.6515 S13: 0.0612 REMARK 3 S21: -0.9648 S22: 0.5261 S23: 0.3340 REMARK 3 S31: -0.1864 S32: -0.2102 S33: -0.1328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000085922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16057 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% MPD, 0.1 M TRIS-HCL, 0.2 M REMARK 280 AMMONIUM PHOSPHATE MONOBASIC, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.60250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.60250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.59700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.59700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.60250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.28000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.59700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.60250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.28000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 30.59700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.60250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 56 REMARK 465 GLY A 57 REMARK 465 GLY A 58 REMARK 465 VAL A 59 REMARK 465 ARG A 60 REMARK 465 ALA A 61 REMARK 465 GLU A 62 REMARK 465 THR A 63 REMARK 465 LYS A 64 REMARK 465 GLU A 65 REMARK 465 PHE A 66 REMARK 465 ASP A 67 REMARK 465 GLY A 68 REMARK 465 VAL A 69 REMARK 465 LYS A 70 REMARK 465 THR A 71 REMARK 465 ILE A 72 REMARK 465 ASP A 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 54 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 54 CZ3 CH2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 136 C GLU A 136 OXT -0.203 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 54 73.75 -59.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 202 DBREF 4QDN A 1 136 UNP Q9WZA1 Q9WZA1_THEMA 1 136 SEQRES 1 A 136 MET LYS GLU ARG PHE LEU GLU ARG PHE SER GLU SER ALA SEQRES 2 A 136 PHE LEU LEU GLU ARG LEU THR GLY ILE ASP GLY LYS ILE SEQRES 3 A 136 LEU LEU ALA GLN SER ALA LEU GLU THR GLY TRP GLY ARG SEQRES 4 A 136 HIS THR VAL GLY ASN ASN LEU PHE GLY ILE LYS LYS LEU SEQRES 5 A 136 SER TRP LEU GLU GLY GLY VAL ARG ALA GLU THR LYS GLU SEQRES 6 A 136 PHE ASP GLY VAL LYS THR ILE ASP THR PHE GLN SER PHE SEQRES 7 A 136 VAL SER PRO GLU ASN SER MET ILE ALA TYR LEU ILE LEU SEQRES 8 A 136 ILE LYS GLU CYS TYR ASN ARG ALA TRP GLU CYS ARG LYS SEQRES 9 A 136 GLU PRO GLU LYS TYR PHE ARG LEU LEU GLN ARG TYR GLY SEQRES 10 A 136 TYR ALA THR ASP PRO MET TYR ALA GLU LYS CYS LEU ASP SEQRES 11 A 136 VAL TYR ASN CYS VAL GLU HET PO4 A 201 5 HET MPD A 202 8 HETNAM PO4 PHOSPHATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 MPD C6 H14 O2 FORMUL 4 HOH *70(H2 O) HELIX 1 1 MET A 1 GLY A 21 1 21 HELIX 2 2 ASP A 23 GLY A 36 1 14 HELIX 3 3 SER A 80 TYR A 96 1 17 HELIX 4 4 TYR A 96 GLU A 101 1 6 HELIX 5 5 GLU A 105 TYR A 116 1 12 HELIX 6 6 MET A 123 GLU A 136 1 14 SITE 1 AC1 1 GLN A 76 SITE 1 AC2 4 GLU A 34 PHE A 47 GLY A 48 TYR A 118 CRYST1 46.560 61.194 101.205 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009881 0.00000