HEADER TRANSCRIPTION/DNA 25-MAY-14 4QGU TITLE PROTEIN DOMAIN COMPLEX WITH SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-INTERFERON-INDUCIBLE PROTEIN 16; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IFI-16, INTERFERON-INDUCIBLE MYELOID DIFFERENTIATION COMPND 5 TRANSCRIPTIONAL ACTIVATOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*AP*GP*GP*CP*CP*GP*GP*CP*GP*TP*GP*A)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFI16, IFNGIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS OB FOLD, DNA BINDING, CYTOSOLIC DNA SENSOR, CYTOSOLIC, IMMUNE KEYWDS 2 RESPONSE-DNA COMPLEX, TRANSCRIPTION ACTIVATOR-DNA COMPLEX, KEYWDS 3 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.NI,H.RU,L.ZHAO,N.SHAW,W.DING,O.SONGYING,Z.-J.LIU REVDAT 3 28-FEB-24 4QGU 1 SEQADV REVDAT 2 20-JUL-16 4QGU 1 JRNL REVDAT 1 17-JUN-15 4QGU 0 JRNL AUTH X.NI,H.RU,F.MA,L.ZHAO,N.SHAW,Y.FENG,W.DING,W.GONG,Q.WANG, JRNL AUTH 2 S.OUYANG,G.CHENG,Z.J.LIU JRNL TITL NEW INSIGHTS INTO THE STRUCTURAL BASIS OF DNA RECOGNITION BY JRNL TITL 2 HINA AND HINB DOMAINS OF IFI16. JRNL REF J MOL CELL BIOL V. 8 51 2016 JRNL REFN ISSN 1674-2788 JRNL PMID 26246511 JRNL DOI 10.1093/JMCB/MJV053 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 18078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4037 - 4.6224 0.99 3078 170 0.1957 0.2080 REMARK 3 2 4.6224 - 3.6699 0.99 2971 132 0.2166 0.2425 REMARK 3 3 3.6699 - 3.2062 0.98 2913 148 0.2530 0.2645 REMARK 3 4 3.2062 - 2.9132 1.00 2909 162 0.2986 0.3187 REMARK 3 5 2.9132 - 2.7045 0.98 2842 147 0.3151 0.3512 REMARK 3 6 2.7045 - 2.5450 0.84 2468 138 0.3817 0.4527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3657 REMARK 3 ANGLE : 1.528 5007 REMARK 3 CHIRALITY : 0.100 570 REMARK 3 PLANARITY : 0.008 554 REMARK 3 DIHEDRAL : 22.944 1432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18078 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.545 REMARK 200 RESOLUTION RANGE LOW (A) : 38.399 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350 AND 0.2 M POTASSIUM REMARK 280 FLUORIDE; 20% (W/V) PEG 3350 AND 0.2 M SODIUM FORMATE; OR 20% (W/ REMARK 280 V) PEG 3350 AND 0.2 M LITHIUM ACETATE DEHYDRATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.85750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.93250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.85750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.93250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 HIS A 190 REMARK 465 MET A 191 REMARK 465 GLN A 192 REMARK 465 VAL A 193 REMARK 465 THR A 194 REMARK 465 PRO A 195 REMARK 465 ARG A 196 REMARK 465 ARG A 197 REMARK 465 ASN A 198 REMARK 465 LYS A 390 REMARK 465 LYS A 391 REMARK 465 THR A 392 REMARK 465 ASN A 393 REMARK 465 GLY B 188 REMARK 465 SER B 189 REMARK 465 HIS B 190 REMARK 465 MET B 191 REMARK 465 GLN B 192 REMARK 465 VAL B 193 REMARK 465 THR B 194 REMARK 465 PRO B 195 REMARK 465 ARG B 196 REMARK 465 ARG B 197 REMARK 465 ASN B 285 REMARK 465 LYS B 390 REMARK 465 LYS B 391 REMARK 465 THR B 392 REMARK 465 ASN B 393 REMARK 465 DA D -1 REMARK 465 DG D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG D 1 OP2 REMARK 470 DG D 4 OP2 REMARK 470 DC D 6 OP1 REMARK 470 DT D 8 OP1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 251 CD REMARK 480 GLU A 276 CD REMARK 480 GLN A 310 OE1 REMARK 480 ARG A 370 CZ REMARK 480 GLU B 251 CD REMARK 480 GLU B 276 CD REMARK 480 GLN B 310 CA CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N4 DC C 5 O4 DT D 8 1.66 REMARK 500 OD2 ASP A 305 NH1 ARG A 340 1.70 REMARK 500 OD1 ASP A 305 NH1 ARG A 340 1.79 REMARK 500 CG ASP A 305 NH1 ARG A 340 1.86 REMARK 500 NZ LYS B 256 O GLY B 283 1.88 REMARK 500 N4 DC C 4 O6 DG D 9 1.98 REMARK 500 O6 DG C 3 N6 DA D 10 1.99 REMARK 500 NE2 GLN B 236 O GLU B 289 2.10 REMARK 500 OG1 THR B 235 O HOH B 417 2.10 REMARK 500 CE LYS B 256 O GLY B 283 2.11 REMARK 500 NE2 GLN A 201 OE1 GLU A 266 2.14 REMARK 500 OE1 GLN A 310 ND2 ASN A 314 2.18 REMARK 500 N4 DC C 8 O6 DG D 5 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 372 O6 DG C 2 2655 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 1 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DA C 1 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 DG C 3 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 3 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 9.6 DEGREES REMARK 500 DC C 4 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG C 6 C3' - C2' - C1' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG C 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG C 9 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 10 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DG C 11 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 11.0 DEGREES REMARK 500 DA C 12 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DG D 1 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG D 4 O5' - C5' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DG D 4 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 235 -165.59 -125.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 372 ASN B 373 -34.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 4QGU A 192 393 UNP Q16666 IF16_HUMAN 192 393 DBREF 4QGU B 192 393 UNP Q16666 IF16_HUMAN 192 393 DBREF 4QGU C 1 12 PDB 4QGU 4QGU 1 12 DBREF 4QGU D -1 10 PDB 4QGU 4QGU -1 10 SEQADV 4QGU GLY A 188 UNP Q16666 EXPRESSION TAG SEQADV 4QGU SER A 189 UNP Q16666 EXPRESSION TAG SEQADV 4QGU HIS A 190 UNP Q16666 EXPRESSION TAG SEQADV 4QGU MET A 191 UNP Q16666 EXPRESSION TAG SEQADV 4QGU GLY B 188 UNP Q16666 EXPRESSION TAG SEQADV 4QGU SER B 189 UNP Q16666 EXPRESSION TAG SEQADV 4QGU HIS B 190 UNP Q16666 EXPRESSION TAG SEQADV 4QGU MET B 191 UNP Q16666 EXPRESSION TAG SEQRES 1 A 206 GLY SER HIS MET GLN VAL THR PRO ARG ARG ASN VAL LEU SEQRES 2 A 206 GLN LYS ARG PRO VAL ILE VAL LYS VAL LEU SER THR THR SEQRES 3 A 206 LYS PRO PHE GLU TYR GLU THR PRO GLU MET GLU LYS LYS SEQRES 4 A 206 ILE MET PHE HIS ALA THR VAL ALA THR GLN THR GLN PHE SEQRES 5 A 206 PHE HIS VAL LYS VAL LEU ASN THR SER LEU LYS GLU LYS SEQRES 6 A 206 PHE ASN GLY LYS LYS ILE ILE ILE ILE SER ASP TYR LEU SEQRES 7 A 206 GLU TYR ASP SER LEU LEU GLU VAL ASN GLU GLU SER THR SEQRES 8 A 206 VAL SER GLU ALA GLY PRO ASN GLN THR PHE GLU VAL PRO SEQRES 9 A 206 ASN LYS ILE ILE ASN ARG ALA LYS GLU THR LEU LYS ILE SEQRES 10 A 206 ASP ILE LEU HIS LYS GLN ALA SER GLY ASN ILE VAL TYR SEQRES 11 A 206 GLY VAL PHE MET LEU HIS LYS LYS THR VAL ASN GLN LYS SEQRES 12 A 206 THR THR ILE TYR GLU ILE GLN ASP ASP ARG GLY LYS MET SEQRES 13 A 206 ASP VAL VAL GLY THR GLY GLN CYS HIS ASN ILE PRO CYS SEQRES 14 A 206 GLU GLU GLY ASP LYS LEU GLN LEU PHE CYS PHE ARG LEU SEQRES 15 A 206 ARG LYS LYS ASN GLN MET SER LYS LEU ILE SER GLU MET SEQRES 16 A 206 HIS SER PHE ILE GLN ILE LYS LYS LYS THR ASN SEQRES 1 B 206 GLY SER HIS MET GLN VAL THR PRO ARG ARG ASN VAL LEU SEQRES 2 B 206 GLN LYS ARG PRO VAL ILE VAL LYS VAL LEU SER THR THR SEQRES 3 B 206 LYS PRO PHE GLU TYR GLU THR PRO GLU MET GLU LYS LYS SEQRES 4 B 206 ILE MET PHE HIS ALA THR VAL ALA THR GLN THR GLN PHE SEQRES 5 B 206 PHE HIS VAL LYS VAL LEU ASN THR SER LEU LYS GLU LYS SEQRES 6 B 206 PHE ASN GLY LYS LYS ILE ILE ILE ILE SER ASP TYR LEU SEQRES 7 B 206 GLU TYR ASP SER LEU LEU GLU VAL ASN GLU GLU SER THR SEQRES 8 B 206 VAL SER GLU ALA GLY PRO ASN GLN THR PHE GLU VAL PRO SEQRES 9 B 206 ASN LYS ILE ILE ASN ARG ALA LYS GLU THR LEU LYS ILE SEQRES 10 B 206 ASP ILE LEU HIS LYS GLN ALA SER GLY ASN ILE VAL TYR SEQRES 11 B 206 GLY VAL PHE MET LEU HIS LYS LYS THR VAL ASN GLN LYS SEQRES 12 B 206 THR THR ILE TYR GLU ILE GLN ASP ASP ARG GLY LYS MET SEQRES 13 B 206 ASP VAL VAL GLY THR GLY GLN CYS HIS ASN ILE PRO CYS SEQRES 14 B 206 GLU GLU GLY ASP LYS LEU GLN LEU PHE CYS PHE ARG LEU SEQRES 15 B 206 ARG LYS LYS ASN GLN MET SER LYS LEU ILE SER GLU MET SEQRES 16 B 206 HIS SER PHE ILE GLN ILE LYS LYS LYS THR ASN SEQRES 1 C 12 DA DG DG DC DC DG DG DC DG DT DG DA SEQRES 1 D 12 DA DG DG DC DC DG DG DC DG DT DG DA FORMUL 5 HOH *59(H2 O) HELIX 1 1 ASN A 246 ASN A 254 5 9 HELIX 2 2 PRO A 291 GLU A 300 1 10 HELIX 3 3 LYS A 303 HIS A 308 1 6 HELIX 4 4 THR A 348 HIS A 352 5 5 HELIX 5 5 ASN B 246 ASN B 254 5 9 HELIX 6 6 PRO B 291 GLU B 300 1 10 HELIX 7 7 LYS B 303 HIS B 308 1 6 HELIX 8 8 THR B 348 HIS B 352 5 5 SHEET 1 A 6 LEU A 200 GLN A 201 0 SHEET 2 A 6 TYR A 264 TYR A 267 -1 O TYR A 264 N GLN A 201 SHEET 3 A 6 LEU A 270 VAL A 273 -1 O GLU A 272 N LEU A 265 SHEET 4 A 6 PHE A 239 VAL A 244 1 N LYS A 243 O VAL A 273 SHEET 5 A 6 LYS A 225 ALA A 234 -1 N PHE A 229 O VAL A 244 SHEET 6 A 6 PHE A 216 GLU A 219 -1 N TYR A 218 O LYS A 226 SHEET 1 B 8 LEU A 200 GLN A 201 0 SHEET 2 B 8 TYR A 264 TYR A 267 -1 O TYR A 264 N GLN A 201 SHEET 3 B 8 LEU A 270 VAL A 273 -1 O GLU A 272 N LEU A 265 SHEET 4 B 8 PHE A 239 VAL A 244 1 N LYS A 243 O VAL A 273 SHEET 5 B 8 LYS A 225 ALA A 234 -1 N PHE A 229 O VAL A 244 SHEET 6 B 8 VAL A 205 THR A 212 -1 N LEU A 210 O THR A 232 SHEET 7 B 8 ILE A 258 SER A 262 -1 O ILE A 259 N VAL A 207 SHEET 8 B 8 THR A 278 GLU A 281 -1 O SER A 280 N ILE A 260 SHEET 1 C 7 PHE A 385 ILE A 388 0 SHEET 2 C 7 LYS A 361 LYS A 372 -1 N GLN A 363 O GLN A 387 SHEET 3 C 7 MET A 375 ILE A 379 -1 O ILE A 379 N ARG A 368 SHEET 4 C 7 GLY A 341 GLY A 347 1 N VAL A 346 O LEU A 378 SHEET 5 C 7 THR A 332 ASP A 338 -1 N TYR A 334 O VAL A 345 SHEET 6 C 7 ILE A 315 VAL A 327 -1 N LYS A 324 O GLU A 335 SHEET 7 C 7 LYS A 361 LYS A 372 -1 O LEU A 364 N GLY A 318 SHEET 1 D 5 PHE B 216 GLU B 219 0 SHEET 2 D 5 LYS B 225 ALA B 234 -1 O LYS B 226 N TYR B 218 SHEET 3 D 5 PHE B 239 VAL B 244 -1 O VAL B 242 N ALA B 231 SHEET 4 D 5 LEU B 270 VAL B 273 1 O VAL B 273 N LYS B 243 SHEET 5 D 5 LEU B 265 TYR B 267 -1 N LEU B 265 O GLU B 272 SHEET 1 E 5 PHE B 216 GLU B 219 0 SHEET 2 E 5 LYS B 225 ALA B 234 -1 O LYS B 226 N TYR B 218 SHEET 3 E 5 VAL B 205 THR B 212 -1 N LEU B 210 O THR B 232 SHEET 4 E 5 ILE B 258 SER B 262 -1 O ILE B 261 N VAL B 205 SHEET 5 E 5 THR B 278 GLU B 281 -1 O THR B 278 N SER B 262 SHEET 1 F 7 PHE B 385 ILE B 388 0 SHEET 2 F 7 LYS B 361 LYS B 371 -1 N GLN B 363 O GLN B 387 SHEET 3 F 7 SER B 376 ILE B 379 -1 O ILE B 379 N ARG B 368 SHEET 4 F 7 GLY B 341 GLY B 347 1 N ASP B 344 O LEU B 378 SHEET 5 F 7 THR B 332 ASP B 338 -1 N TYR B 334 O VAL B 345 SHEET 6 F 7 ILE B 315 VAL B 327 -1 N LYS B 324 O GLU B 335 SHEET 7 F 7 LYS B 361 LYS B 371 -1 O LEU B 364 N GLY B 318 CISPEP 1 GLY B 255 LYS B 256 0 -8.36 CRYST1 85.715 91.865 69.978 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011667 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014290 0.00000