HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAY-14 4QHX TITLE CRYSTAL STRUCTURE OF A PUTATIVE TWO-DOMAIN SUGAR HYDROLASE TITLE 2 (BACCAC_02064) FROM BACTEROIDES CACCAE ATCC 43185 AT 1.80 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES CACCAE; SOURCE 3 ORGANISM_TAXID: 411901; SOURCE 4 STRAIN: ATCC 43185; SOURCE 5 GENE: BACCAC_02064; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO DOMAIN PROTEIN, GALACTOSE-BINDING DOMAIN-LIKE FOLD, CONCANAVALIN KEYWDS 2 A-LIKE FOLD, PF11958 FAMILY, DUF3472, STRUCTURAL GENOMICS, JOINT KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 4 PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4QHX 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4QHX 1 JRNL REVDAT 3 22-NOV-17 4QHX 1 REMARK REVDAT 2 24-DEC-14 4QHX 1 TITLE REVDAT 1 23-JUL-14 4QHX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACCAC_02064) JRNL TITL 2 FROM BACTEROIDES CACCAE ATCC 43185 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3043 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.65000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3540 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3236 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4797 ; 1.525 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7493 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 6.479 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;35.117 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;12.412 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;21.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4010 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 860 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1637 ; 1.198 ; 2.052 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1636 ; 1.197 ; 2.051 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2054 ; 1.741 ; 3.073 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6438 7.8641 111.1545 REMARK 3 T TENSOR REMARK 3 T11: 0.0360 T22: 0.0198 REMARK 3 T33: 0.0291 T12: 0.0040 REMARK 3 T13: 0.0070 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.5697 L22: 0.1775 REMARK 3 L33: 0.3706 L12: -0.0535 REMARK 3 L13: -0.2973 L23: -0.0114 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.0323 S13: 0.0718 REMARK 3 S21: 0.0193 S22: 0.0167 S23: -0.0206 REMARK 3 S31: -0.0473 S32: -0.0262 S33: -0.0236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. GLYCEROL (GOL), SULFATE (SO4), CHLORIDE (CL), REMARK 3 AND PEG (PEG) MODELED WERE PRESENT IN CRYSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 4QHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934,0.95369,0.97913 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43818 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.643 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M AMMONIUM SULFATE, 20.0% REMARK 280 GLYCEROL, 20.0% POLYETHYLENE GLYCOL 4000, 0.1M SODIUM ACETATE PH REMARK 280 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.02100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.76639 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.18567 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 55.02100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 31.76639 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.18567 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 55.02100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 31.76639 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.18567 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.53278 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 70.37133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 63.53278 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 70.37133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 63.53278 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.37133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -415.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 504 LIES ON A SPECIAL POSITION. REMARK 375 O3 SO4 A 504 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 507 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 710 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 233 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 70.10 54.69 REMARK 500 HIS A 189 36.79 75.61 REMARK 500 GLU A 253 49.08 -150.34 REMARK 500 GLU A 253 52.20 -151.72 REMARK 500 ILE A 302 -71.98 -90.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 520 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419284 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4QHW RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 19-418 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4QHX A 19 418 UNP A5ZGP5 A5ZGP5_9BACE 19 418 SEQADV 4QHX GLY A 0 UNP A5ZGP5 EXPRESSION TAG SEQRES 1 A 401 GLY GLN PRO GLN GLN VAL VAL VAL GLY VAL SER GLY ASN SEQRES 2 A 401 GLY TYR VAL THR ARG GLN GLN ASP GLY ALA ARG ILE THR SEQRES 3 A 401 GLN ARG GLY VAL THR HIS TRP THR ASN PRO LYS SER ILE SEQRES 4 A 401 VAL SER ILE TYR PHE TYR LEU HIS GLN PRO THR THR ALA SEQRES 5 A 401 ASP LEU SER LEU TYR ALA LYS GLY HIS SER GLU ILE LYS SEQRES 6 A 401 VAL SER TYR GLY LYS LYS GLY PHE LYS VAL ASN LEU GLN SEQRES 7 A 401 SER ASN ASP PHE THR LYS VAL PRO VAL GLY SER ILE ASP SEQRES 8 A 401 ILE ARG GLN ALA GLY TYR VAL ARG ILE ASP LEU GLN GLY SEQRES 9 A 401 VAL SER LYS SER GLY GLU GLY PHE GLY GLU ILE LYS GLN SEQRES 10 A 401 LEU ILE ALA ASP ASN VAL THR GLY LYS SER ASN TYR VAL SEQRES 11 A 401 LYS ASP PHE SER ASP TYR TRP GLY ARG ARG GLY PRO SER SEQRES 12 A 401 VAL HIS LEU GLY TYR ALA LEU PRO GLU GLY ASP THR GLU SEQRES 13 A 401 TRP PHE TYR ASN GLU ILE THR VAL PRO LYS GLU GLY GLU SEQRES 14 A 401 THR MSE HIS SER TYR TYR MSE ALA ALA GLY PHE GLY GLU SEQRES 15 A 401 GLY TYR PHE GLY MSE GLN TYR ASN SER PRO THR GLU ARG SEQRES 16 A 401 ARG ILE LEU PHE SER VAL TRP SER PRO PHE ASP THR GLN SEQRES 17 A 401 ASN PRO LYS GLU ILE PRO ASP ASP GLN LYS ILE LYS LEU SEQRES 18 A 401 LEU ARG GLN GLY LYS ASP VAL HIS ILE GLY GLU PHE GLY SEQRES 19 A 401 ASN GLU GLY SER GLY GLY GLN SER TYR LEU LYS TYR PRO SEQRES 20 A 401 TRP LYS ALA GLY ASN THR TYR LYS PHE LEU MSE GLN ILE SEQRES 21 A 401 ARG PRO ASP GLY ASN GLY ASN THR THR TYR THR ALA TYR SEQRES 22 A 401 PHE TYR ALA THR ASP GLU LYS GLU TRP LYS LEU ILE ALA SEQRES 23 A 401 SER PHE LEU ARG PRO LYS THR ASN THR TRP TYR LYS ARG SEQRES 24 A 401 PRO HIS SER PHE LEU GLU ASN PHE SER PRO GLU GLN GLY SEQRES 25 A 401 TYR LEU SER ARG GLU VAL PHE PHE GLY ASN GLN TRP ALA SEQRES 26 A 401 ARG SER LYS GLU GLY LYS TRP SER ARG LEU THR ASP ALA SEQRES 27 A 401 THR PHE THR HIS ASP ALA THR ALA SER ALA GLN VAL ARG SEQRES 28 A 401 LEU ASP TYR GLN GLY GLY ASN THR LYS ASP ASN ARG PHE SEQRES 29 A 401 TYR LEU LYS MSE GLY GLY PHE PHE ASN GLU SER VAL PRO SEQRES 30 A 401 MSE GLY THR LYS PHE TYR CYS LYS PRO THR GLY LYS GLU SEQRES 31 A 401 PRO GLU ILE ASP TRP GLU ALA LEU LYS GLN LEU MODRES 4QHX MSE A 188 MET SELENOMETHIONINE MODRES 4QHX MSE A 193 MET SELENOMETHIONINE MODRES 4QHX MSE A 204 MET SELENOMETHIONINE MODRES 4QHX MSE A 275 MET SELENOMETHIONINE MODRES 4QHX MSE A 385 MET SELENOMETHIONINE MODRES 4QHX MSE A 395 MET SELENOMETHIONINE HET MSE A 188 8 HET MSE A 193 8 HET MSE A 204 8 HET MSE A 275 8 HET MSE A 385 8 HET MSE A 395 8 HET CL A 501 1 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET GOL A 515 6 HET GOL A 516 6 HET GOL A 517 6 HET PEG A 518 7 HET PEG A 519 7 HET PEG A 520 7 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 GOL 7(C3 H8 O3) FORMUL 19 PEG 3(C4 H10 O3) FORMUL 22 HOH *423(H2 O) HELIX 1 1 VAL A 27 ASN A 30 1 4 HELIX 2 2 GLN A 36 ALA A 40 5 5 HELIX 3 3 SER A 151 GLY A 158 1 8 HELIX 4 4 PRO A 182 GLU A 186 5 5 HELIX 5 5 ASN A 226 ILE A 230 5 5 HELIX 6 6 PRO A 231 LYS A 235 5 5 HELIX 7 7 THR A 294 LYS A 297 5 4 HELIX 8 8 SER A 325 GLY A 329 5 5 HELIX 9 9 ASP A 360 ALA A 365 1 6 HELIX 10 10 ASP A 411 LEU A 418 1 8 SHEET 1 A 6 GLN A 21 GLY A 26 0 SHEET 2 A 6 GLU A 131 VAL A 140 -1 O LEU A 135 N VAL A 25 SHEET 3 A 6 THR A 67 TYR A 85 -1 N SER A 72 O ILE A 136 SHEET 4 A 6 GLY A 113 LYS A 124 -1 O VAL A 122 N GLU A 80 SHEET 5 A 6 ILE A 56 LEU A 63 -1 N PHE A 61 O VAL A 115 SHEET 6 A 6 LYS A 88 ILE A 109 0 SHEET 1 B 5 GLY A 31 ARG A 35 0 SHEET 2 B 5 ILE A 56 LEU A 63 -1 O SER A 58 N TYR A 32 SHEET 3 B 5 GLY A 113 LYS A 124 -1 O VAL A 115 N PHE A 61 SHEET 4 B 5 THR A 67 TYR A 85 -1 N GLU A 80 O VAL A 122 SHEET 5 B 5 SER A 144 ASN A 145 0 SHEET 1 C 2 ARG A 41 THR A 43 0 SHEET 2 C 2 GLY A 46 THR A 48 -1 O GLY A 46 N THR A 43 SHEET 1 D 9 HIS A 246 PHE A 250 0 SHEET 2 D 9 GLY A 256 LYS A 262 -1 O TYR A 260 N HIS A 246 SHEET 3 D 9 GLU A 211 TRP A 219 -1 N ILE A 214 O LEU A 261 SHEET 4 D 9 GLY A 200 SER A 208 -1 N GLY A 203 O LEU A 215 SHEET 5 D 9 SER A 190 GLY A 196 -1 N TYR A 192 O MSE A 204 SHEET 6 D 9 HIS A 318 ASN A 323 -1 O HIS A 318 N GLY A 196 SHEET 7 D 9 VAL A 161 TYR A 165 -1 N VAL A 161 O LEU A 321 SHEET 8 D 9 ASP A 354 HIS A 359 -1 O THR A 358 N HIS A 162 SHEET 9 D 9 LYS A 398 TYR A 400 -1 O PHE A 399 N ALA A 355 SHEET 1 E 7 LYS A 237 GLN A 241 0 SHEET 2 E 7 GLU A 298 ARG A 307 -1 O SER A 304 N LEU A 239 SHEET 3 E 7 THR A 285 ALA A 293 -1 N THR A 285 O ARG A 307 SHEET 4 E 7 THR A 270 PRO A 279 -1 N GLN A 276 O THR A 288 SHEET 5 E 7 THR A 172 THR A 180 -1 N ILE A 179 O TYR A 271 SHEET 6 E 7 SER A 332 SER A 344 -1 O ARG A 343 N GLU A 173 SHEET 7 E 7 TRP A 349 ARG A 351 -1 O SER A 350 N ALA A 342 SHEET 1 F 8 LYS A 237 GLN A 241 0 SHEET 2 F 8 GLU A 298 ARG A 307 -1 O SER A 304 N LEU A 239 SHEET 3 F 8 THR A 285 ALA A 293 -1 N THR A 285 O ARG A 307 SHEET 4 F 8 THR A 270 PRO A 279 -1 N GLN A 276 O THR A 288 SHEET 5 F 8 THR A 172 THR A 180 -1 N ILE A 179 O TYR A 271 SHEET 6 F 8 SER A 332 SER A 344 -1 O ARG A 343 N GLU A 173 SHEET 7 F 8 PHE A 381 GLY A 386 -1 O PHE A 381 N PHE A 337 SHEET 8 F 8 TYR A 371 ASN A 375 -1 N GLN A 372 O LYS A 384 LINK C THR A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N HIS A 189 1555 1555 1.34 LINK C TYR A 192 N MSE A 193 1555 1555 1.34 LINK C MSE A 193 N ALA A 194 1555 1555 1.33 LINK C GLY A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N GLN A 205 1555 1555 1.32 LINK C LEU A 274 N MSE A 275 1555 1555 1.33 LINK C MSE A 275 N GLN A 276 1555 1555 1.32 LINK C LYS A 384 N MSE A 385 1555 1555 1.34 LINK C MSE A 385 N GLY A 386 1555 1555 1.32 LINK C PRO A 394 N MSE A 395 1555 1555 1.32 LINK C MSE A 395 N GLY A 396 1555 1555 1.33 SITE 1 AC1 3 GLY A 128 HOH A1021 HOH A1022 SITE 1 AC2 6 ARG A 343 GLY A 347 TRP A 349 TRP A 412 SITE 2 AC2 6 HOH A 974 HOH A1005 SITE 1 AC3 8 HIS A 359 GLN A 366 TYR A 371 PRO A 394 SITE 2 AC3 8 MSE A 395 HOH A 657 HOH A 800 HOH A 907 SITE 1 AC4 2 TYR A 74 HOH A 653 SITE 1 AC5 5 LYS A 82 LYS A 91 LYS A 345 HOH A 856 SITE 2 AC5 5 HOH A1003 SITE 1 AC6 4 THR A 43 ARG A 45 THR A 48 HIS A 49 SITE 1 AC7 3 ASN A 97 HOH A 710 HOH A 817 SITE 1 AC8 4 SER A 160 HIS A 162 PHE A 320 GLU A 322 SITE 1 AC9 8 ALA A 166 LEU A 167 PRO A 168 ARG A 351 SITE 2 AC9 8 THR A 353 HOH A 620 HOH A 677 HOH A 791 SITE 1 BC1 4 GLN A 44 ARG A 45 ASN A 93 HOH A 840 SITE 1 BC2 6 SER A 28 THR A 43 ASP A 152 ARG A 156 SITE 2 BC2 6 PRO A 326 HOH A 973 SITE 1 BC3 4 THR A 376 LYS A 377 ASP A 378 GOL A 513 SITE 1 BC4 3 GLU A 334 PHE A 336 GOL A 512 SITE 1 BC5 4 GLN A 372 PHE A 389 ASN A 390 GLU A 391 SITE 1 BC6 7 GLY A 338 ASN A 339 ARG A 351 ASN A 379 SITE 2 BC6 7 ARG A 380 THR A 404 GLY A 405 SITE 1 BC7 6 ARG A 213 MSE A 395 THR A 397 PEG A 520 SITE 2 BC7 6 HOH A 796 HOH A 858 SITE 1 BC8 3 SER A 151 ASP A 152 TYR A 153 SITE 1 BC9 7 PHE A 197 GLY A 198 TYR A 201 TRP A 219 SITE 2 BC9 7 HIS A 318 HOH A 708 HOH A 942 SITE 1 CC1 1 THR A 362 SITE 1 CC2 2 PHE A 324 GOL A 516 CRYST1 110.042 110.042 105.557 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009087 0.005247 0.000000 0.00000 SCALE2 0.000000 0.010493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009474 0.00000