HEADER HYDROLASE 30-MAY-14 4QHZ TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE (BDI_3914) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.13 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503; SOURCE 5 GENE: BDI_3914; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF06439 FAMILY PROTEIN, DUF1080, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4QHZ 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4QHZ 1 JRNL REVDAT 2 22-NOV-17 4QHZ 1 REMARK REVDAT 1 30-JUL-14 4QHZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSYL HYDROLASE JRNL TITL 2 (BDI_3914) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.13 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 55339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7796 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7199 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10641 ; 1.199 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16605 ; 0.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 962 ; 6.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;35.614 ;25.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 986 ;10.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ; 8.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1164 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8884 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1784 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3821 ; 1.378 ; 3.691 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3820 ; 1.378 ; 3.690 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4774 ; 2.045 ; 6.907 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2930 78.9270 29.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0456 REMARK 3 T33: 0.0210 T12: -0.0041 REMARK 3 T13: -0.0070 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3351 L22: 0.7850 REMARK 3 L33: 0.6433 L12: -0.0303 REMARK 3 L13: -0.1282 L23: -0.1214 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0036 S13: -0.0205 REMARK 3 S21: -0.0171 S22: 0.0039 S23: 0.0570 REMARK 3 S31: 0.0348 S32: -0.0713 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6870 95.2190 30.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0289 REMARK 3 T33: 0.0430 T12: -0.0019 REMARK 3 T13: -0.0007 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.5250 L22: 0.7492 REMARK 3 L33: 0.5793 L12: 0.1504 REMARK 3 L13: 0.0357 L23: 0.0748 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0241 S13: 0.0835 REMARK 3 S21: -0.0175 S22: 0.0113 S23: -0.0970 REMARK 3 S31: -0.0297 S32: 0.0571 S33: -0.0107 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 26 C 265 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9250 79.1240 -6.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0338 REMARK 3 T33: 0.0264 T12: 0.0267 REMARK 3 T13: -0.0059 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.1760 L22: 0.7945 REMARK 3 L33: 0.5277 L12: 0.0298 REMARK 3 L13: -0.0602 L23: 0.2610 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0151 S13: 0.0078 REMARK 3 S21: -0.0669 S22: 0.0014 S23: -0.0599 REMARK 3 S31: 0.0533 S32: 0.0649 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 26 D 265 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9510 96.7470 -5.9020 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0467 REMARK 3 T33: 0.0527 T12: 0.0393 REMARK 3 T13: -0.0175 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3031 L22: 1.0483 REMARK 3 L33: 0.5123 L12: -0.0193 REMARK 3 L13: -0.0601 L23: 0.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0212 S13: 0.0568 REMARK 3 S21: -0.1275 S22: -0.0264 S23: 0.1019 REMARK 3 S31: -0.0837 S32: -0.0864 S33: -0.0079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR REMARK 3 RO CRYSTALLIZATION. THEREFORE ALL LYSINE RESIDUES (EXCEPT REMARK 3 RESIDUES 102, 169, AND 197) HAVE BEEN MODELED AS MLY. ELECTRON REMARK 3 DENSITY SUGGESTS THAT THESE THREE RESIDUES ARE UNMODIFIED. 6. REMARK 3 MAGNESIUM (MG) IONS AND 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 7. THE REMARK 3 REFINEMENT WAS RESTRAINED AGAINST THE MAD PHASES FROM A CRYSTAL REMARK 3 THAT WAS USED TO OBTAIN THE STRUCTURE SOLUTION. REMARK 4 REMARK 4 4QHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000086078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-13; 13-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895; 0.91837,0.97941 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT; REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING); DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; MARMOSAIC REMARK 200 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 48.254 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS SOLVED BY THREE WAVELENGTH MAD METHOD AT REMARK 200 2.40A RESOLUTION. THE STRUCTURE WAS REFINED AT 2.13A RESOLUTION REMARK 200 AGAINST A DATASET COLLECTED FROM A DIFFERENT CRYSTAL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 20.0% REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.38150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 TETRAMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 21 REMARK 465 GLN A 22 REMARK 465 ASP A 23 REMARK 465 MLY A 24 REMARK 465 MLY A 25 REMARK 465 MLY A 26 REMARK 465 GLU A 27 REMARK 465 PHE A 28 REMARK 465 MLY A 29 REMARK 465 GLY B 0 REMARK 465 ALA B 21 REMARK 465 GLN B 22 REMARK 465 ASP B 23 REMARK 465 MLY B 24 REMARK 465 MLY B 25 REMARK 465 MLY B 26 REMARK 465 GLU B 27 REMARK 465 PHE B 28 REMARK 465 MLY B 29 REMARK 465 GLY C 0 REMARK 465 ALA C 21 REMARK 465 GLN C 22 REMARK 465 ASP C 23 REMARK 465 MLY C 24 REMARK 465 MLY C 25 REMARK 465 GLY D 0 REMARK 465 ALA D 21 REMARK 465 GLN D 22 REMARK 465 ASP D 23 REMARK 465 MLY D 24 REMARK 465 MLY D 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MLY A 76 CE NZ CH1 CH2 REMARK 470 MSE B 30 CG SE CE REMARK 470 MLY C 26 CG CD CE NZ CH1 CH2 REMARK 470 MLY D 26 CG CD CE NZ CH1 CH2 REMARK 470 MSE D 30 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 90 44.92 -108.09 REMARK 500 ASN A 114 -94.27 -115.03 REMARK 500 SER A 132 -127.75 50.71 REMARK 500 SER A 138 -152.70 -139.73 REMARK 500 GLN A 170 -52.52 -120.85 REMARK 500 GLU B 90 44.74 -107.77 REMARK 500 ASN B 114 -94.45 -114.80 REMARK 500 SER B 132 -127.84 50.89 REMARK 500 SER B 138 -152.90 -139.03 REMARK 500 GLN B 170 -52.52 -120.68 REMARK 500 GLU C 90 44.73 -107.58 REMARK 500 ASN C 114 -94.63 -114.76 REMARK 500 SER C 132 -128.09 50.96 REMARK 500 SER C 138 -152.89 -139.70 REMARK 500 GLN C 170 -52.83 -120.66 REMARK 500 GLU D 90 44.98 -107.95 REMARK 500 ASN D 114 -94.79 -115.04 REMARK 500 SER D 132 -127.59 50.98 REMARK 500 SER D 138 -152.96 -140.20 REMARK 500 GLN D 170 -52.03 -121.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 SER A 138 O 86.0 REMARK 620 3 GLU A 147 OE2 178.6 92.6 REMARK 620 4 GLN A 149 OE1 90.4 83.6 89.0 REMARK 620 5 GLN A 246 OE1 89.5 85.7 90.8 169.2 REMARK 620 6 HOH A 401 O 97.7 174.4 83.6 92.2 98.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 137 OD1 REMARK 620 2 SER B 138 O 89.8 REMARK 620 3 GLU B 147 OE2 175.4 89.7 REMARK 620 4 GLN B 149 OE1 96.4 86.4 88.2 REMARK 620 5 GLN B 246 OE1 90.2 83.5 85.2 167.9 REMARK 620 6 HOH B 401 O 102.0 168.2 78.5 92.7 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 137 OD1 REMARK 620 2 SER C 138 O 85.0 REMARK 620 3 GLU C 147 OE2 170.7 85.8 REMARK 620 4 GLN C 149 OE1 94.0 80.5 86.0 REMARK 620 5 GLN C 246 OE1 90.8 80.8 86.1 160.2 REMARK 620 6 HOH C 401 O 105.0 168.2 84.3 92.3 105.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 137 OD1 REMARK 620 2 SER D 138 O 81.6 REMARK 620 3 GLU D 147 OE2 168.4 86.9 REMARK 620 4 GLN D 149 OE1 90.9 78.8 87.8 REMARK 620 5 GLN D 246 OE1 88.4 80.0 88.6 158.6 REMARK 620 6 HOH D 401 O 105.7 172.7 85.9 99.5 101.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-394763 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 1.THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-265 OF THE TARGET REMARK 999 SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO REMARK 999 CRYSTALLIZATION. ALL LYSINE RESIDUES (EXCEPT RESIDUES 102, 169, AND REMARK 999 197) HAVE BEEN MODELED AS MLY. DBREF 4QHZ A 21 265 UNP A6LIT1 A6LIT1_PARD8 21 265 DBREF 4QHZ B 21 265 UNP A6LIT1 A6LIT1_PARD8 21 265 DBREF 4QHZ C 21 265 UNP A6LIT1 A6LIT1_PARD8 21 265 DBREF 4QHZ D 21 265 UNP A6LIT1 A6LIT1_PARD8 21 265 SEQADV 4QHZ GLY A 0 UNP A6LIT1 EXPRESSION TAG SEQADV 4QHZ GLY B 0 UNP A6LIT1 EXPRESSION TAG SEQADV 4QHZ GLY C 0 UNP A6LIT1 EXPRESSION TAG SEQADV 4QHZ GLY D 0 UNP A6LIT1 EXPRESSION TAG SEQRES 1 A 246 GLY ALA GLN ASP MLY MLY MLY GLU PHE MLY MSE PRO THR SEQRES 2 A 246 GLY TYR ALA GLY ILE THR HIS GLU MSE SER GLU PHE TYR SEQRES 3 A 246 GLU PRO VAL PRO PRO VAL VAL THR PRO GLY THR ASP LEU SEQRES 4 A 246 MLY GLY GLY GLY PHE THR ALA PRO SER ASP ALA ILE VAL SEQRES 5 A 246 LEU PHE ASP GLY MLY ASP LEU SER ALA TRP GLU SER VAL SEQRES 6 A 246 MLY GLY GLY ALA ALA GLU TRP ASP VAL HIS ASP GLY VAL SEQRES 7 A 246 PHE THR VAL ASN LYS MLY MLY GLY ASP ILE GLN THR MLY SEQRES 8 A 246 GLN MLY PHE ASN ASP PHE GLN MSE HIS ILE GLU TRP GLN SEQRES 9 A 246 VAL PRO THR ASN ILE THR GLY GLU SER GLN SER ARG GLY SEQRES 10 A 246 ASN SER GLY ILE PHE LEU GLN GLY MSE TYR GLU VAL GLN SEQRES 11 A 246 VAL LEU ASP CYS TYR ASN ASN PRO THR TYR VAL ASN GLY SEQRES 12 A 246 GLN THR GLY SER ILE TYR LYS GLN SER ILE PRO LEU ALA SEQRES 13 A 246 ASN ALA MSE ARG MLY PRO GLY GLU TRP ASN VAL TYR ASP SEQRES 14 A 246 ILE ILE TYR THR ALA PRO THR PHE LYS GLU ASP GLY SER SEQRES 15 A 246 TYR ARG THR HIS PRO THR VAL THR VAL ILE GLN ASN GLY SEQRES 16 A 246 VAL VAL LEU GLN ASN HIS THR THR ILE LEU GLY THR THR SEQRES 17 A 246 GLU TRP ILE GLY PHE PRO GLN VAL MLY MLY HIS GLY ALA SEQRES 18 A 246 GLY PRO ILE ILE LEU GLN SER HIS GLY ASP PRO SER GLU SEQRES 19 A 246 PRO ILE SER PHE ARG ASN ILE TRP ILE ARG GLU LEU SEQRES 1 B 246 GLY ALA GLN ASP MLY MLY MLY GLU PHE MLY MSE PRO THR SEQRES 2 B 246 GLY TYR ALA GLY ILE THR HIS GLU MSE SER GLU PHE TYR SEQRES 3 B 246 GLU PRO VAL PRO PRO VAL VAL THR PRO GLY THR ASP LEU SEQRES 4 B 246 MLY GLY GLY GLY PHE THR ALA PRO SER ASP ALA ILE VAL SEQRES 5 B 246 LEU PHE ASP GLY MLY ASP LEU SER ALA TRP GLU SER VAL SEQRES 6 B 246 MLY GLY GLY ALA ALA GLU TRP ASP VAL HIS ASP GLY VAL SEQRES 7 B 246 PHE THR VAL ASN LYS MLY MLY GLY ASP ILE GLN THR MLY SEQRES 8 B 246 GLN MLY PHE ASN ASP PHE GLN MSE HIS ILE GLU TRP GLN SEQRES 9 B 246 VAL PRO THR ASN ILE THR GLY GLU SER GLN SER ARG GLY SEQRES 10 B 246 ASN SER GLY ILE PHE LEU GLN GLY MSE TYR GLU VAL GLN SEQRES 11 B 246 VAL LEU ASP CYS TYR ASN ASN PRO THR TYR VAL ASN GLY SEQRES 12 B 246 GLN THR GLY SER ILE TYR LYS GLN SER ILE PRO LEU ALA SEQRES 13 B 246 ASN ALA MSE ARG MLY PRO GLY GLU TRP ASN VAL TYR ASP SEQRES 14 B 246 ILE ILE TYR THR ALA PRO THR PHE LYS GLU ASP GLY SER SEQRES 15 B 246 TYR ARG THR HIS PRO THR VAL THR VAL ILE GLN ASN GLY SEQRES 16 B 246 VAL VAL LEU GLN ASN HIS THR THR ILE LEU GLY THR THR SEQRES 17 B 246 GLU TRP ILE GLY PHE PRO GLN VAL MLY MLY HIS GLY ALA SEQRES 18 B 246 GLY PRO ILE ILE LEU GLN SER HIS GLY ASP PRO SER GLU SEQRES 19 B 246 PRO ILE SER PHE ARG ASN ILE TRP ILE ARG GLU LEU SEQRES 1 C 246 GLY ALA GLN ASP MLY MLY MLY GLU PHE MLY MSE PRO THR SEQRES 2 C 246 GLY TYR ALA GLY ILE THR HIS GLU MSE SER GLU PHE TYR SEQRES 3 C 246 GLU PRO VAL PRO PRO VAL VAL THR PRO GLY THR ASP LEU SEQRES 4 C 246 MLY GLY GLY GLY PHE THR ALA PRO SER ASP ALA ILE VAL SEQRES 5 C 246 LEU PHE ASP GLY MLY ASP LEU SER ALA TRP GLU SER VAL SEQRES 6 C 246 MLY GLY GLY ALA ALA GLU TRP ASP VAL HIS ASP GLY VAL SEQRES 7 C 246 PHE THR VAL ASN LYS MLY MLY GLY ASP ILE GLN THR MLY SEQRES 8 C 246 GLN MLY PHE ASN ASP PHE GLN MSE HIS ILE GLU TRP GLN SEQRES 9 C 246 VAL PRO THR ASN ILE THR GLY GLU SER GLN SER ARG GLY SEQRES 10 C 246 ASN SER GLY ILE PHE LEU GLN GLY MSE TYR GLU VAL GLN SEQRES 11 C 246 VAL LEU ASP CYS TYR ASN ASN PRO THR TYR VAL ASN GLY SEQRES 12 C 246 GLN THR GLY SER ILE TYR LYS GLN SER ILE PRO LEU ALA SEQRES 13 C 246 ASN ALA MSE ARG MLY PRO GLY GLU TRP ASN VAL TYR ASP SEQRES 14 C 246 ILE ILE TYR THR ALA PRO THR PHE LYS GLU ASP GLY SER SEQRES 15 C 246 TYR ARG THR HIS PRO THR VAL THR VAL ILE GLN ASN GLY SEQRES 16 C 246 VAL VAL LEU GLN ASN HIS THR THR ILE LEU GLY THR THR SEQRES 17 C 246 GLU TRP ILE GLY PHE PRO GLN VAL MLY MLY HIS GLY ALA SEQRES 18 C 246 GLY PRO ILE ILE LEU GLN SER HIS GLY ASP PRO SER GLU SEQRES 19 C 246 PRO ILE SER PHE ARG ASN ILE TRP ILE ARG GLU LEU SEQRES 1 D 246 GLY ALA GLN ASP MLY MLY MLY GLU PHE MLY MSE PRO THR SEQRES 2 D 246 GLY TYR ALA GLY ILE THR HIS GLU MSE SER GLU PHE TYR SEQRES 3 D 246 GLU PRO VAL PRO PRO VAL VAL THR PRO GLY THR ASP LEU SEQRES 4 D 246 MLY GLY GLY GLY PHE THR ALA PRO SER ASP ALA ILE VAL SEQRES 5 D 246 LEU PHE ASP GLY MLY ASP LEU SER ALA TRP GLU SER VAL SEQRES 6 D 246 MLY GLY GLY ALA ALA GLU TRP ASP VAL HIS ASP GLY VAL SEQRES 7 D 246 PHE THR VAL ASN LYS MLY MLY GLY ASP ILE GLN THR MLY SEQRES 8 D 246 GLN MLY PHE ASN ASP PHE GLN MSE HIS ILE GLU TRP GLN SEQRES 9 D 246 VAL PRO THR ASN ILE THR GLY GLU SER GLN SER ARG GLY SEQRES 10 D 246 ASN SER GLY ILE PHE LEU GLN GLY MSE TYR GLU VAL GLN SEQRES 11 D 246 VAL LEU ASP CYS TYR ASN ASN PRO THR TYR VAL ASN GLY SEQRES 12 D 246 GLN THR GLY SER ILE TYR LYS GLN SER ILE PRO LEU ALA SEQRES 13 D 246 ASN ALA MSE ARG MLY PRO GLY GLU TRP ASN VAL TYR ASP SEQRES 14 D 246 ILE ILE TYR THR ALA PRO THR PHE LYS GLU ASP GLY SER SEQRES 15 D 246 TYR ARG THR HIS PRO THR VAL THR VAL ILE GLN ASN GLY SEQRES 16 D 246 VAL VAL LEU GLN ASN HIS THR THR ILE LEU GLY THR THR SEQRES 17 D 246 GLU TRP ILE GLY PHE PRO GLN VAL MLY MLY HIS GLY ALA SEQRES 18 D 246 GLY PRO ILE ILE LEU GLN SER HIS GLY ASP PRO SER GLU SEQRES 19 D 246 PRO ILE SER PHE ARG ASN ILE TRP ILE ARG GLU LEU MODRES 4QHZ MSE A 30 MET SELENOMETHIONINE MODRES 4QHZ MSE A 41 MET SELENOMETHIONINE MODRES 4QHZ MLY A 59 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 76 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 85 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 103 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 104 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 110 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 112 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE A 118 MET SELENOMETHIONINE MODRES 4QHZ MSE A 145 MET SELENOMETHIONINE MODRES 4QHZ MSE A 178 MET SELENOMETHIONINE MODRES 4QHZ MLY A 180 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 236 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY A 237 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE B 30 MET SELENOMETHIONINE MODRES 4QHZ MSE B 41 MET SELENOMETHIONINE MODRES 4QHZ MLY B 59 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 76 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 85 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 103 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 104 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 110 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 112 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE B 118 MET SELENOMETHIONINE MODRES 4QHZ MSE B 145 MET SELENOMETHIONINE MODRES 4QHZ MSE B 178 MET SELENOMETHIONINE MODRES 4QHZ MLY B 180 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 236 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY B 237 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 26 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 29 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE C 30 MET SELENOMETHIONINE MODRES 4QHZ MSE C 41 MET SELENOMETHIONINE MODRES 4QHZ MLY C 59 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 76 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 85 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 103 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 104 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 110 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 112 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE C 118 MET SELENOMETHIONINE MODRES 4QHZ MSE C 145 MET SELENOMETHIONINE MODRES 4QHZ MSE C 178 MET SELENOMETHIONINE MODRES 4QHZ MLY C 180 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 236 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY C 237 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 26 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 29 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE D 30 MET SELENOMETHIONINE MODRES 4QHZ MSE D 41 MET SELENOMETHIONINE MODRES 4QHZ MLY D 59 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 76 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 85 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 103 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 104 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 110 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 112 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MSE D 118 MET SELENOMETHIONINE MODRES 4QHZ MSE D 145 MET SELENOMETHIONINE MODRES 4QHZ MSE D 178 MET SELENOMETHIONINE MODRES 4QHZ MLY D 180 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 236 LYS N-DIMETHYL-LYSINE MODRES 4QHZ MLY D 237 LYS N-DIMETHYL-LYSINE HET MSE A 30 8 HET MSE A 41 8 HET MLY A 59 11 HET MLY A 76 7 HET MLY A 85 11 HET MLY A 103 11 HET MLY A 104 11 HET MLY A 110 11 HET MLY A 112 11 HET MSE A 118 8 HET MSE A 145 8 HET MSE A 178 8 HET MLY A 180 11 HET MLY A 236 11 HET MLY A 237 11 HET MSE B 30 5 HET MSE B 41 8 HET MLY B 59 11 HET MLY B 76 11 HET MLY B 85 11 HET MLY B 103 11 HET MLY B 104 19 HET MLY B 110 11 HET MLY B 112 11 HET MSE B 118 8 HET MSE B 145 8 HET MSE B 178 8 HET MLY B 180 11 HET MLY B 236 11 HET MLY B 237 11 HET MLY C 26 5 HET MLY C 29 11 HET MSE C 30 8 HET MSE C 41 8 HET MLY C 59 11 HET MLY C 76 11 HET MLY C 85 11 HET MLY C 103 11 HET MLY C 104 11 HET MLY C 110 11 HET MLY C 112 11 HET MSE C 118 8 HET MSE C 145 8 HET MSE C 178 8 HET MLY C 180 11 HET MLY C 236 11 HET MLY C 237 11 HET MLY D 26 5 HET MLY D 29 11 HET MSE D 30 5 HET MSE D 41 8 HET MLY D 59 11 HET MLY D 76 11 HET MLY D 85 11 HET MLY D 103 11 HET MLY D 104 11 HET MLY D 110 11 HET MLY D 112 11 HET MSE D 118 8 HET MSE D 145 8 HET MSE D 178 8 HET MLY D 180 11 HET MLY D 236 11 HET MLY D 237 11 HET EDO A 301 4 HET MG A 302 1 HET MG B 301 1 HET EDO C 301 4 HET MG C 302 1 HET EDO D 301 4 HET MG D 302 1 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 1 MLY 44(C8 H18 N2 O2) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 6 MG 4(MG 2+) FORMUL 12 HOH *910(H2 O) HELIX 1 1 GLY A 33 ILE A 37 5 5 HELIX 2 2 THR A 38 GLU A 43 5 6 HELIX 3 3 GLU A 131 ARG A 135 5 5 HELIX 4 4 GLN A 143 MSE A 145 5 3 HELIX 5 5 TYR A 159 GLN A 163 5 5 HELIX 6 6 GLY B 33 ILE B 37 5 5 HELIX 7 7 THR B 38 GLU B 43 5 6 HELIX 8 8 GLU B 131 ARG B 135 5 5 HELIX 9 9 GLN B 143 MSE B 145 5 3 HELIX 10 10 TYR B 159 GLN B 163 5 5 HELIX 11 11 GLY C 33 ILE C 37 5 5 HELIX 12 12 THR C 38 GLU C 43 5 6 HELIX 13 13 GLU C 131 ARG C 135 5 5 HELIX 14 14 GLN C 143 MSE C 145 5 3 HELIX 15 15 TYR C 159 GLN C 163 5 5 HELIX 16 16 GLY D 33 ILE D 37 5 5 HELIX 17 17 THR D 38 GLU D 43 5 6 HELIX 18 18 GLU D 131 ARG D 135 5 5 HELIX 19 19 GLN D 143 MSE D 145 5 3 HELIX 20 20 TYR D 159 GLN D 163 5 5 SHEET 1 A 4 ILE A 70 PHE A 73 0 SHEET 2 A 4 SER A 256 GLU A 264 -1 O ILE A 262 N ILE A 70 SHEET 3 A 4 VAL A 97 THR A 99 -1 N PHE A 98 O PHE A 257 SHEET 4 A 4 ASP A 92 HIS A 94 -1 N HIS A 94 O VAL A 97 SHEET 1 B 6 ILE A 70 PHE A 73 0 SHEET 2 B 6 SER A 256 GLU A 264 -1 O ILE A 262 N ILE A 70 SHEET 3 B 6 PHE A 116 GLN A 123 -1 N HIS A 119 O TRP A 261 SHEET 4 B 6 TRP A 184 THR A 192 -1 O ASN A 185 N TRP A 122 SHEET 5 B 6 THR A 207 GLN A 212 -1 O THR A 207 N THR A 192 SHEET 6 B 6 VAL A 215 THR A 222 -1 O LEU A 217 N VAL A 210 SHEET 1 C 5 TRP A 81 SER A 83 0 SHEET 2 C 5 ILE A 107 THR A 109 -1 O GLN A 108 N GLU A 82 SHEET 3 C 5 ILE A 244 LEU A 245 -1 O LEU A 245 N ILE A 107 SHEET 4 C 5 SER A 138 LEU A 142 -1 N PHE A 141 O ILE A 244 SHEET 5 C 5 TYR A 146 VAL A 150 -1 O TYR A 146 N LEU A 142 SHEET 1 D 2 THR A 195 PHE A 196 0 SHEET 2 D 2 TYR A 202 THR A 204 -1 O ARG A 203 N THR A 195 SHEET 1 E 4 ILE B 70 PHE B 73 0 SHEET 2 E 4 SER B 256 GLU B 264 -1 O ILE B 262 N ILE B 70 SHEET 3 E 4 VAL B 97 THR B 99 -1 N PHE B 98 O PHE B 257 SHEET 4 E 4 ASP B 92 HIS B 94 -1 N HIS B 94 O VAL B 97 SHEET 1 F 6 ILE B 70 PHE B 73 0 SHEET 2 F 6 SER B 256 GLU B 264 -1 O ILE B 262 N ILE B 70 SHEET 3 F 6 PHE B 116 GLN B 123 -1 N HIS B 119 O TRP B 261 SHEET 4 F 6 TRP B 184 THR B 192 -1 O TYR B 191 N PHE B 116 SHEET 5 F 6 THR B 207 GLN B 212 -1 O THR B 207 N THR B 192 SHEET 6 F 6 VAL B 215 THR B 222 -1 O LEU B 217 N VAL B 210 SHEET 1 G 5 TRP B 81 SER B 83 0 SHEET 2 G 5 ILE B 107 THR B 109 -1 O GLN B 108 N GLU B 82 SHEET 3 G 5 ILE B 244 LEU B 245 -1 O LEU B 245 N ILE B 107 SHEET 4 G 5 SER B 138 LEU B 142 -1 N PHE B 141 O ILE B 244 SHEET 5 G 5 TYR B 146 VAL B 150 -1 O TYR B 146 N LEU B 142 SHEET 1 H 2 THR B 195 PHE B 196 0 SHEET 2 H 2 TYR B 202 THR B 204 -1 O ARG B 203 N THR B 195 SHEET 1 I 4 ILE C 70 PHE C 73 0 SHEET 2 I 4 SER C 256 GLU C 264 -1 O ILE C 262 N ILE C 70 SHEET 3 I 4 VAL C 97 THR C 99 -1 N PHE C 98 O PHE C 257 SHEET 4 I 4 ASP C 92 HIS C 94 -1 N HIS C 94 O VAL C 97 SHEET 1 J 6 ILE C 70 PHE C 73 0 SHEET 2 J 6 SER C 256 GLU C 264 -1 O ILE C 262 N ILE C 70 SHEET 3 J 6 PHE C 116 GLN C 123 -1 N HIS C 119 O TRP C 261 SHEET 4 J 6 TRP C 184 THR C 192 -1 O ASN C 185 N TRP C 122 SHEET 5 J 6 THR C 207 GLN C 212 -1 O THR C 207 N THR C 192 SHEET 6 J 6 VAL C 215 THR C 222 -1 O LEU C 217 N VAL C 210 SHEET 1 K 5 TRP C 81 SER C 83 0 SHEET 2 K 5 ILE C 107 THR C 109 -1 O GLN C 108 N GLU C 82 SHEET 3 K 5 ILE C 244 LEU C 245 -1 O LEU C 245 N ILE C 107 SHEET 4 K 5 SER C 138 LEU C 142 -1 N PHE C 141 O ILE C 244 SHEET 5 K 5 TYR C 146 VAL C 150 -1 O TYR C 146 N LEU C 142 SHEET 1 L 2 THR C 195 PHE C 196 0 SHEET 2 L 2 TYR C 202 THR C 204 -1 O ARG C 203 N THR C 195 SHEET 1 M 4 ILE D 70 PHE D 73 0 SHEET 2 M 4 SER D 256 GLU D 264 -1 O ILE D 262 N ILE D 70 SHEET 3 M 4 VAL D 97 THR D 99 -1 N PHE D 98 O PHE D 257 SHEET 4 M 4 ASP D 92 HIS D 94 -1 N HIS D 94 O VAL D 97 SHEET 1 N 6 ILE D 70 PHE D 73 0 SHEET 2 N 6 SER D 256 GLU D 264 -1 O ILE D 262 N ILE D 70 SHEET 3 N 6 PHE D 116 GLN D 123 -1 N HIS D 119 O TRP D 261 SHEET 4 N 6 TRP D 184 THR D 192 -1 O TYR D 191 N PHE D 116 SHEET 5 N 6 THR D 207 GLN D 212 -1 O THR D 207 N THR D 192 SHEET 6 N 6 VAL D 215 THR D 222 -1 O VAL D 215 N GLN D 212 SHEET 1 O 5 TRP D 81 SER D 83 0 SHEET 2 O 5 ILE D 107 THR D 109 -1 O GLN D 108 N GLU D 82 SHEET 3 O 5 ILE D 244 LEU D 245 -1 O LEU D 245 N ILE D 107 SHEET 4 O 5 SER D 138 LEU D 142 -1 N PHE D 141 O ILE D 244 SHEET 5 O 5 TYR D 146 VAL D 150 -1 O TYR D 146 N LEU D 142 SHEET 1 P 2 THR D 195 PHE D 196 0 SHEET 2 P 2 TYR D 202 THR D 204 -1 O ARG D 203 N THR D 195 LINK C MSE A 30 N PRO A 31 1555 1555 1.35 LINK C GLU A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N SER A 42 1555 1555 1.34 LINK C LEU A 58 N MLY A 59 1555 1555 1.33 LINK C MLY A 59 N GLY A 60 1555 1555 1.33 LINK C GLY A 75 N MLY A 76 1555 1555 1.33 LINK C MLY A 76 N ASP A 77 1555 1555 1.33 LINK C VAL A 84 N MLY A 85 1555 1555 1.33 LINK C MLY A 85 N GLY A 86 1555 1555 1.33 LINK C LYS A 102 N MLY A 103 1555 1555 1.33 LINK C MLY A 103 N MLY A 104 1555 1555 1.33 LINK C MLY A 104 N GLY A 105 1555 1555 1.33 LINK C THR A 109 N MLY A 110 1555 1555 1.33 LINK C MLY A 110 N GLN A 111 1555 1555 1.33 LINK C GLN A 111 N MLY A 112 1555 1555 1.33 LINK C MLY A 112 N PHE A 113 1555 1555 1.33 LINK C GLN A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N HIS A 119 1555 1555 1.33 LINK C GLY A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N TYR A 146 1555 1555 1.33 LINK C ALA A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N ARG A 179 1555 1555 1.33 LINK C ARG A 179 N MLY A 180 1555 1555 1.33 LINK C MLY A 180 N PRO A 181 1555 1555 1.35 LINK C VAL A 235 N MLY A 236 1555 1555 1.33 LINK C MLY A 236 N MLY A 237 1555 1555 1.33 LINK C MLY A 237 N HIS A 238 1555 1555 1.32 LINK C MSE B 30 N PRO B 31 1555 1555 1.34 LINK C GLU B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N SER B 42 1555 1555 1.34 LINK C LEU B 58 N MLY B 59 1555 1555 1.33 LINK C MLY B 59 N GLY B 60 1555 1555 1.33 LINK C GLY B 75 N MLY B 76 1555 1555 1.33 LINK C MLY B 76 N ASP B 77 1555 1555 1.33 LINK C VAL B 84 N MLY B 85 1555 1555 1.33 LINK C MLY B 85 N GLY B 86 1555 1555 1.33 LINK C LYS B 102 N MLY B 103 1555 1555 1.33 LINK C MLY B 103 N MLY B 104 1555 1555 1.33 LINK C MLY B 104 N GLY B 105 1555 1555 1.33 LINK C THR B 109 N MLY B 110 1555 1555 1.33 LINK C MLY B 110 N GLN B 111 1555 1555 1.33 LINK C GLN B 111 N MLY B 112 1555 1555 1.33 LINK C MLY B 112 N PHE B 113 1555 1555 1.33 LINK C GLN B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N HIS B 119 1555 1555 1.33 LINK C GLY B 144 N MSE B 145 1555 1555 1.34 LINK C MSE B 145 N TYR B 146 1555 1555 1.33 LINK C ALA B 177 N MSE B 178 1555 1555 1.33 LINK C MSE B 178 N ARG B 179 1555 1555 1.33 LINK C ARG B 179 N MLY B 180 1555 1555 1.33 LINK C MLY B 180 N PRO B 181 1555 1555 1.35 LINK C VAL B 235 N MLY B 236 1555 1555 1.33 LINK C MLY B 236 N MLY B 237 1555 1555 1.33 LINK C MLY B 237 N HIS B 238 1555 1555 1.33 LINK C MLY C 26 N GLU C 27 1555 1555 1.33 LINK C PHE C 28 N MLY C 29 1555 1555 1.33 LINK C MLY C 29 N MSE C 30 1555 1555 1.33 LINK C MSE C 30 N PRO C 31 1555 1555 1.35 LINK C GLU C 40 N MSE C 41 1555 1555 1.33 LINK C MSE C 41 N SER C 42 1555 1555 1.34 LINK C LEU C 58 N MLY C 59 1555 1555 1.33 LINK C MLY C 59 N GLY C 60 1555 1555 1.33 LINK C GLY C 75 N MLY C 76 1555 1555 1.33 LINK C MLY C 76 N ASP C 77 1555 1555 1.33 LINK C VAL C 84 N MLY C 85 1555 1555 1.34 LINK C MLY C 85 N GLY C 86 1555 1555 1.33 LINK C LYS C 102 N MLY C 103 1555 1555 1.33 LINK C MLY C 103 N MLY C 104 1555 1555 1.33 LINK C MLY C 104 N GLY C 105 1555 1555 1.33 LINK C THR C 109 N MLY C 110 1555 1555 1.33 LINK C MLY C 110 N GLN C 111 1555 1555 1.33 LINK C GLN C 111 N MLY C 112 1555 1555 1.34 LINK C MLY C 112 N PHE C 113 1555 1555 1.33 LINK C GLN C 117 N MSE C 118 1555 1555 1.33 LINK C MSE C 118 N HIS C 119 1555 1555 1.33 LINK C GLY C 144 N MSE C 145 1555 1555 1.34 LINK C MSE C 145 N TYR C 146 1555 1555 1.33 LINK C ALA C 177 N MSE C 178 1555 1555 1.33 LINK C MSE C 178 N ARG C 179 1555 1555 1.33 LINK C ARG C 179 N MLY C 180 1555 1555 1.33 LINK C MLY C 180 N PRO C 181 1555 1555 1.34 LINK C VAL C 235 N MLY C 236 1555 1555 1.33 LINK C MLY C 236 N MLY C 237 1555 1555 1.33 LINK C MLY C 237 N HIS C 238 1555 1555 1.33 LINK C MLY D 26 N GLU D 27 1555 1555 1.33 LINK C PHE D 28 N MLY D 29 1555 1555 1.33 LINK C MLY D 29 N MSE D 30 1555 1555 1.33 LINK C MSE D 30 N PRO D 31 1555 1555 1.35 LINK C GLU D 40 N MSE D 41 1555 1555 1.33 LINK C MSE D 41 N SER D 42 1555 1555 1.34 LINK C LEU D 58 N MLY D 59 1555 1555 1.33 LINK C MLY D 59 N GLY D 60 1555 1555 1.33 LINK C GLY D 75 N MLY D 76 1555 1555 1.33 LINK C MLY D 76 N ASP D 77 1555 1555 1.33 LINK C VAL D 84 N MLY D 85 1555 1555 1.34 LINK C MLY D 85 N GLY D 86 1555 1555 1.34 LINK C LYS D 102 N MLY D 103 1555 1555 1.33 LINK C MLY D 103 N MLY D 104 1555 1555 1.33 LINK C MLY D 104 N GLY D 105 1555 1555 1.33 LINK C THR D 109 N MLY D 110 1555 1555 1.33 LINK C MLY D 110 N GLN D 111 1555 1555 1.33 LINK C GLN D 111 N MLY D 112 1555 1555 1.33 LINK C MLY D 112 N PHE D 113 1555 1555 1.33 LINK C GLN D 117 N MSE D 118 1555 1555 1.33 LINK C MSE D 118 N HIS D 119 1555 1555 1.33 LINK C GLY D 144 N MSE D 145 1555 1555 1.34 LINK C MSE D 145 N TYR D 146 1555 1555 1.33 LINK C ALA D 177 N MSE D 178 1555 1555 1.33 LINK C MSE D 178 N ARG D 179 1555 1555 1.33 LINK C ARG D 179 N MLY D 180 1555 1555 1.33 LINK C MLY D 180 N PRO D 181 1555 1555 1.35 LINK C VAL D 235 N MLY D 236 1555 1555 1.33 LINK C MLY D 236 N MLY D 237 1555 1555 1.33 LINK C MLY D 237 N HIS D 238 1555 1555 1.33 LINK OD1 ASN A 137 MG MG A 302 1555 1555 2.16 LINK O SER A 138 MG MG A 302 1555 1555 2.08 LINK OE2 GLU A 147 MG MG A 302 1555 1555 2.09 LINK OE1 GLN A 149 MG MG A 302 1555 1555 2.16 LINK OE1 GLN A 246 MG MG A 302 1555 1555 2.09 LINK MG MG A 302 O HOH A 401 1555 1555 2.01 LINK OD1 ASN B 137 MG MG B 301 1555 1555 2.04 LINK O SER B 138 MG MG B 301 1555 1555 2.06 LINK OE2 GLU B 147 MG MG B 301 1555 1555 2.22 LINK OE1 GLN B 149 MG MG B 301 1555 1555 2.07 LINK OE1 GLN B 246 MG MG B 301 1555 1555 2.19 LINK MG MG B 301 O HOH B 401 1555 1555 2.03 LINK OD1 ASN C 137 MG MG C 302 1555 1555 2.06 LINK O SER C 138 MG MG C 302 1555 1555 2.22 LINK OE2 GLU C 147 MG MG C 302 1555 1555 2.23 LINK OE1 GLN C 149 MG MG C 302 1555 1555 2.15 LINK OE1 GLN C 246 MG MG C 302 1555 1555 2.15 LINK MG MG C 302 O HOH C 401 1555 1555 1.96 LINK OD1 ASN D 137 MG MG D 302 1555 1555 2.16 LINK O SER D 138 MG MG D 302 1555 1555 2.28 LINK OE2 GLU D 147 MG MG D 302 1555 1555 2.14 LINK OE1 GLN D 149 MG MG D 302 1555 1555 2.16 LINK OE1 GLN D 246 MG MG D 302 1555 1555 2.14 LINK MG MG D 302 O HOH D 401 1555 1555 2.01 CISPEP 1 GLU A 46 PRO A 47 0 -2.03 CISPEP 2 GLU B 46 PRO B 47 0 -3.91 CISPEP 3 GLU C 46 PRO C 47 0 -4.63 CISPEP 4 GLU D 46 PRO D 47 0 -2.83 SITE 1 AC1 5 ASP A 188 ILE A 211 HOH A 411 ASP B 188 SITE 2 AC1 5 HOH B 417 SITE 1 AC2 6 ASN A 137 SER A 138 GLU A 147 GLN A 149 SITE 2 AC2 6 GLN A 246 HOH A 401 SITE 1 AC3 6 ASN B 137 SER B 138 GLU B 147 GLN B 149 SITE 2 AC3 6 GLN B 246 HOH B 401 SITE 1 AC4 6 ASP C 188 ILE C 211 HOH C 423 PHE D 63 SITE 2 AC4 6 ASP D 188 ILE D 211 SITE 1 AC5 6 ASN C 137 SER C 138 GLU C 147 GLN C 149 SITE 2 AC5 6 GLN C 246 HOH C 401 SITE 1 AC6 3 LEU D 224 HOH D 517 HOH D 573 SITE 1 AC7 6 ASN D 137 SER D 138 GLU D 147 GLN D 149 SITE 2 AC7 6 GLN D 246 HOH D 401 CRYST1 47.774 144.763 82.452 90.00 101.27 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020932 0.000000 0.004170 0.00000 SCALE2 0.000000 0.006908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012367 0.00000 HETATM 1 N MSE A 30 12.687 125.353 21.839 1.00 57.07 N ANISOU 1 N MSE A 30 8453 5528 7702 -1051 651 75 N HETATM 2 CA MSE A 30 11.908 124.074 21.853 1.00 60.35 C ANISOU 2 CA MSE A 30 8805 6048 8077 -957 615 76 C HETATM 3 C MSE A 30 12.411 123.220 20.726 1.00 55.14 C ANISOU 3 C MSE A 30 8069 5454 7427 -949 646 125 C HETATM 4 O MSE A 30 12.418 123.681 19.595 1.00 51.98 O ANISOU 4 O MSE A 30 7716 5011 7021 -934 707 175 O HETATM 5 CB MSE A 30 10.403 124.313 21.657 1.00 64.92 C ANISOU 5 CB MSE A 30 9466 6601 8597 -838 620 87 C HETATM 6 CG MSE A 30 9.679 124.668 22.954 1.00 74.33 C ANISOU 6 CG MSE A 30 10707 7766 9768 -817 576 31 C HETATM 7 SE MSE A 30 9.617 123.199 24.283 0.75 91.75 SE ANISOU 7 SE MSE A 30 12798 10096 11964 -812 490 -25 SE HETATM 8 CE MSE A 30 9.553 121.550 23.211 1.00 79.41 C ANISOU 8 CE MSE A 30 11119 8662 10390 -750 490 22 C