HEADER OXIDOREDUCTASE 30-MAY-14 4QI4 TITLE DEHYDROGENASE DOMAIN OF MYRIOCOCCUM THERMOPHILUM CELLOBIOSE TITLE 2 DEHYDROGENASE, MTDH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLOBIOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYRIOCOCCUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 455373; SOURCE 4 STRAIN: CBS 208.89; SOURCE 5 GENE: CDH; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZ B KEYWDS FAD/NAD(P)-BINDING DOMAIN, CELLOBIOSE OXIDIZING, ELECTRON TRANSFER, KEYWDS 2 LIGNOCELLULOSE DEGRADATION, CDH CYTOCHROME DOMAIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.TAN,R.GANDINI,C.SYGMUND,R.KITTL,D.HALTRICH,R.LUDWIG,B.M.HALLBERG, AUTHOR 2 C.DIVNE REVDAT 5 06-NOV-24 4QI4 1 HETSYN REVDAT 4 29-JUL-20 4QI4 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 07-MAR-18 4QI4 1 JRNL REVDAT 2 21-FEB-18 4QI4 1 TITLE JRNL REVDAT 1 15-JUL-15 4QI4 0 JRNL AUTH T.C.TAN,D.KRACHER,R.GANDINI,C.SYGMUND,R.KITTL,D.HALTRICH, JRNL AUTH 2 B.M.HALLBERG,R.LUDWIG,C.DIVNE JRNL TITL STRUCTURAL BASIS FOR CELLOBIOSE DEHYDROGENASE ACTION DURING JRNL TITL 2 OXIDATIVE CELLULOSE DEGRADATION. JRNL REF NAT COMMUN V. 6 7542 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26151670 JRNL DOI 10.1038/NCOMMS8542 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1477) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3246 - 6.5012 1.00 2340 141 0.1696 0.2092 REMARK 3 2 6.5012 - 5.1627 1.00 2281 138 0.1680 0.2062 REMARK 3 3 5.1627 - 4.5108 1.00 2270 140 0.1357 0.2022 REMARK 3 4 4.5108 - 4.0987 1.00 2254 147 0.1349 0.1810 REMARK 3 5 4.0987 - 3.8051 1.00 2241 145 0.1558 0.1890 REMARK 3 6 3.8051 - 3.5809 1.00 2244 145 0.1673 0.2260 REMARK 3 7 3.5809 - 3.4016 1.00 2259 140 0.2049 0.2623 REMARK 3 8 3.4016 - 3.2536 1.00 2236 141 0.2189 0.2808 REMARK 3 9 3.2536 - 3.1284 1.00 2239 145 0.2281 0.2765 REMARK 3 10 3.1284 - 3.0204 1.00 2235 144 0.2491 0.3087 REMARK 3 11 3.0204 - 2.9260 1.00 2243 143 0.2752 0.3504 REMARK 3 12 2.9260 - 2.8424 1.00 2228 139 0.3031 0.3577 REMARK 3 13 2.8424 - 2.7676 1.00 2216 143 0.3263 0.3888 REMARK 3 14 2.7676 - 2.7001 1.00 2242 140 0.3411 0.4039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4712 REMARK 3 ANGLE : 1.390 6429 REMARK 3 CHIRALITY : 0.057 710 REMARK 3 PLANARITY : 0.007 832 REMARK 3 DIHEDRAL : 14.477 1653 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.9734 -18.8998 -25.9207 REMARK 3 T TENSOR REMARK 3 T11: 0.7063 T22: 0.3209 REMARK 3 T33: 0.4881 T12: 0.0026 REMARK 3 T13: -0.0772 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.7203 L22: 2.2907 REMARK 3 L33: 1.4713 L12: 0.6709 REMARK 3 L13: -0.5786 L23: -0.8854 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0673 S13: 0.1179 REMARK 3 S21: -0.2160 S22: 0.1245 S23: 0.3386 REMARK 3 S31: -0.3197 S32: -0.0786 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 493 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.8485 -16.1852 -24.6860 REMARK 3 T TENSOR REMARK 3 T11: 0.7511 T22: 0.3236 REMARK 3 T33: 0.4183 T12: -0.1129 REMARK 3 T13: -0.0677 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.1270 L22: 1.7508 REMARK 3 L33: 0.8698 L12: 0.5928 REMARK 3 L13: -0.4671 L23: 0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: 0.0056 S13: 0.0235 REMARK 3 S21: -0.1021 S22: -0.1000 S23: -0.2342 REMARK 3 S31: -0.3783 S32: 0.1544 S33: -0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 593 THROUGH 648 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.1907 -20.7334 -24.3180 REMARK 3 T TENSOR REMARK 3 T11: 0.8961 T22: 0.5103 REMARK 3 T33: 0.7010 T12: -0.2272 REMARK 3 T13: -0.0231 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: -0.1844 L22: 0.3316 REMARK 3 L33: -0.1408 L12: 0.4568 REMARK 3 L13: -0.3068 L23: -0.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.1521 S13: 0.0561 REMARK 3 S21: 0.1589 S22: -0.2012 S23: -0.7307 REMARK 3 S31: -0.4251 S32: 0.4357 S33: -0.0062 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 649 THROUGH 749 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.5405 -26.6126 -24.8894 REMARK 3 T TENSOR REMARK 3 T11: 0.5628 T22: 0.3551 REMARK 3 T33: 0.5855 T12: -0.1263 REMARK 3 T13: 0.0636 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.3039 L22: 0.3954 REMARK 3 L33: 0.5033 L12: -0.1227 REMARK 3 L13: 0.3079 L23: -0.1147 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: -0.1525 S13: -0.1880 REMARK 3 S21: -0.0625 S22: -0.1650 S23: -0.3019 REMARK 3 S31: -0.3683 S32: 0.2339 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 750 THROUGH 807 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.8858 -39.0378 -7.0177 REMARK 3 T TENSOR REMARK 3 T11: 0.5534 T22: 0.5428 REMARK 3 T33: 0.4995 T12: -0.0172 REMARK 3 T13: -0.0173 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 0.7535 L22: 0.9348 REMARK 3 L33: 0.2148 L12: -0.2609 REMARK 3 L13: 0.0088 L23: 0.2361 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.2755 S13: -0.1097 REMARK 3 S21: 0.2026 S22: 0.0043 S23: 0.2073 REMARK 3 S31: -0.0551 S32: -0.0472 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAAC PH 4.6, 0.1 M CDCL2, 18% REMARK 280 (W/V) PEG MONOMETHYLETHER 550, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.01500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.01500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 85.87750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -148.74419 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 171.75500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 911 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 913 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 678 OG1 THR A 680 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 565 O - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 264 -75.08 -115.20 REMARK 500 ASN A 416 -118.21 61.39 REMARK 500 ASN A 437 29.07 49.78 REMARK 500 VAL A 472 -57.04 69.91 REMARK 500 ASP A 554 71.92 -116.22 REMARK 500 PRO A 576 -168.01 -73.86 REMARK 500 GLU A 603 153.33 178.11 REMARK 500 SER A 605 -61.75 -133.79 REMARK 500 ASN A 671 -1.35 77.05 REMARK 500 ASP A 737 -172.17 -177.39 REMARK 500 TYR A 776 -7.74 82.56 REMARK 500 GLN A 799 -62.08 -127.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 359 THR A 360 143.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 356 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 908 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 456 OE2 REMARK 620 2 GLU A 456 OE1 60.8 REMARK 620 3 LYS A 508 NZ 168.7 115.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 915 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 550 OE2 REMARK 620 2 GLU A 550 OE1 53.4 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QI3 RELATED DB: PDB REMARK 900 RELATED ID: 4QI5 RELATED DB: PDB REMARK 900 RELATED ID: 4QI6 RELATED DB: PDB REMARK 900 RELATED ID: 4QI7 RELATED DB: PDB REMARK 900 RELATED ID: 4QI8 RELATED DB: PDB DBREF 4QI4 A 223 807 UNP A9XK88 A9XK88_9BASI 244 828 SEQRES 1 A 585 PRO VAL PRO THR GLY VAL SER PHE ASP TYR ILE VAL VAL SEQRES 2 A 585 GLY GLY GLY ALA GLY GLY ILE PRO ALA ALA ASP LYS LEU SEQRES 3 A 585 SER GLU ALA GLY LYS SER VAL LEU LEU ILE GLU LYS GLY SEQRES 4 A 585 PHE ALA SER THR ALA ASN THR GLY GLY THR LEU GLY PRO SEQRES 5 A 585 GLU TRP LEU GLU GLY HIS ASP LEU THR ARG PHE ASP VAL SEQRES 6 A 585 PRO GLY LEU CYS ASN GLN ILE TRP VAL ASP SER LYS GLY SEQRES 7 A 585 ILE ALA CYS GLU ASP THR ASP GLN MET ALA GLY CYS VAL SEQRES 8 A 585 LEU GLY GLY GLY THR ALA VAL ASN ALA GLY LEU TRP PHE SEQRES 9 A 585 LYS PRO TYR SER LEU ASP TRP ASP TYR LEU PHE PRO ASP SEQRES 10 A 585 GLY TRP LYS TYR ASN ASP VAL GLN PRO ALA ILE ASN ARG SEQRES 11 A 585 ALA LEU SER ARG ILE PRO GLY THR ASP ALA PRO SER THR SEQRES 12 A 585 ASP GLY LYS ARG TYR TYR GLN GLU GLY PHE GLU VAL LEU SEQRES 13 A 585 SER LYS GLY LEU ALA ALA GLY GLY TRP THR SER VAL THR SEQRES 14 A 585 ALA ASN ASN ALA PRO ASP LYS LYS ASN ARG THR PHE ALA SEQRES 15 A 585 HIS ALA PRO PHE MET PHE ALA GLY GLY GLU ARG ASN GLY SEQRES 16 A 585 PRO LEU GLY THR TYR PHE GLN THR ALA LYS LYS ARG ASN SEQRES 17 A 585 ASN PHE ASP VAL TRP LEU ASN THR SER VAL LYS ARG VAL SEQRES 18 A 585 ILE ARG GLU GLY GLY HIS ILE THR GLY VAL GLU VAL GLU SEQRES 19 A 585 PRO PHE ARG ASP GLY GLY TYR GLU GLY ILE VAL PRO VAL SEQRES 20 A 585 THR LYS VAL THR GLY ARG VAL ILE LEU SER ALA GLY THR SEQRES 21 A 585 PHE GLY SER ALA LYS ILE LEU LEU ARG SER GLY ILE GLY SEQRES 22 A 585 PRO GLU ASP GLN LEU GLU VAL VAL ALA ALA SER GLU LYS SEQRES 23 A 585 ASP GLY PRO THR MET ILE GLY ASN SER SER TRP ILE ASN SEQRES 24 A 585 LEU PRO VAL GLY TYR ASN LEU ASP ASP HIS LEU ASN THR SEQRES 25 A 585 ASP THR VAL ILE SER HIS PRO ASP VAL VAL PHE TYR ASP SEQRES 26 A 585 PHE TYR GLU ALA TRP ASP ASP PRO ILE GLU SER ASP LYS SEQRES 27 A 585 ASN SER TYR LEU GLU SER ARG THR GLY ILE LEU ALA GLN SEQRES 28 A 585 ALA ALA PRO ASN ILE GLY PRO MET PHE TRP GLU GLU ILE SEQRES 29 A 585 VAL GLY ALA ASP GLY ILE VAL ARG GLN LEU GLN TRP THR SEQRES 30 A 585 ALA ARG VAL GLU GLY SER LEU GLY ALA PRO ASN GLY HIS SEQRES 31 A 585 THR MET THR MET SER GLN TYR LEU GLY ARG GLY ALA THR SEQRES 32 A 585 SER ARG GLY ARG MET THR ILE THR PRO SER LEU THR THR SEQRES 33 A 585 ILE VAL SER ASP VAL PRO TYR LEU LYS ASP PRO ASN ASP SEQRES 34 A 585 LYS GLU ALA VAL ILE GLN GLY ILE ILE ASN LEU GLN ASN SEQRES 35 A 585 ALA LEU GLN ASN VAL ALA ASN LEU THR TRP LEU PHE PRO SEQRES 36 A 585 ASN SER THR ILE THR PRO ARG GLU TYR VAL GLU SER MET SEQRES 37 A 585 VAL VAL SER PRO SER ASN ARG ARG SER ASN HIS TRP MET SEQRES 38 A 585 GLY THR ASN LYS LEU GLY THR ASP ASP GLY ARG LYS GLY SEQRES 39 A 585 GLY SER ALA VAL VAL ASP LEU ASP THR ARG VAL TYR GLY SEQRES 40 A 585 THR ASP ASN LEU PHE VAL ILE ASP ALA SER ILE PHE PRO SEQRES 41 A 585 GLY VAL PRO THR THR ASN PRO THR SER TYR ILE VAL VAL SEQRES 42 A 585 ALA ALA GLU HIS ALA SER SER ARG ILE LEU ALA LEU PRO SEQRES 43 A 585 ASP LEU GLU PRO VAL PRO LYS TYR GLY GLN CYS GLY GLY SEQRES 44 A 585 ARG GLU TRP THR GLY SER PHE VAL CYS ALA ASP GLY SER SEQRES 45 A 585 THR CYS GLU TYR GLN ASN GLU TRP TYR SER GLN CYS LEU MODRES 4QI4 ASN A 437 ASN GLYCOSYLATION SITE MODRES 4QI4 ASN A 516 ASN GLYCOSYLATION SITE MODRES 4QI4 ASN A 400 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET FAD A 901 53 HET NAG A 906 14 HET CD A 907 1 HET CD A 908 1 HET CD A 909 1 HET CD A 910 1 HET CD A 911 1 HET CD A 912 1 HET CD A 913 1 HET CD A 914 1 HET CD A 915 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CD CADMIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 6 CD 9(CD 2+) HELIX 1 1 GLY A 240 GLU A 250 1 11 HELIX 2 2 THR A 265 GLY A 269 5 5 HELIX 3 3 PRO A 274 GLU A 278 5 5 HELIX 4 4 VAL A 287 CYS A 291 5 5 HELIX 5 5 ASN A 292 ASP A 297 1 6 HELIX 6 6 GLY A 316 ASN A 321 1 6 HELIX 7 7 TYR A 329 PHE A 337 1 9 HELIX 8 8 LYS A 342 ILE A 357 1 16 HELIX 9 9 GLN A 372 GLY A 385 1 14 HELIX 10 10 ASN A 416 THR A 421 1 6 HELIX 11 11 THR A 421 LYS A 428 1 8 HELIX 12 12 PHE A 483 ARG A 491 1 9 HELIX 13 13 PRO A 496 SER A 506 1 11 HELIX 14 14 GLY A 515 TRP A 519 5 5 HELIX 15 15 TYR A 549 ASP A 554 1 6 HELIX 16 16 ILE A 556 SER A 562 1 7 HELIX 17 17 GLY A 569 GLN A 573 5 5 HELIX 18 18 ASP A 648 GLN A 667 1 20 HELIX 19 19 THR A 682 SER A 689 1 8 HELIX 20 20 SER A 693 ARG A 698 1 6 HELIX 21 21 ASP A 712 GLY A 716 5 5 HELIX 22 22 ASP A 737 PHE A 741 5 5 HELIX 23 23 PRO A 749 LEU A 767 1 19 SHEET 1 A 5 PHE A 432 TRP A 435 0 SHEET 2 A 5 VAL A 255 ILE A 258 1 N LEU A 257 O ASP A 433 SHEET 3 A 5 TYR A 232 VAL A 235 1 N VAL A 234 O ILE A 258 SHEET 4 A 5 ARG A 475 LEU A 478 1 O ILE A 477 N ILE A 233 SHEET 5 A 5 LEU A 733 VAL A 735 1 O PHE A 734 N LEU A 478 SHEET 1 B 7 THR A 388 SER A 389 0 SHEET 2 B 7 THR A 402 ALA A 404 1 O PHE A 403 N THR A 388 SHEET 3 B 7 ILE A 578 VAL A 587 -1 O MET A 581 N ALA A 404 SHEET 4 B 7 VAL A 593 ARG A 601 -1 O TRP A 598 N PHE A 582 SHEET 5 B 7 THR A 613 LEU A 620 -1 O TYR A 619 N GLN A 597 SHEET 6 B 7 LEU A 532 SER A 539 -1 N THR A 536 O MET A 616 SHEET 7 B 7 THR A 673 PHE A 676 -1 O THR A 673 N SER A 539 SHEET 1 C 3 THR A 438 GLU A 446 0 SHEET 2 C 3 HIS A 449 PRO A 457 -1 O GLY A 452 N ILE A 444 SHEET 3 C 3 GLY A 465 PRO A 468 -1 O VAL A 467 N VAL A 453 SHEET 1 D 2 ARG A 629 ILE A 632 0 SHEET 2 D 2 THR A 638 ASP A 642 -1 O ILE A 639 N THR A 631 SHEET 1 E 3 GLN A 778 GLY A 780 0 SHEET 2 E 3 TYR A 803 LEU A 807 -1 O SER A 804 N CYS A 779 SHEET 3 E 3 THR A 795 ASN A 800 -1 N THR A 795 O LEU A 807 SSBOND 1 CYS A 303 CYS A 312 1555 1555 2.01 SSBOND 2 CYS A 779 CYS A 796 1555 1555 2.03 SSBOND 3 CYS A 790 CYS A 806 1555 1555 2.05 LINK ND2 ASN A 400 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 437 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 516 C1 NAG A 906 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK OE2 GLU A 278 CD CD A 914 1555 1555 2.04 LINK SG CYS A 291 CD CD A 909 1555 1555 2.93 LINK OE2 GLU A 304 CD CD A 912 1555 1555 2.12 LINK OD2 ASP A 339 CD CD A 907 1555 1555 2.06 LINK OE2 GLU A 456 CD CD A 908 1555 1555 2.13 LINK OE1 GLU A 456 CD CD A 908 1555 1555 2.20 LINK NZ LYS A 508 CD CD A 908 1555 1555 2.24 LINK OE2 GLU A 550 CD CD A 915 1555 1555 2.09 LINK OE1 GLU A 550 CD CD A 915 1555 1555 2.69 LINK NZ LYS A 715 CD CD A 913 1555 1555 2.55 LINK OE1 GLU A 783 CD CD A 911 1555 1555 2.44 CISPEP 1 ALA A 575 PRO A 576 0 -17.55 CISPEP 2 PHE A 676 PRO A 677 0 0.19 CRYST1 171.755 171.755 72.030 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005822 0.003361 0.000000 0.00000 SCALE2 0.000000 0.006723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013883 0.00000