HEADER OXIDOREDUCTASE 30-MAY-14 4QI5 TITLE DEHYDROGENASE DOMAIN OF MYRIOCOCCUM THERMOPHILUM CELLOBIOSE TITLE 2 DEHYDROGENASE WITH BOUND CELLOBIONOLACTAM, MTDH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLOBIOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYRIOCOCCUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 455373; SOURCE 4 STRAIN: CBS 208.89; SOURCE 5 GENE: CDH; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZ B KEYWDS FAD/NAD(P)-BINDING DOMAIN, CELLOBIOSE OXIDIZING, ELECTRON TRANSFER, KEYWDS 2 LIGNOCELLULOSE DEGRADATION, CDH CYTOCHROME DOMAIN, CELLOBIOSE, KEYWDS 3 CELLOBIONOLACTAM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.TAN,R.GANDINI,C.SYGMUND,R.KITTL,D.HALTRICH,R.LUDWIG,B.M.HALLBERG, AUTHOR 2 C.DIVNE REVDAT 6 20-NOV-24 4QI5 1 REMARK REVDAT 5 03-APR-24 4QI5 1 HETSYN REVDAT 4 29-JUL-20 4QI5 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 07-MAR-18 4QI5 1 JRNL REVDAT 2 21-FEB-18 4QI5 1 TITLE JRNL REVDAT 1 15-JUL-15 4QI5 0 JRNL AUTH T.C.TAN,D.KRACHER,R.GANDINI,C.SYGMUND,R.KITTL,D.HALTRICH, JRNL AUTH 2 B.M.HALLBERG,R.LUDWIG,C.DIVNE JRNL TITL STRUCTURAL BASIS FOR CELLOBIOSE DEHYDROGENASE ACTION DURING JRNL TITL 2 OXIDATIVE CELLULOSE DEGRADATION. JRNL REF NAT COMMUN V. 6 7542 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26151670 JRNL DOI 10.1038/NCOMMS8542 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1477) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4801 - 5.3349 1.00 4329 149 0.1566 0.1818 REMARK 3 2 5.3349 - 4.2355 1.00 4241 145 0.1337 0.1753 REMARK 3 3 4.2355 - 3.7004 1.00 4228 140 0.1627 0.2117 REMARK 3 4 3.7004 - 3.3622 1.00 4206 138 0.1906 0.2304 REMARK 3 5 3.3622 - 3.1213 1.00 4205 145 0.2249 0.3242 REMARK 3 6 3.1213 - 2.9373 1.00 4212 135 0.2413 0.3085 REMARK 3 7 2.9373 - 2.7902 1.00 4230 118 0.2534 0.3151 REMARK 3 8 2.7902 - 2.6688 1.00 4186 134 0.2652 0.3451 REMARK 3 9 2.6688 - 2.5660 1.00 4221 120 0.2830 0.3671 REMARK 3 10 2.5660 - 2.4775 1.00 4175 124 0.2939 0.3502 REMARK 3 11 2.4775 - 2.4000 0.99 4173 137 0.2930 0.3313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4713 REMARK 3 ANGLE : 1.367 6440 REMARK 3 CHIRALITY : 0.058 713 REMARK 3 PLANARITY : 0.008 831 REMARK 3 DIHEDRAL : 14.334 1645 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.0040 -20.2259 -17.7834 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.1502 REMARK 3 T33: 0.3429 T12: 0.0382 REMARK 3 T13: 0.0186 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.0944 L22: 0.0318 REMARK 3 L33: 0.0706 L12: -0.0772 REMARK 3 L13: 0.0763 L23: -0.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0649 S13: 0.1131 REMARK 3 S21: -0.0825 S22: 0.1931 S23: 0.2141 REMARK 3 S31: -0.0932 S32: 0.0919 S33: 0.0019 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.7580 -18.1603 -34.0622 REMARK 3 T TENSOR REMARK 3 T11: 0.4417 T22: 0.1721 REMARK 3 T33: 0.2489 T12: 0.0092 REMARK 3 T13: -0.0137 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4201 L22: 0.4226 REMARK 3 L33: 0.5846 L12: -0.0883 REMARK 3 L13: -0.0816 L23: -0.2391 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0526 S13: 0.0548 REMARK 3 S21: -0.0932 S22: -0.0004 S23: 0.0293 REMARK 3 S31: -0.1069 S32: -0.0056 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 566 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.3282 -17.2865 -17.7333 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.1211 REMARK 3 T33: 0.2319 T12: -0.0015 REMARK 3 T13: 0.0025 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: -0.0174 L22: 0.6965 REMARK 3 L33: 0.8249 L12: 0.2122 REMARK 3 L13: -0.0991 L23: -0.1979 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0515 S13: 0.1069 REMARK 3 S21: 0.0919 S22: -0.0342 S23: 0.0902 REMARK 3 S31: -0.2729 S32: 0.0503 S33: -0.0028 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 567 THROUGH 648 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.4784 -20.4548 -28.2468 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.2369 REMARK 3 T33: 0.3125 T12: -0.0208 REMARK 3 T13: -0.0316 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.4373 L22: 0.3132 REMARK 3 L33: 0.2347 L12: 0.3192 REMARK 3 L13: -0.2022 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.0715 S13: 0.0862 REMARK 3 S21: -0.0224 S22: -0.0454 S23: -0.2146 REMARK 3 S31: -0.1973 S32: 0.1755 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 649 THROUGH 749 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.2211 -26.4560 -24.6139 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.1887 REMARK 3 T33: 0.2839 T12: -0.0217 REMARK 3 T13: 0.0012 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.0879 L22: 0.2186 REMARK 3 L33: 0.3942 L12: -0.1580 REMARK 3 L13: 0.1040 L23: -0.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: 0.0112 S13: -0.0682 REMARK 3 S21: 0.0951 S22: -0.1370 S23: -0.0940 REMARK 3 S31: -0.1275 S32: 0.1118 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 750 THROUGH 807 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.8490 -38.9270 -6.9147 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.2484 REMARK 3 T33: 0.2536 T12: -0.0114 REMARK 3 T13: 0.0285 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.1471 L22: 0.3243 REMARK 3 L33: 0.1572 L12: 0.2070 REMARK 3 L13: 0.1532 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.1250 S13: 0.0655 REMARK 3 S21: 0.0757 S22: -0.0292 S23: 0.0625 REMARK 3 S31: -0.1119 S32: -0.0659 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: DEHYDROGENASE DOMAIN WITHOUT LIGAND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAAC PH 4.6, 0.1 M CDCL2, 18% REMARK 280 (W/V) PEG MONOMETHYLETHER 550, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.50200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.50200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.50200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 225 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 LEU A 354 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 225 150.88 -48.71 REMARK 500 THR A 226 -71.23 -47.75 REMARK 500 SER A 264 -74.34 -121.58 REMARK 500 ASN A 416 -114.92 58.00 REMARK 500 THR A 421 -78.41 -126.14 REMARK 500 VAL A 472 -53.52 70.91 REMARK 500 ASP A 553 -60.26 -91.15 REMARK 500 ASP A 554 73.08 -115.68 REMARK 500 PRO A 576 -166.82 -73.86 REMARK 500 GLU A 603 155.08 178.57 REMARK 500 SER A 605 -56.90 -129.50 REMARK 500 ASN A 671 -0.93 67.94 REMARK 500 ASP A 737 -171.31 -176.01 REMARK 500 TYR A 776 -11.22 77.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 359 THR A 360 147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QI3 RELATED DB: PDB REMARK 900 RELATED ID: 4QI4 RELATED DB: PDB REMARK 900 RELATED ID: 4QI6 RELATED DB: PDB REMARK 900 RELATED ID: 4QI7 RELATED DB: PDB REMARK 900 RELATED ID: 4QI8 RELATED DB: PDB DBREF 4QI5 A 223 807 UNP A9XK88 A9XK88_9BASI 244 828 SEQRES 1 A 585 PRO VAL PRO THR GLY VAL SER PHE ASP TYR ILE VAL VAL SEQRES 2 A 585 GLY GLY GLY ALA GLY GLY ILE PRO ALA ALA ASP LYS LEU SEQRES 3 A 585 SER GLU ALA GLY LYS SER VAL LEU LEU ILE GLU LYS GLY SEQRES 4 A 585 PHE ALA SER THR ALA ASN THR GLY GLY THR LEU GLY PRO SEQRES 5 A 585 GLU TRP LEU GLU GLY HIS ASP LEU THR ARG PHE ASP VAL SEQRES 6 A 585 PRO GLY LEU CYS ASN GLN ILE TRP VAL ASP SER LYS GLY SEQRES 7 A 585 ILE ALA CYS GLU ASP THR ASP GLN MET ALA GLY CYS VAL SEQRES 8 A 585 LEU GLY GLY GLY THR ALA VAL ASN ALA GLY LEU TRP PHE SEQRES 9 A 585 LYS PRO TYR SER LEU ASP TRP ASP TYR LEU PHE PRO ASP SEQRES 10 A 585 GLY TRP LYS TYR ASN ASP VAL GLN PRO ALA ILE ASN ARG SEQRES 11 A 585 ALA LEU SER ARG ILE PRO GLY THR ASP ALA PRO SER THR SEQRES 12 A 585 ASP GLY LYS ARG TYR TYR GLN GLU GLY PHE GLU VAL LEU SEQRES 13 A 585 SER LYS GLY LEU ALA ALA GLY GLY TRP THR SER VAL THR SEQRES 14 A 585 ALA ASN ASN ALA PRO ASP LYS LYS ASN ARG THR PHE ALA SEQRES 15 A 585 HIS ALA PRO PHE MET PHE ALA GLY GLY GLU ARG ASN GLY SEQRES 16 A 585 PRO LEU GLY THR TYR PHE GLN THR ALA LYS LYS ARG ASN SEQRES 17 A 585 ASN PHE ASP VAL TRP LEU ASN THR SER VAL LYS ARG VAL SEQRES 18 A 585 ILE ARG GLU GLY GLY HIS ILE THR GLY VAL GLU VAL GLU SEQRES 19 A 585 PRO PHE ARG ASP GLY GLY TYR GLU GLY ILE VAL PRO VAL SEQRES 20 A 585 THR LYS VAL THR GLY ARG VAL ILE LEU SER ALA GLY THR SEQRES 21 A 585 PHE GLY SER ALA LYS ILE LEU LEU ARG SER GLY ILE GLY SEQRES 22 A 585 PRO GLU ASP GLN LEU GLU VAL VAL ALA ALA SER GLU LYS SEQRES 23 A 585 ASP GLY PRO THR MET ILE GLY ASN SER SER TRP ILE ASN SEQRES 24 A 585 LEU PRO VAL GLY TYR ASN LEU ASP ASP HIS LEU ASN THR SEQRES 25 A 585 ASP THR VAL ILE SER HIS PRO ASP VAL VAL PHE TYR ASP SEQRES 26 A 585 PHE TYR GLU ALA TRP ASP ASP PRO ILE GLU SER ASP LYS SEQRES 27 A 585 ASN SER TYR LEU GLU SER ARG THR GLY ILE LEU ALA GLN SEQRES 28 A 585 ALA ALA PRO ASN ILE GLY PRO MET PHE TRP GLU GLU ILE SEQRES 29 A 585 VAL GLY ALA ASP GLY ILE VAL ARG GLN LEU GLN TRP THR SEQRES 30 A 585 ALA ARG VAL GLU GLY SER LEU GLY ALA PRO ASN GLY HIS SEQRES 31 A 585 THR MET THR MET SER GLN TYR LEU GLY ARG GLY ALA THR SEQRES 32 A 585 SER ARG GLY ARG MET THR ILE THR PRO SER LEU THR THR SEQRES 33 A 585 ILE VAL SER ASP VAL PRO TYR LEU LYS ASP PRO ASN ASP SEQRES 34 A 585 LYS GLU ALA VAL ILE GLN GLY ILE ILE ASN LEU GLN ASN SEQRES 35 A 585 ALA LEU GLN ASN VAL ALA ASN LEU THR TRP LEU PHE PRO SEQRES 36 A 585 ASN SER THR ILE THR PRO ARG GLU TYR VAL GLU SER MET SEQRES 37 A 585 VAL VAL SER PRO SER ASN ARG ARG SER ASN HIS TRP MET SEQRES 38 A 585 GLY THR ASN LYS LEU GLY THR ASP ASP GLY ARG LYS GLY SEQRES 39 A 585 GLY SER ALA VAL VAL ASP LEU ASP THR ARG VAL TYR GLY SEQRES 40 A 585 THR ASP ASN LEU PHE VAL ILE ASP ALA SER ILE PHE PRO SEQRES 41 A 585 GLY VAL PRO THR THR ASN PRO THR SER TYR ILE VAL VAL SEQRES 42 A 585 ALA ALA GLU HIS ALA SER SER ARG ILE LEU ALA LEU PRO SEQRES 43 A 585 ASP LEU GLU PRO VAL PRO LYS TYR GLY GLN CYS GLY GLY SEQRES 44 A 585 ARG GLU TRP THR GLY SER PHE VAL CYS ALA ASP GLY SER SEQRES 45 A 585 THR CYS GLU TYR GLN ASN GLU TRP TYR SER GLN CYS LEU MODRES 4QI5 ASN A 437 ASN GLYCOSYLATION SITE MODRES 4QI5 ASN A 400 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET FAD A 901 53 HET ABL A 902 23 HET CD A 907 1 HET CD A 908 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ABL (2R,3R,4R,5R)-4,5-DIHYDROXY-2-(HYDROXYMETHYL)-6- HETNAM 2 ABL OXOPIPERIDIN-3-YL BETA-D-GLUCOPYRANOSIDE HETNAM CD CADMIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN ABL 5-AMINO-5-DEOXY-CELLOBIONO-1,5-LACTAM; (2R,3R,4R,5R)-4, HETSYN 2 ABL 5-DIHYDROXY-2-(HYDROXYMETHYL)-6-OXOPIPERIDIN-3-YL HETSYN 3 ABL BETA-D-GLUCOSIDE; (2R,3R,4R,5R)-4,5-DIHYDROXY-2- HETSYN 4 ABL (HYDROXYMETHYL)-6-OXOPIPERIDIN-3-YL D-GLUCOSIDE; (2R, HETSYN 5 ABL 3R,4R,5R)-4,5-DIHYDROXY-2-(HYDROXYMETHYL)-6- HETSYN 6 ABL OXOPIPERIDIN-3-YL GLUCOSIDE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 ABL C12 H21 N O10 FORMUL 6 CD 2(CD 2+) FORMUL 8 HOH *182(H2 O) HELIX 1 1 GLY A 240 ALA A 251 1 12 HELIX 2 2 THR A 265 GLY A 269 5 5 HELIX 3 3 PRO A 274 GLU A 278 5 5 HELIX 4 4 VAL A 287 CYS A 291 5 5 HELIX 5 5 ASN A 292 ASP A 297 1 6 HELIX 6 6 GLY A 316 ASN A 321 1 6 HELIX 7 7 TYR A 329 PHE A 337 1 9 HELIX 8 8 LYS A 342 ILE A 357 1 16 HELIX 9 9 GLN A 372 GLY A 385 1 14 HELIX 10 10 ASN A 416 THR A 421 1 6 HELIX 11 11 THR A 421 LYS A 428 1 8 HELIX 12 12 ALA A 480 SER A 492 1 13 HELIX 13 13 PRO A 496 SER A 506 1 11 HELIX 14 14 TYR A 549 ASP A 554 1 6 HELIX 15 15 ILE A 556 ARG A 567 1 12 HELIX 16 16 GLY A 569 GLN A 573 5 5 HELIX 17 17 ASP A 648 LEU A 666 1 19 HELIX 18 18 THR A 682 MET A 690 1 9 HELIX 19 19 SER A 693 ARG A 698 1 6 HELIX 20 20 ASP A 712 GLY A 716 5 5 HELIX 21 21 ASP A 737 PHE A 741 5 5 HELIX 22 22 PRO A 749 ALA A 766 1 18 SHEET 1 A 5 PHE A 432 TRP A 435 0 SHEET 2 A 5 VAL A 255 ILE A 258 1 N LEU A 257 O ASP A 433 SHEET 3 A 5 TYR A 232 VAL A 235 1 N VAL A 234 O LEU A 256 SHEET 4 A 5 ARG A 475 LEU A 478 1 O ILE A 477 N VAL A 235 SHEET 5 A 5 LEU A 733 VAL A 735 1 O PHE A 734 N LEU A 478 SHEET 1 B 7 THR A 388 SER A 389 0 SHEET 2 B 7 THR A 402 HIS A 405 1 O PHE A 403 N THR A 388 SHEET 3 B 7 ASN A 577 VAL A 587 -1 O MET A 581 N ALA A 404 SHEET 4 B 7 VAL A 593 VAL A 602 -1 O TRP A 598 N PHE A 582 SHEET 5 B 7 THR A 613 LEU A 620 -1 O TYR A 619 N GLN A 597 SHEET 6 B 7 LEU A 532 SER A 539 -1 N THR A 536 O MET A 616 SHEET 7 B 7 THR A 673 PHE A 676 -1 O THR A 673 N SER A 539 SHEET 1 C 3 THR A 438 GLU A 446 0 SHEET 2 C 3 HIS A 449 PRO A 457 -1 O GLU A 454 N ARG A 442 SHEET 3 C 3 GLY A 465 PRO A 468 -1 O GLY A 465 N VAL A 455 SHEET 1 D 2 ARG A 629 ILE A 632 0 SHEET 2 D 2 THR A 638 ASP A 642 -1 O ILE A 639 N THR A 631 SHEET 1 E 3 GLN A 778 GLY A 780 0 SHEET 2 E 3 SER A 804 LEU A 807 -1 O SER A 804 N CYS A 779 SHEET 3 E 3 THR A 795 TYR A 798 -1 N THR A 795 O LEU A 807 SSBOND 1 CYS A 303 CYS A 312 1555 1555 2.04 SSBOND 2 CYS A 779 CYS A 796 1555 1555 2.06 SSBOND 3 CYS A 790 CYS A 806 1555 1555 2.04 LINK ND2 ASN A 400 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 437 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK OD2 ASP A 339 CD CD A 907 1555 1555 2.06 LINK OE2 GLU A 456 CD CD A 908 1555 1555 2.07 CISPEP 1 ALA A 575 PRO A 576 0 -19.88 CISPEP 2 PHE A 676 PRO A 677 0 5.82 CRYST1 171.324 171.324 73.004 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005837 0.003370 0.000000 0.00000 SCALE2 0.000000 0.006740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013698 0.00000