HEADER RNA BINDING PROTEIN/RNA 31-MAY-14 4QIK TITLE CRYSTAL STRUCTURE OF THE ROQ DOMAIN OF HUMAN ROQUIN IN COMPLEX WITH TITLE 2 THE TNF23 RNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ROQ DOMAIN (UNP RESIDUES 88-407); COMPND 5 SYNONYM: ROQUIN, RING FINGER AND C3H ZINC FINGER PROTEIN 1, RING COMPND 6 FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1, RING COMPND 7 FINGER PROTEIN 198; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-R(*AP*C*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP* COMPND 11 CP*GP*GP*AP*G)-3'; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: TNF23 DOUBLE-STRANDED RNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RC3H1, KIAA2025, RNF198; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS RNA DUPLEX, WINGED-HELIX MOTIF, MRNA SECONDARY STRUCTURE, MRNA DECAY, KEYWDS 2 IMMUNE RESPONSES, AUTOIMMUNITY, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.TAN,L.TONG REVDAT 3 20-AUG-14 4QIK 1 JRNL REVDAT 2 30-JUL-14 4QIK 1 JRNL REVDAT 1 16-JUL-14 4QIK 0 JRNL AUTH D.TAN,M.ZHOU,M.KILEDJIAN,L.TONG JRNL TITL THE ROQ DOMAIN OF ROQUIN RECOGNIZES MRNA CONSTITUTIVE-DECAY JRNL TITL 2 ELEMENT AND DOUBLE-STRANDED RNA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 679 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 25026078 JRNL DOI 10.1038/NSMB.2857 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 128927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 6371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6903 - 4.0921 0.97 11951 644 0.1715 0.1916 REMARK 3 2 4.0921 - 3.2485 1.00 12265 606 0.1599 0.1906 REMARK 3 3 3.2485 - 2.8380 1.00 12275 662 0.1863 0.2362 REMARK 3 4 2.8380 - 2.5786 1.00 12218 692 0.1878 0.2104 REMARK 3 5 2.5786 - 2.3938 1.00 12358 604 0.1740 0.2128 REMARK 3 6 2.3938 - 2.2526 1.00 12228 664 0.1744 0.2274 REMARK 3 7 2.2526 - 2.1398 1.00 12360 616 0.1750 0.2115 REMARK 3 8 2.1398 - 2.0467 1.00 12288 617 0.1824 0.2298 REMARK 3 9 2.0467 - 1.9679 1.00 12346 616 0.1989 0.2381 REMARK 3 10 1.9679 - 1.9000 1.00 12267 650 0.2266 0.2652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5737 REMARK 3 ANGLE : 1.209 7950 REMARK 3 CHIRALITY : 0.077 941 REMARK 3 PLANARITY : 0.006 898 REMARK 3 DIHEDRAL : 13.772 2303 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-14. REMARK 100 THE RCSB ID CODE IS RCSB086099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE/CITRIC ACID REMARK 280 BUFFER, PH 5.7, 1.5 M LITHIUM CHLORIDE, 18%-21% PEG6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 86 REMARK 465 ALA A 87 REMARK 465 SER A 88 REMARK 465 VAL A 257 REMARK 465 THR A 258 REMARK 465 LYS A 259 REMARK 465 ARG A 260 REMARK 465 ASP A 261 REMARK 465 GLU A 262 REMARK 465 ASP A 263 REMARK 465 SER A 264 REMARK 465 SER A 399 REMARK 465 LYS A 400 REMARK 465 LYS A 401 REMARK 465 GLY A 402 REMARK 465 ALA A 403 REMARK 465 ASP A 404 REMARK 465 GLN A 405 REMARK 465 GLN A 406 REMARK 465 GLN A 407 REMARK 465 LEU A 408 REMARK 465 GLU A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 MSE B 86 REMARK 465 ALA B 87 REMARK 465 SER B 114 REMARK 465 SER B 115 REMARK 465 ALA B 116 REMARK 465 ARG B 117 REMARK 465 GLY B 118 REMARK 465 VAL B 119 REMARK 465 GLY B 120 REMARK 465 LEU B 121 REMARK 465 ASN B 122 REMARK 465 SER B 123 REMARK 465 THR B 124 REMARK 465 THR B 125 REMARK 465 GLN B 126 REMARK 465 SER B 127 REMARK 465 SER B 399 REMARK 465 LYS B 400 REMARK 465 LYS B 401 REMARK 465 GLY B 402 REMARK 465 ALA B 403 REMARK 465 ASP B 404 REMARK 465 GLN B 405 REMARK 465 GLN B 406 REMARK 465 GLN B 407 REMARK 465 LEU B 408 REMARK 465 GLU B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 465 A C 1 REMARK 465 C C 2 REMARK 465 U C 13 REMARK 465 A C 22 REMARK 465 G C 23 REMARK 465 A D 1 REMARK 465 C D 2 REMARK 465 A D 3 REMARK 465 U D 4 REMARK 465 G D 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A C 3 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 277 O HOH B 914 1.84 REMARK 500 O HOH B 869 O HOH B 938 1.99 REMARK 500 O HOH A 850 O HOH A 871 2.04 REMARK 500 O HOH B 927 O HOH B 992 2.07 REMARK 500 O HOH A 728 O HOH A 773 2.07 REMARK 500 N3 A C 16 O HOH C 144 2.11 REMARK 500 O ASP B 261 O HOH B 897 2.12 REMARK 500 OE1 GLU B 277 O HOH B 934 2.12 REMARK 500 O2 U D 8 O HOH D 104 2.12 REMARK 500 O HOH A 955 O HOH A 956 2.12 REMARK 500 NE2 GLN A 172 O HOH A 664 2.13 REMARK 500 O HOH A 682 O HOH A 981 2.14 REMARK 500 O HOH A 980 O HOH B 975 2.15 REMARK 500 OE1 GLN A 396 O HOH A 900 2.16 REMARK 500 O HOH C 104 O HOH C 133 2.16 REMARK 500 OE1 GLU B 282 O HOH B 838 2.16 REMARK 500 NH1 ARG A 164 O HOH A 943 2.16 REMARK 500 OP1 A C 18 O HOH C 115 2.16 REMARK 500 O HOH B 853 O HOH B 899 2.17 REMARK 500 O HOH A 845 O HOH A 879 2.18 REMARK 500 O HOH B 985 O HOH B 986 2.19 REMARK 500 O HOH B 656 O HOH B 868 2.19 REMARK 500 O LYS A 256 O HOH A 924 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 977 O HOH B 989 3444 1.94 REMARK 500 O HOH B 977 O HOH B 996 3444 1.97 REMARK 500 O HOH A 942 O HOH B 949 4555 2.15 REMARK 500 O HOH B 787 O HOH B 869 3444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 899 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B 887 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 965 DISTANCE = 5.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QIL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ROQ DOMAIN OF HUMAN ROQUIN IN REMARK 900 COMPLEX WITH THE HMG19 STEM-LOOP RNA DBREF 4QIK A 88 407 UNP Q5TC82 RC3H1_HUMAN 88 407 DBREF 4QIK B 88 407 UNP Q5TC82 RC3H1_HUMAN 88 407 DBREF 4QIK C 1 23 PDB 4QIK 4QIK 1 23 DBREF 4QIK D 1 23 PDB 4QIK 4QIK 1 23 SEQADV 4QIK MSE A 86 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK ALA A 87 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK LEU A 408 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK GLU A 409 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS A 410 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS A 411 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS A 412 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS A 413 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS A 414 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS A 415 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK MSE B 86 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK ALA B 87 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK LEU B 408 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK GLU B 409 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS B 410 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS B 411 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS B 412 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS B 413 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS B 414 UNP Q5TC82 EXPRESSION TAG SEQADV 4QIK HIS B 415 UNP Q5TC82 EXPRESSION TAG SEQRES 1 A 330 MSE ALA SER GLY VAL GLU ASP THR LYS HIS TYR GLU GLU SEQRES 2 A 330 ALA LYS LYS CYS VAL GLU GLU LEU ALA LEU TYR LEU LYS SEQRES 3 A 330 PRO LEU SER SER ALA ARG GLY VAL GLY LEU ASN SER THR SEQRES 4 A 330 THR GLN SER VAL LEU SER ARG PRO MSE GLN ARG LYS LEU SEQRES 5 A 330 VAL THR LEU VAL HIS CYS GLN LEU VAL GLU GLU GLU GLY SEQRES 6 A 330 ARG ILE ARG ALA MSE ARG ALA ALA ARG SER LEU GLY GLU SEQRES 7 A 330 ARG THR VAL THR GLU LEU ILE LEU GLN HIS GLN ASN PRO SEQRES 8 A 330 GLN GLN LEU SER SER ASN LEU TRP ALA ALA VAL ARG ALA SEQRES 9 A 330 ARG GLY CYS GLN PHE LEU GLY PRO ALA MSE GLN GLU GLU SEQRES 10 A 330 ALA LEU LYS LEU VAL LEU LEU ALA LEU GLU ASP GLY SER SEQRES 11 A 330 ALA LEU SER ARG LYS VAL LEU VAL LEU PHE VAL VAL GLN SEQRES 12 A 330 ARG LEU GLU PRO ARG PHE PRO GLN ALA SER LYS THR SER SEQRES 13 A 330 ILE GLY HIS VAL VAL GLN LEU LEU TYR ARG ALA SER CYS SEQRES 14 A 330 PHE LYS VAL THR LYS ARG ASP GLU ASP SER SER LEU MSE SEQRES 15 A 330 GLN LEU LYS GLU GLU PHE ARG THR TYR GLU ALA LEU ARG SEQRES 16 A 330 ARG GLU HIS ASP SER GLN ILE VAL GLN ILE ALA MSE GLU SEQRES 17 A 330 ALA GLY LEU ARG ILE ALA PRO ASP GLN TRP SER SER LEU SEQRES 18 A 330 LEU TYR GLY ASP GLN SER HIS LYS SER HIS MSE GLN SER SEQRES 19 A 330 ILE ILE ASP LYS LEU GLN THR PRO ALA SER PHE ALA GLN SEQRES 20 A 330 SER VAL GLN GLU LEU THR ILE ALA LEU GLN ARG THR GLY SEQRES 21 A 330 ASP PRO ALA ASN LEU ASN ARG LEU ARG PRO HIS LEU GLU SEQRES 22 A 330 LEU LEU ALA ASN ILE ASP PRO SER PRO ASP ALA PRO PRO SEQRES 23 A 330 PRO THR TRP GLU GLN LEU GLU ASN GLY LEU VAL ALA VAL SEQRES 24 A 330 ARG THR VAL VAL HIS GLY LEU VAL ASP TYR ILE GLN ASN SEQRES 25 A 330 HIS SER LYS LYS GLY ALA ASP GLN GLN GLN LEU GLU HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS SEQRES 1 B 330 MSE ALA SER GLY VAL GLU ASP THR LYS HIS TYR GLU GLU SEQRES 2 B 330 ALA LYS LYS CYS VAL GLU GLU LEU ALA LEU TYR LEU LYS SEQRES 3 B 330 PRO LEU SER SER ALA ARG GLY VAL GLY LEU ASN SER THR SEQRES 4 B 330 THR GLN SER VAL LEU SER ARG PRO MSE GLN ARG LYS LEU SEQRES 5 B 330 VAL THR LEU VAL HIS CYS GLN LEU VAL GLU GLU GLU GLY SEQRES 6 B 330 ARG ILE ARG ALA MSE ARG ALA ALA ARG SER LEU GLY GLU SEQRES 7 B 330 ARG THR VAL THR GLU LEU ILE LEU GLN HIS GLN ASN PRO SEQRES 8 B 330 GLN GLN LEU SER SER ASN LEU TRP ALA ALA VAL ARG ALA SEQRES 9 B 330 ARG GLY CYS GLN PHE LEU GLY PRO ALA MSE GLN GLU GLU SEQRES 10 B 330 ALA LEU LYS LEU VAL LEU LEU ALA LEU GLU ASP GLY SER SEQRES 11 B 330 ALA LEU SER ARG LYS VAL LEU VAL LEU PHE VAL VAL GLN SEQRES 12 B 330 ARG LEU GLU PRO ARG PHE PRO GLN ALA SER LYS THR SER SEQRES 13 B 330 ILE GLY HIS VAL VAL GLN LEU LEU TYR ARG ALA SER CYS SEQRES 14 B 330 PHE LYS VAL THR LYS ARG ASP GLU ASP SER SER LEU MSE SEQRES 15 B 330 GLN LEU LYS GLU GLU PHE ARG THR TYR GLU ALA LEU ARG SEQRES 16 B 330 ARG GLU HIS ASP SER GLN ILE VAL GLN ILE ALA MSE GLU SEQRES 17 B 330 ALA GLY LEU ARG ILE ALA PRO ASP GLN TRP SER SER LEU SEQRES 18 B 330 LEU TYR GLY ASP GLN SER HIS LYS SER HIS MSE GLN SER SEQRES 19 B 330 ILE ILE ASP LYS LEU GLN THR PRO ALA SER PHE ALA GLN SEQRES 20 B 330 SER VAL GLN GLU LEU THR ILE ALA LEU GLN ARG THR GLY SEQRES 21 B 330 ASP PRO ALA ASN LEU ASN ARG LEU ARG PRO HIS LEU GLU SEQRES 22 B 330 LEU LEU ALA ASN ILE ASP PRO SER PRO ASP ALA PRO PRO SEQRES 23 B 330 PRO THR TRP GLU GLN LEU GLU ASN GLY LEU VAL ALA VAL SEQRES 24 B 330 ARG THR VAL VAL HIS GLY LEU VAL ASP TYR ILE GLN ASN SEQRES 25 B 330 HIS SER LYS LYS GLY ALA ASP GLN GLN GLN LEU GLU HIS SEQRES 26 B 330 HIS HIS HIS HIS HIS SEQRES 1 C 23 A C A U G U U U U C U G U SEQRES 2 C 23 G A A A A C G G A G SEQRES 1 D 23 A C A U G U U U U C U G U SEQRES 2 D 23 G A A A A C G G A G MODRES 4QIK MSE A 133 MET SELENOMETHIONINE MODRES 4QIK MSE A 155 MET SELENOMETHIONINE MODRES 4QIK MSE A 199 MET SELENOMETHIONINE MODRES 4QIK MSE A 267 MET SELENOMETHIONINE MODRES 4QIK MSE A 292 MET SELENOMETHIONINE MODRES 4QIK MSE A 317 MET SELENOMETHIONINE MODRES 4QIK MSE B 133 MET SELENOMETHIONINE MODRES 4QIK MSE B 155 MET SELENOMETHIONINE MODRES 4QIK MSE B 199 MET SELENOMETHIONINE MODRES 4QIK MSE B 267 MET SELENOMETHIONINE MODRES 4QIK MSE B 292 MET SELENOMETHIONINE MODRES 4QIK MSE B 317 MET SELENOMETHIONINE HET MSE A 133 8 HET MSE A 155 8 HET MSE A 199 8 HET MSE A 267 8 HET MSE A 292 8 HET MSE A 317 8 HET MSE B 133 8 HET MSE B 155 8 HET MSE B 199 8 HET MSE B 267 8 HET MSE B 292 8 HET MSE B 317 8 HET CL A 501 1 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HET CL A 508 1 HET CL B 501 1 HET CL B 502 1 HET CL B 503 1 HET CL B 504 1 HET CL B 505 1 HET CL B 506 1 HET GOL B 507 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 CL 14(CL 1-) FORMUL 19 GOL C3 H8 O3 FORMUL 20 HOH *885(H2 O) HELIX 1 1 GLU A 91 TYR A 109 1 19 HELIX 2 2 LEU A 121 THR A 125 5 5 HELIX 3 3 SER A 130 CYS A 143 1 14 HELIX 4 4 GLU A 147 GLN A 174 1 28 HELIX 5 5 GLN A 178 ARG A 190 1 13 HELIX 6 6 GLY A 196 GLU A 212 1 17 HELIX 7 7 ARG A 219 GLU A 231 1 13 HELIX 8 8 SER A 238 ALA A 252 1 15 HELIX 9 9 LYS A 270 ARG A 274 5 5 HELIX 10 10 THR A 275 ALA A 294 1 20 HELIX 11 11 ALA A 299 GLY A 309 1 11 HELIX 12 12 HIS A 313 GLN A 325 1 13 HELIX 13 13 ALA A 328 ARG A 343 1 16 HELIX 14 14 ASN A 349 ARG A 352 5 4 HELIX 15 15 LEU A 353 ASN A 362 1 10 HELIX 16 16 THR A 373 HIS A 398 1 26 HELIX 17 17 GLY B 89 LEU B 108 1 20 HELIX 18 18 TYR B 109 LYS B 111 5 3 HELIX 19 19 SER B 130 HIS B 142 1 13 HELIX 20 20 GLU B 147 GLN B 174 1 28 HELIX 21 21 GLN B 178 ARG B 190 1 13 HELIX 22 22 GLY B 196 GLU B 212 1 17 HELIX 23 23 ARG B 219 GLU B 231 1 13 HELIX 24 24 SER B 238 ALA B 252 1 15 HELIX 25 25 GLU B 271 ARG B 274 5 4 HELIX 26 26 THR B 275 ALA B 294 1 20 HELIX 27 27 ALA B 299 GLY B 309 1 11 HELIX 28 28 HIS B 313 GLN B 325 1 13 HELIX 29 29 ALA B 328 ARG B 343 1 16 HELIX 30 30 ASN B 349 ARG B 352 5 4 HELIX 31 31 LEU B 353 ASN B 362 1 10 HELIX 32 32 THR B 373 HIS B 398 1 26 SHEET 1 A 2 LEU A 217 SER A 218 0 SHEET 2 A 2 LEU A 266 MSE A 267 -1 O MSE A 267 N LEU A 217 SHEET 1 B 3 LEU B 217 SER B 218 0 SHEET 2 B 3 LEU B 266 LEU B 269 -1 O MSE B 267 N LEU B 217 SHEET 3 B 3 PHE B 255 THR B 258 -1 N LYS B 256 O GLN B 268 LINK C PRO A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N GLN A 134 1555 1555 1.33 LINK C ALA A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N ARG A 156 1555 1555 1.33 LINK C ALA A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N GLN A 200 1555 1555 1.33 LINK C LEU A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N GLN A 268 1555 1555 1.32 LINK C ALA A 291 N MSE A 292 1555 1555 1.32 LINK C MSE A 292 N GLU A 293 1555 1555 1.33 LINK C HIS A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N GLN A 318 1555 1555 1.33 LINK C PRO B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N GLN B 134 1555 1555 1.33 LINK C ALA B 154 N MSE B 155 1555 1555 1.33 LINK C MSE B 155 N ARG B 156 1555 1555 1.33 LINK C ALA B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N GLN B 200 1555 1555 1.33 LINK C LEU B 266 N MSE B 267 1555 1555 1.33 LINK C MSE B 267 N GLN B 268 1555 1555 1.34 LINK C ALA B 291 N MSE B 292 1555 1555 1.33 LINK C MSE B 292 N GLU B 293 1555 1555 1.33 LINK C HIS B 316 N MSE B 317 1555 1555 1.33 LINK C MSE B 317 N GLN B 318 1555 1555 1.34 SITE 1 AC1 4 TRP A 184 ARG A 188 PHE A 194 HOH A 773 SITE 1 AC2 5 GLY A 196 PRO A 197 ALA A 198 MSE A 199 SITE 2 AC2 5 HOH A 742 SITE 1 AC3 4 GLN A 144 GLY A 150 ARG A 153 HOH A 911 SITE 1 AC4 4 TYR A 96 LYS A 100 LEU A 145 THR B 93 SITE 1 AC5 3 SER A 305 ASP A 310 GLN A 311 SITE 1 AC6 3 ASN A 175 HOH A 659 HOH A 918 SITE 1 AC7 3 SER A 312 LYS A 314 SER A 315 SITE 1 AC8 5 ALA A 186 ARG A 190 HOH A 676 HOH A 770 SITE 2 AC8 5 HOH B 681 SITE 1 AC9 2 ARG B 188 PHE B 194 SITE 1 BC1 6 GLU A 148 ARG A 151 HOH A 855 GLU B 147 SITE 2 BC1 6 GLU B 148 ARG B 151 SITE 1 BC2 4 GLN B 144 GLY B 150 ARG B 153 HOH B 911 SITE 1 BC3 3 LYS B 256 LYS B 270 GLU B 271 SITE 1 BC4 4 HOH A 697 ALA B 186 ARG B 190 HOH B 682 SITE 1 BC5 3 ARG B 233 PHE B 234 HOH B 963 SITE 1 BC6 7 MSE B 155 ARG B 156 ILE B 363 ASP B 364 SITE 2 BC6 7 GLN B 376 HOH B 725 HOH B 881 CRYST1 90.800 93.100 100.200 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009980 0.00000