data_4QIO
# 
_entry.id   4QIO 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4QIO         pdb_00004qio 10.2210/pdb4qio/pdb 
NDB   NA3040       ?            ?                   
RCSB  RCSB086103   ?            ?                   
WWPDB D_1000086103 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2015-06-03 
2 'Structure model' 1 1 2017-07-19 
3 'Structure model' 1 2 2022-08-24 
4 'Structure model' 1 3 2024-02-28 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' Advisory               
2 2 'Structure model' 'Database references'  
3 3 'Structure model' Advisory               
4 3 'Structure model' 'Database references'  
5 3 'Structure model' 'Derived calculations' 
6 4 'Structure model' 'Data collection'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  2 'Structure model' citation                     
2  2 'Structure model' citation_author              
3  2 'Structure model' pdbx_unobs_or_zero_occ_atoms 
4  3 'Structure model' citation                     
5  3 'Structure model' citation_author              
6  3 'Structure model' database_2                   
7  3 'Structure model' pdbx_struct_conn_angle       
8  3 'Structure model' pdbx_unobs_or_zero_occ_atoms 
9  3 'Structure model' struct_conn                  
10 3 'Structure model' struct_site                  
11 4 'Structure model' chem_comp_atom               
12 4 'Structure model' chem_comp_bond               
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_citation.country'                           
2  2 'Structure model' '_citation.journal_abbrev'                    
3  2 'Structure model' '_citation.journal_id_CSD'                    
4  2 'Structure model' '_citation.journal_id_ISSN'                   
5  2 'Structure model' '_citation.pdbx_database_id_DOI'              
6  2 'Structure model' '_citation.pdbx_database_id_PubMed'           
7  2 'Structure model' '_citation.title'                             
8  2 'Structure model' '_citation.year'                              
9  2 'Structure model' '_citation_author.name'                       
10 3 'Structure model' '_citation.journal_id_ISSN'                   
11 3 'Structure model' '_citation.journal_volume'                    
12 3 'Structure model' '_citation.page_first'                        
13 3 'Structure model' '_citation.page_last'                         
14 3 'Structure model' '_citation.title'                             
15 3 'Structure model' '_citation_author.identifier_ORCID'           
16 3 'Structure model' '_database_2.pdbx_DOI'                        
17 3 'Structure model' '_database_2.pdbx_database_accession'         
18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
30 3 'Structure model' '_pdbx_struct_conn_angle.value'               
31 3 'Structure model' '_struct_conn.pdbx_dist_value'                
32 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
33 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
34 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
35 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
36 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
37 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
38 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
39 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
40 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
41 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
42 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
43 3 'Structure model' '_struct_site.pdbx_auth_asym_id'              
44 3 'Structure model' '_struct_site.pdbx_auth_comp_id'              
45 3 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4QIO 
_pdbx_database_status.recvd_initial_deposition_date   2014-06-01 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          3QRN 
_pdbx_database_related.details        'Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCGCCGA) at high resolution' 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Gurung, S.P.' 1 
'Hall, J.P.'   2 
'Cardin, C.J.' 3 
# 
_citation.id                        primary 
_citation.title                     
;Inosine Can Increase DNA's Susceptibility to Photo-oxidation by a Ru II Complex due to Structural Change in the Minor Groove.
;
_citation.journal_abbrev            Chemistry 
_citation.journal_volume            23 
_citation.page_first                10344 
_citation.page_last                 10351 
_citation.year                      2017 
_citation.journal_id_ASTM           ? 
_citation.country                   GE 
_citation.journal_id_ISSN           0947-6539 
_citation.journal_id_CSD            ? 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   28543779 
_citation.pdbx_database_id_DOI      10.1002/chem.201701447 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Keane, P.M.'      1  0000-0003-2828-8512 
primary 'Hall, J.P.'       2  ?                   
primary 'Poynton, F.E.'    3  ?                   
primary 'Poulsen, B.C.'    4  ?                   
primary 'Gurung, S.P.'     5  ?                   
primary 'Clark, I.P.'      6  ?                   
primary 'Sazanovich, I.V.' 7  ?                   
primary 'Towrie, M.'       8  ?                   
primary 'Gunnlaugsson, T.' 9  0000-0003-4814-6853 
primary 'Quinn, S.J.'      10 0000-0002-7773-8842 
primary 'Cardin, C.J.'     11 0000-0002-2556-9995 
primary 'Kelly, J.M.'      12 0000-0002-3706-1777 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*IP*A)-3'" 3030.979 1  ? ? ? ? 
2 non-polymer syn 'BARIUM ION'                             137.327  1  ? ? ? ? 
3 non-polymer syn 'Ru(tap)2(dppz) complex'                 747.732  1  ? ? ? ? 
4 non-polymer syn 'CHLORIDE ION'                           35.453   1  ? ? ? ? 
5 water       nat water                                    18.015   80 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DI)(DA)' 
_entity_poly.pdbx_seq_one_letter_code_can   TCGGCGCCIA 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'BARIUM ION'             BA  
3 'Ru(tap)2(dppz) complex' RKL 
4 'CHLORIDE ION'           CL  
5 water                    HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DT n 
1 2  DC n 
1 3  DG n 
1 4  DG n 
1 5  DC n 
1 6  DG n 
1 7  DC n 
1 8  DC n 
1 9  DI n 
1 10 DA n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BA  non-polymer   . 'BARIUM ION'                         ? 'Ba 2'             137.327 
CL  non-polymer   . 'CHLORIDE ION'                       ? 'Cl -1'            35.453  
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'  331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'   307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'  347.221 
DI  'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE"   ? 'C10 H13 N4 O7 P'  332.207 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P'  322.208 
HOH non-polymer   . WATER                                ? 'H2 O'             18.015  
RKL non-polymer   . 'Ru(tap)2(dppz) complex'             ? 'C38 H22 N12 Ru 2' 747.732 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DT 1  1  1  DT DT A . n 
A 1 2  DC 2  2  2  DC DC A . n 
A 1 3  DG 3  3  3  DG DG A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DC 5  5  5  DC DC A . n 
A 1 6  DG 6  6  6  DG DG A . n 
A 1 7  DC 7  7  7  DC DC A . n 
A 1 8  DC 8  8  8  DC DC A . n 
A 1 9  DI 9  9  9  DI DI A . n 
A 1 10 DA 10 10 10 DA DA A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 BA  1  101 12 BA  BA  A . 
C 3 RKL 1  102 2  RKL RKL A . 
D 4 CL  1  103 1  CL  CL  A . 
E 5 HOH 1  201 3  HOH HOH A . 
E 5 HOH 2  202 4  HOH HOH A . 
E 5 HOH 3  203 5  HOH HOH A . 
E 5 HOH 4  204 6  HOH HOH A . 
E 5 HOH 5  205 7  HOH HOH A . 
E 5 HOH 6  206 8  HOH HOH A . 
E 5 HOH 7  207 9  HOH HOH A . 
E 5 HOH 8  208 10 HOH HOH A . 
E 5 HOH 9  209 11 HOH HOH A . 
E 5 HOH 10 210 12 HOH HOH A . 
E 5 HOH 11 211 13 HOH HOH A . 
E 5 HOH 12 212 14 HOH HOH A . 
E 5 HOH 13 213 15 HOH HOH A . 
E 5 HOH 14 214 16 HOH HOH A . 
E 5 HOH 15 215 17 HOH HOH A . 
E 5 HOH 16 216 18 HOH HOH A . 
E 5 HOH 17 217 19 HOH HOH A . 
E 5 HOH 18 218 20 HOH HOH A . 
E 5 HOH 19 219 21 HOH HOH A . 
E 5 HOH 20 220 22 HOH HOH A . 
E 5 HOH 21 221 23 HOH HOH A . 
E 5 HOH 22 222 25 HOH HOH A . 
E 5 HOH 23 223 26 HOH HOH A . 
E 5 HOH 24 224 27 HOH HOH A . 
E 5 HOH 25 225 28 HOH HOH A . 
E 5 HOH 26 226 29 HOH HOH A . 
E 5 HOH 27 227 30 HOH HOH A . 
E 5 HOH 28 228 31 HOH HOH A . 
E 5 HOH 29 229 32 HOH HOH A . 
E 5 HOH 30 230 33 HOH HOH A . 
E 5 HOH 31 231 34 HOH HOH A . 
E 5 HOH 32 232 35 HOH HOH A . 
E 5 HOH 33 233 36 HOH HOH A . 
E 5 HOH 34 234 37 HOH HOH A . 
E 5 HOH 35 235 38 HOH HOH A . 
E 5 HOH 36 236 39 HOH HOH A . 
E 5 HOH 37 237 40 HOH HOH A . 
E 5 HOH 38 238 41 HOH HOH A . 
E 5 HOH 39 239 42 HOH HOH A . 
E 5 HOH 40 240 43 HOH HOH A . 
E 5 HOH 41 241 45 HOH HOH A . 
E 5 HOH 42 242 46 HOH HOH A . 
E 5 HOH 43 243 47 HOH HOH A . 
E 5 HOH 44 244 48 HOH HOH A . 
E 5 HOH 45 245 49 HOH HOH A . 
E 5 HOH 46 246 50 HOH HOH A . 
E 5 HOH 47 247 51 HOH HOH A . 
E 5 HOH 48 248 52 HOH HOH A . 
E 5 HOH 49 249 53 HOH HOH A . 
E 5 HOH 50 250 54 HOH HOH A . 
E 5 HOH 51 251 55 HOH HOH A . 
E 5 HOH 52 252 56 HOH HOH A . 
E 5 HOH 53 253 57 HOH HOH A . 
E 5 HOH 54 254 59 HOH HOH A . 
E 5 HOH 55 255 60 HOH HOH A . 
E 5 HOH 56 256 61 HOH HOH A . 
E 5 HOH 57 257 62 HOH HOH A . 
E 5 HOH 58 258 63 HOH HOH A . 
E 5 HOH 59 259 64 HOH HOH A . 
E 5 HOH 60 260 65 HOH HOH A . 
E 5 HOH 61 261 66 HOH HOH A . 
E 5 HOH 62 262 70 HOH HOH A . 
E 5 HOH 63 263 71 HOH HOH A . 
E 5 HOH 64 264 72 HOH HOH A . 
E 5 HOH 65 265 73 HOH HOH A . 
E 5 HOH 66 266 75 HOH HOH A . 
E 5 HOH 67 267 76 HOH HOH A . 
E 5 HOH 68 268 77 HOH HOH A . 
E 5 HOH 69 269 78 HOH HOH A . 
E 5 HOH 70 270 79 HOH HOH A . 
E 5 HOH 71 271 80 HOH HOH A . 
E 5 HOH 72 272 81 HOH HOH A . 
E 5 HOH 73 273 82 HOH HOH A . 
E 5 HOH 74 274 84 HOH HOH A . 
E 5 HOH 75 275 85 HOH HOH A . 
E 5 HOH 76 276 87 HOH HOH A . 
E 5 HOH 77 277 89 HOH HOH A . 
E 5 HOH 78 278 91 HOH HOH A . 
E 5 HOH 79 279 92 HOH HOH A . 
E 5 HOH 80 280 93 HOH HOH A . 
# 
_pdbx_unobs_or_zero_occ_atoms.id               1 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num    1 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag     N 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag   0 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id     A 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id     HOH 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id      255 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code     ? 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id     O 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id     A 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id    E 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id    HOH 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id     ? 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id    O 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
GDA    'data collection' .        ? 1 
PHASER phasing           .        ? 2 
REFMAC refinement        5.8.0071 ? 3 
XDS    'data reduction'  .        ? 4 
SCALA  'data scaling'    .        ? 5 
# 
_cell.entry_id           4QIO 
_cell.length_a           42.160 
_cell.length_b           42.160 
_cell.length_c           39.650 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4QIO 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          4QIO 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.91 
_exptl_crystal.density_percent_sol   57.68 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            291 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.0 
_exptl_crystal_grow.pdbx_details    
;1 uL 1 mM d(TCGGCGCCIA)2 + 1 uL 4 mM rac-Ru(TAP)2(dppz).2Cl + 6uL 40 mM sodium cacodylate, 12 mM spermine, 10% MPD, 20 mM barium chloride, 80 mM potassium chloride equilibrated against 1 mL 35% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               PIXEL 
_diffrn_detector.type                   'DECTRIS PILATUS 6M' 
_diffrn_detector.pdbx_collection_date   2014-02-17 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'double crystal Si(111)' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.82565 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'DIAMOND BEAMLINE I02' 
_diffrn_source.pdbx_synchrotron_site       Diamond 
_diffrn_source.pdbx_synchrotron_beamline   I02 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        0.82565 
# 
_reflns.entry_id                     4QIO 
_reflns.observed_criterion_sigma_I   -3 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             23.828 
_reflns.d_resolution_high            0.95 
_reflns.number_obs                   22994 
_reflns.number_all                   22994 
_reflns.percent_possible_obs         99.5 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high             0.95 
_reflns_shell.d_res_low              0.97 
_reflns_shell.percent_possible_all   98.9 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
# 
_refine.entry_id                                 4QIO 
_refine.ls_number_reflns_obs                     21791 
_refine.ls_number_reflns_all                     21791 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             23.828 
_refine.ls_d_res_high                            0.95 
_refine.ls_percent_reflns_obs                    99.29 
_refine.ls_R_factor_obs                          0.09655 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.09538 
_refine.ls_R_factor_R_free                       0.11928 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5.1 
_refine.ls_number_reflns_R_free                  1179 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.988 
_refine.correlation_coeff_Fo_to_Fc_free          0.982 
_refine.B_iso_mean                               15.591 
_refine.aniso_B[1][1]                            -0.26 
_refine.aniso_B[2][2]                            -0.26 
_refine.aniso_B[3][3]                            0.52 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            -0.00 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'PDB ENTRY 3QRN' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.013 
_refine.pdbx_overall_ESU_R_Free                  0.015 
_refine.overall_SU_ML                            0.009 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             0.385 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   201 
_refine_hist.pdbx_number_atoms_ligand         53 
_refine_hist.number_atoms_solvent             80 
_refine_hist.number_atoms_total               334 
_refine_hist.d_res_high                       0.95 
_refine_hist.d_res_low                        23.828 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_restraint_function 
_refine_ls_restr.pdbx_refine_id 
r_bond_refined_d             0.021  0.014  ? 337 ? 'X-RAY DIFFRACTION' 
r_bond_other_d               0.002  0.020  ? 156 ? 'X-RAY DIFFRACTION' 
r_angle_refined_deg          3.084  1.773  ? 528 ? 'X-RAY DIFFRACTION' 
r_angle_other_deg            1.570  3.000  ? 360 ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_1_deg       ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_2_deg       ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_3_deg       ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_dihedral_angle_4_deg       ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_chiral_restr               0.096  0.200  ? 36  ? 'X-RAY DIFFRACTION' 
r_gen_planes_refined         0.039  0.020  ? 197 ? 'X-RAY DIFFRACTION' 
r_gen_planes_other           0.008  0.020  ? 84  ? 'X-RAY DIFFRACTION' 
r_nbd_refined                ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_nbd_other                  ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_nbtor_refined              ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_nbtor_other                ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_xyhbond_nbd_refined        ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_xyhbond_nbd_other          ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_metal_ion_refined          ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_metal_ion_other            ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_vdw_refined       ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_vdw_other         ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_hbond_refined     ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_hbond_other       ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_metal_ion_refined ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_symmetry_metal_ion_other   ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcbond_it                  ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcbond_other               ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcangle_it                 ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_mcangle_other              ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_scbond_it                  2.583  1.355  ? 337 ? 'X-RAY DIFFRACTION' 
r_scbond_other               2.579  1.355  ? 338 ? 'X-RAY DIFFRACTION' 
r_scangle_it                 ?      ?      ? ?   ? 'X-RAY DIFFRACTION' 
r_scangle_other              3.555  2.011  ? 529 ? 'X-RAY DIFFRACTION' 
r_long_range_B_refined       4.599  14.783 ? 750 ? 'X-RAY DIFFRACTION' 
r_long_range_B_other         3.833  14.136 ? 705 ? 'X-RAY DIFFRACTION' 
r_rigid_bond_restr           9.069  3.000  ? 492 ? 'X-RAY DIFFRACTION' 
r_sphericity_free            20.959 5.000  ? 9   ? 'X-RAY DIFFRACTION' 
r_sphericity_bonded          15.046 5.000  ? 525 ? 'X-RAY DIFFRACTION' 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       0.950 
_refine_ls_shell.d_res_low                        0.975 
_refine_ls_shell.number_reflns_R_work             1578 
_refine_ls_shell.R_factor_R_work                  0.175 
_refine_ls_shell.percent_reflns_obs               98.58 
_refine_ls_shell.R_factor_R_free                  0.182 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             84 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_database_PDB_matrix.entry_id          4QIO 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  4QIO 
_struct.title                     'Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCGCCIA) at high resolution' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4QIO 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'intercalation, ruthenium complex, inosine, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
E N N 5 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4QIO 
_struct_ref.pdbx_db_accession          4QIO 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           1 
_struct_ref.pdbx_seq_one_letter_code   TCGGCGCCIA 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              4QIO 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 10 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             4QIO 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  10 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       10 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 2130 ? 
1 MORE         -38  ? 
1 'SSA (A^2)'  4570 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z  1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000 
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 4 O6 ? ? ? 1_555 B BA  . BA ? ? A DG 4   A BA  101 1_555 ? ? ? ? ? ? ?            2.851 ? ? 
metalc2  metalc ? ? B BA . BA ? ? ? 1_555 E HOH . O  ? ? A BA 101 A HOH 201 1_555 ? ? ? ? ? ? ?            2.794 ? ? 
metalc3  metalc ? ? B BA . BA ? ? ? 1_555 E HOH . O  ? ? A BA 101 A HOH 202 1_555 ? ? ? ? ? ? ?            2.782 ? ? 
metalc4  metalc ? ? B BA . BA ? ? ? 1_555 E HOH . O  ? ? A BA 101 A HOH 203 1_555 ? ? ? ? ? ? ?            2.776 ? ? 
metalc5  metalc ? ? B BA . BA ? ? ? 1_555 E HOH . O  ? ? A BA 101 A HOH 204 1_555 ? ? ? ? ? ? ?            2.829 ? ? 
metalc6  metalc ? ? B BA . BA ? ? ? 1_555 E HOH . O  ? ? A BA 101 A HOH 211 1_555 ? ? ? ? ? ? ?            2.851 ? ? 
metalc7  metalc ? ? B BA . BA ? ? ? 1_555 E HOH . O  ? ? A BA 101 A HOH 279 1_555 ? ? ? ? ? ? ?            2.786 ? ? 
hydrog1  hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DI  9 O6 A ? A DC 2   A DI  9   7_555 ? ? ? ? ? ? 'DC-DI PAIR' ?     ? ? 
hydrog2  hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC  8 N3 ? ? A DG 3   A DC  8   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC  8 O2 ? ? A DG 3   A DC  8   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC  8 N4 ? ? A DG 3   A DC  8   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC  7 N3 ? ? A DG 4   A DC  7   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC  7 O2 ? ? A DG 4   A DC  7   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC  7 N4 ? ? A DG 4   A DC  7   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG  6 N1 ? ? A DC 5   A DG  6   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG  6 O6 ? ? A DC 5   A DG  6   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG  6 N2 ? ? A DC 5   A DG  6   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC  5 N3 ? ? A DG 6   A DC  5   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC  5 O2 ? ? A DG 6   A DC  5   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC  5 N4 ? ? A DG 6   A DC  5   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG  4 N1 ? ? A DC 7   A DG  4   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG  4 O6 ? ? A DC 7   A DG  4   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG  4 N2 ? ? A DC 7   A DG  4   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG  3 N1 ? ? A DC 8   A DG  3   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG  3 O6 ? ? A DC 8   A DG  3   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG  3 N2 ? ? A DC 8   A DG  3   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DI 9 N1 A ? ? 1_555 A DC  2 O2 ? ? A DI 9   A DC  2   7_555 ? ? ? ? ? ? 'DI-DC PAIR' ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 201 ? 1_555 138.9 ? 
2  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 202 ? 1_555 126.7 ? 
3  O  ? E HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 202 ? 1_555 67.0  ? 
4  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 203 ? 1_555 70.5  ? 
5  O  ? E HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 203 ? 1_555 78.3  ? 
6  O  ? E HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 203 ? 1_555 140.6 ? 
7  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 64.0  ? 
8  O  ? E HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 137.6 ? 
9  O  ? E HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 136.2 ? 
10 O  ? E HOH . ? A HOH 203 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 82.5  ? 
11 O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 123.5 ? 
12 O  ? E HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 70.7  ? 
13 O  ? E HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 108.3 ? 
14 O  ? E HOH . ? A HOH 203 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 75.4  ? 
15 O  ? E HOH . ? A HOH 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 211 ? 1_555 68.1  ? 
16 O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 279 ? 1_555 109.5 ? 
17 O  ? E HOH . ? A HOH 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 279 ? 1_555 111.1 ? 
18 O  ? E HOH . ? A HOH 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 279 ? 1_555 65.8  ? 
19 O  ? E HOH . ? A HOH 203 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 279 ? 1_555 148.9 ? 
20 O  ? E HOH . ? A HOH 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 279 ? 1_555 70.8  ? 
21 O  ? E HOH . ? A HOH 211 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E HOH . ? A HOH 279 ? 1_555 79.9  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A BA  101 ? 8  'BINDING SITE FOR RESIDUE BA A 101'  
AC2 Software A RKL 102 ? 15 'BINDING SITE FOR RESIDUE RKL A 102' 
AC3 Software A CL  103 ? 4  'BINDING SITE FOR RESIDUE CL A 103'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 8  DG  A 3  ? DG  A 3   . ? 1_555 ? 
2  AC1 8  DG  A 4  ? DG  A 4   . ? 1_555 ? 
3  AC1 8  HOH E .  ? HOH A 201 . ? 1_555 ? 
4  AC1 8  HOH E .  ? HOH A 202 . ? 1_555 ? 
5  AC1 8  HOH E .  ? HOH A 203 . ? 1_555 ? 
6  AC1 8  HOH E .  ? HOH A 204 . ? 1_555 ? 
7  AC1 8  HOH E .  ? HOH A 211 . ? 1_555 ? 
8  AC1 8  HOH E .  ? HOH A 279 . ? 1_555 ? 
9  AC2 15 DT  A 1  ? DT  A 1   . ? 7_555 ? 
10 AC2 15 DC  A 2  ? DC  A 2   . ? 7_555 ? 
11 AC2 15 DG  A 3  ? DG  A 3   . ? 7_555 ? 
12 AC2 15 DG  A 3  ? DG  A 3   . ? 5_444 ? 
13 AC2 15 DG  A 4  ? DG  A 4   . ? 5_444 ? 
14 AC2 15 DC  A 5  ? DC  A 5   . ? 5_444 ? 
15 AC2 15 DC  A 7  ? DC  A 7   . ? 3_444 ? 
16 AC2 15 DC  A 8  ? DC  A 8   . ? 3_444 ? 
17 AC2 15 DI  A 9  ? DI  A 9   . ? 1_555 ? 
18 AC2 15 DA  A 10 ? DA  A 10  . ? 3_444 ? 
19 AC2 15 DA  A 10 ? DA  A 10  . ? 1_555 ? 
20 AC2 15 CL  D .  ? CL  A 103 . ? 5_444 ? 
21 AC2 15 HOH E .  ? HOH A 223 . ? 1_555 ? 
22 AC2 15 HOH E .  ? HOH A 262 . ? 7_555 ? 
23 AC2 15 HOH E .  ? HOH A 262 . ? 5_444 ? 
24 AC3 4  DG  A 4  ? DG  A 4   . ? 1_555 ? 
25 AC3 4  DC  A 5  ? DC  A 5   . ? 1_555 ? 
26 AC3 4  RKL C .  ? RKL A 102 . ? 5_454 ? 
27 AC3 4  HOH E .  ? HOH A 206 . ? 5_454 ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "C3'" A DC 8  ? ? "O3'" A DC 8  ? ? P   A DI 9  ? A 127.87 119.70 8.17  1.20 Y 
2 1 "O5'" A DA 10 ? A P     A DA 10 ? A OP1 A DA 10 ? A 95.88  105.70 -9.82 0.90 N 
3 1 "O5'" A DA 10 ? B P     A DA 10 ? B OP1 A DA 10 ? B 99.14  105.70 -6.56 0.90 N 
# 
_pdbx_validate_planes.id              1 
_pdbx_validate_planes.PDB_model_num   1 
_pdbx_validate_planes.auth_comp_id    DC 
_pdbx_validate_planes.auth_asym_id    A 
_pdbx_validate_planes.auth_seq_id     5 
_pdbx_validate_planes.PDB_ins_code    ? 
_pdbx_validate_planes.label_alt_id    ? 
_pdbx_validate_planes.rmsd            0.117 
_pdbx_validate_planes.type            'SIDE CHAIN' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BA  BA     BA N N 1   
CL  CL     CL N N 2   
DA  OP3    O  N N 3   
DA  P      P  N N 4   
DA  OP1    O  N N 5   
DA  OP2    O  N N 6   
DA  "O5'"  O  N N 7   
DA  "C5'"  C  N N 8   
DA  "C4'"  C  N R 9   
DA  "O4'"  O  N N 10  
DA  "C3'"  C  N S 11  
DA  "O3'"  O  N N 12  
DA  "C2'"  C  N N 13  
DA  "C1'"  C  N R 14  
DA  N9     N  Y N 15  
DA  C8     C  Y N 16  
DA  N7     N  Y N 17  
DA  C5     C  Y N 18  
DA  C6     C  Y N 19  
DA  N6     N  N N 20  
DA  N1     N  Y N 21  
DA  C2     C  Y N 22  
DA  N3     N  Y N 23  
DA  C4     C  Y N 24  
DA  HOP3   H  N N 25  
DA  HOP2   H  N N 26  
DA  "H5'"  H  N N 27  
DA  "H5''" H  N N 28  
DA  "H4'"  H  N N 29  
DA  "H3'"  H  N N 30  
DA  "HO3'" H  N N 31  
DA  "H2'"  H  N N 32  
DA  "H2''" H  N N 33  
DA  "H1'"  H  N N 34  
DA  H8     H  N N 35  
DA  H61    H  N N 36  
DA  H62    H  N N 37  
DA  H2     H  N N 38  
DC  OP3    O  N N 39  
DC  P      P  N N 40  
DC  OP1    O  N N 41  
DC  OP2    O  N N 42  
DC  "O5'"  O  N N 43  
DC  "C5'"  C  N N 44  
DC  "C4'"  C  N R 45  
DC  "O4'"  O  N N 46  
DC  "C3'"  C  N S 47  
DC  "O3'"  O  N N 48  
DC  "C2'"  C  N N 49  
DC  "C1'"  C  N R 50  
DC  N1     N  N N 51  
DC  C2     C  N N 52  
DC  O2     O  N N 53  
DC  N3     N  N N 54  
DC  C4     C  N N 55  
DC  N4     N  N N 56  
DC  C5     C  N N 57  
DC  C6     C  N N 58  
DC  HOP3   H  N N 59  
DC  HOP2   H  N N 60  
DC  "H5'"  H  N N 61  
DC  "H5''" H  N N 62  
DC  "H4'"  H  N N 63  
DC  "H3'"  H  N N 64  
DC  "HO3'" H  N N 65  
DC  "H2'"  H  N N 66  
DC  "H2''" H  N N 67  
DC  "H1'"  H  N N 68  
DC  H41    H  N N 69  
DC  H42    H  N N 70  
DC  H5     H  N N 71  
DC  H6     H  N N 72  
DG  OP3    O  N N 73  
DG  P      P  N N 74  
DG  OP1    O  N N 75  
DG  OP2    O  N N 76  
DG  "O5'"  O  N N 77  
DG  "C5'"  C  N N 78  
DG  "C4'"  C  N R 79  
DG  "O4'"  O  N N 80  
DG  "C3'"  C  N S 81  
DG  "O3'"  O  N N 82  
DG  "C2'"  C  N N 83  
DG  "C1'"  C  N R 84  
DG  N9     N  Y N 85  
DG  C8     C  Y N 86  
DG  N7     N  Y N 87  
DG  C5     C  Y N 88  
DG  C6     C  N N 89  
DG  O6     O  N N 90  
DG  N1     N  N N 91  
DG  C2     C  N N 92  
DG  N2     N  N N 93  
DG  N3     N  N N 94  
DG  C4     C  Y N 95  
DG  HOP3   H  N N 96  
DG  HOP2   H  N N 97  
DG  "H5'"  H  N N 98  
DG  "H5''" H  N N 99  
DG  "H4'"  H  N N 100 
DG  "H3'"  H  N N 101 
DG  "HO3'" H  N N 102 
DG  "H2'"  H  N N 103 
DG  "H2''" H  N N 104 
DG  "H1'"  H  N N 105 
DG  H8     H  N N 106 
DG  H1     H  N N 107 
DG  H21    H  N N 108 
DG  H22    H  N N 109 
DI  OP3    O  N N 110 
DI  P      P  N N 111 
DI  OP1    O  N N 112 
DI  OP2    O  N N 113 
DI  "O5'"  O  N N 114 
DI  "C5'"  C  N N 115 
DI  "C4'"  C  N R 116 
DI  "O4'"  O  N N 117 
DI  "C3'"  C  N S 118 
DI  "O3'"  O  N N 119 
DI  "C2'"  C  N N 120 
DI  "C1'"  C  N R 121 
DI  N9     N  Y N 122 
DI  C8     C  Y N 123 
DI  N7     N  Y N 124 
DI  C5     C  Y N 125 
DI  C6     C  N N 126 
DI  O6     O  N N 127 
DI  N1     N  N N 128 
DI  C2     C  N N 129 
DI  N3     N  N N 130 
DI  C4     C  Y N 131 
DI  HOP3   H  N N 132 
DI  HOP2   H  N N 133 
DI  "H5'"  H  N N 134 
DI  "H5''" H  N N 135 
DI  "H4'"  H  N N 136 
DI  "H3'"  H  N N 137 
DI  "HO3'" H  N N 138 
DI  "H2'"  H  N N 139 
DI  "H2''" H  N N 140 
DI  "H1'"  H  N N 141 
DI  H8     H  N N 142 
DI  H1     H  N N 143 
DI  H2     H  N N 144 
DT  OP3    O  N N 145 
DT  P      P  N N 146 
DT  OP1    O  N N 147 
DT  OP2    O  N N 148 
DT  "O5'"  O  N N 149 
DT  "C5'"  C  N N 150 
DT  "C4'"  C  N R 151 
DT  "O4'"  O  N N 152 
DT  "C3'"  C  N S 153 
DT  "O3'"  O  N N 154 
DT  "C2'"  C  N N 155 
DT  "C1'"  C  N R 156 
DT  N1     N  N N 157 
DT  C2     C  N N 158 
DT  O2     O  N N 159 
DT  N3     N  N N 160 
DT  C4     C  N N 161 
DT  O4     O  N N 162 
DT  C5     C  N N 163 
DT  C7     C  N N 164 
DT  C6     C  N N 165 
DT  HOP3   H  N N 166 
DT  HOP2   H  N N 167 
DT  "H5'"  H  N N 168 
DT  "H5''" H  N N 169 
DT  "H4'"  H  N N 170 
DT  "H3'"  H  N N 171 
DT  "HO3'" H  N N 172 
DT  "H2'"  H  N N 173 
DT  "H2''" H  N N 174 
DT  "H1'"  H  N N 175 
DT  H3     H  N N 176 
DT  H71    H  N N 177 
DT  H72    H  N N 178 
DT  H73    H  N N 179 
DT  H6     H  N N 180 
HOH O      O  N N 181 
HOH H1     H  N N 182 
HOH H2     H  N N 183 
RKL RU     RU N N 184 
RKL C1     C  Y N 185 
RKL N1     N  Y N 186 
RKL C2     C  Y N 187 
RKL N2     N  Y N 188 
RKL C3     C  Y N 189 
RKL N3     N  Y N 190 
RKL C4     C  Y N 191 
RKL N4     N  Y N 192 
RKL C5     C  Y N 193 
RKL N5     N  Y N 194 
RKL C6     C  Y N 195 
RKL N6     N  Y N 196 
RKL C7     C  Y N 197 
RKL N7     N  Y N 198 
RKL C8     C  Y N 199 
RKL N8     N  Y N 200 
RKL C9     C  Y N 201 
RKL N9     N  Y N 202 
RKL C10    C  Y N 203 
RKL N10    N  Y N 204 
RKL C11    C  Y N 205 
RKL N11    N  Y N 206 
RKL C12    C  Y N 207 
RKL N12    N  Y N 208 
RKL C13    C  Y N 209 
RKL C14    C  Y N 210 
RKL C15    C  Y N 211 
RKL C16    C  Y N 212 
RKL C17    C  Y N 213 
RKL C18    C  Y N 214 
RKL C19    C  Y N 215 
RKL C20    C  Y N 216 
RKL C21    C  Y N 217 
RKL C22    C  Y N 218 
RKL C23    C  Y N 219 
RKL C24    C  Y N 220 
RKL C25    C  Y N 221 
RKL C26    C  Y N 222 
RKL C27    C  Y N 223 
RKL C28    C  Y N 224 
RKL C29    C  Y N 225 
RKL C30    C  Y N 226 
RKL C31    C  Y N 227 
RKL C32    C  Y N 228 
RKL C33    C  Y N 229 
RKL C34    C  Y N 230 
RKL C35    C  Y N 231 
RKL C36    C  Y N 232 
RKL C37    C  Y N 233 
RKL C38    C  Y N 234 
RKL H2     H  N N 235 
RKL H3     H  N N 236 
RKL H4     H  N N 237 
RKL H9     H  N N 238 
RKL H11    H  N N 239 
RKL H12    H  N N 240 
RKL H14    H  N N 241 
RKL H16    H  N N 242 
RKL H17    H  N N 243 
RKL H18    H  N N 244 
RKL H20    H  N N 245 
RKL H21    H  N N 246 
RKL H23    H  N N 247 
RKL H24    H  N N 248 
RKL H27    H  N N 249 
RKL H28    H  N N 250 
RKL H30    H  N N 251 
RKL H31    H  N N 252 
RKL H33    H  N N 253 
RKL H34    H  N N 254 
RKL H37    H  N N 255 
RKL H38    H  N N 256 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DI  OP3   P      sing N N 113 
DI  OP3   HOP3   sing N N 114 
DI  P     OP1    doub N N 115 
DI  P     OP2    sing N N 116 
DI  P     "O5'"  sing N N 117 
DI  OP2   HOP2   sing N N 118 
DI  "O5'" "C5'"  sing N N 119 
DI  "C5'" "C4'"  sing N N 120 
DI  "C5'" "H5'"  sing N N 121 
DI  "C5'" "H5''" sing N N 122 
DI  "C4'" "O4'"  sing N N 123 
DI  "C4'" "C3'"  sing N N 124 
DI  "C4'" "H4'"  sing N N 125 
DI  "O4'" "C1'"  sing N N 126 
DI  "C3'" "O3'"  sing N N 127 
DI  "C3'" "C2'"  sing N N 128 
DI  "C3'" "H3'"  sing N N 129 
DI  "O3'" "HO3'" sing N N 130 
DI  "C2'" "C1'"  sing N N 131 
DI  "C2'" "H2'"  sing N N 132 
DI  "C2'" "H2''" sing N N 133 
DI  "C1'" N9     sing N N 134 
DI  "C1'" "H1'"  sing N N 135 
DI  N9    C8     sing Y N 136 
DI  N9    C4     sing Y N 137 
DI  C8    N7     doub Y N 138 
DI  C8    H8     sing N N 139 
DI  N7    C5     sing Y N 140 
DI  C5    C6     sing N N 141 
DI  C5    C4     doub Y N 142 
DI  C6    O6     doub N N 143 
DI  C6    N1     sing N N 144 
DI  N1    C2     sing N N 145 
DI  N1    H1     sing N N 146 
DI  C2    N3     doub N N 147 
DI  C2    H2     sing N N 148 
DI  N3    C4     sing N N 149 
DT  OP3   P      sing N N 150 
DT  OP3   HOP3   sing N N 151 
DT  P     OP1    doub N N 152 
DT  P     OP2    sing N N 153 
DT  P     "O5'"  sing N N 154 
DT  OP2   HOP2   sing N N 155 
DT  "O5'" "C5'"  sing N N 156 
DT  "C5'" "C4'"  sing N N 157 
DT  "C5'" "H5'"  sing N N 158 
DT  "C5'" "H5''" sing N N 159 
DT  "C4'" "O4'"  sing N N 160 
DT  "C4'" "C3'"  sing N N 161 
DT  "C4'" "H4'"  sing N N 162 
DT  "O4'" "C1'"  sing N N 163 
DT  "C3'" "O3'"  sing N N 164 
DT  "C3'" "C2'"  sing N N 165 
DT  "C3'" "H3'"  sing N N 166 
DT  "O3'" "HO3'" sing N N 167 
DT  "C2'" "C1'"  sing N N 168 
DT  "C2'" "H2'"  sing N N 169 
DT  "C2'" "H2''" sing N N 170 
DT  "C1'" N1     sing N N 171 
DT  "C1'" "H1'"  sing N N 172 
DT  N1    C2     sing N N 173 
DT  N1    C6     sing N N 174 
DT  C2    O2     doub N N 175 
DT  C2    N3     sing N N 176 
DT  N3    C4     sing N N 177 
DT  N3    H3     sing N N 178 
DT  C4    O4     doub N N 179 
DT  C4    C5     sing N N 180 
DT  C5    C7     sing N N 181 
DT  C5    C6     doub N N 182 
DT  C7    H71    sing N N 183 
DT  C7    H72    sing N N 184 
DT  C7    H73    sing N N 185 
DT  C6    H6     sing N N 186 
HOH O     H1     sing N N 187 
HOH O     H2     sing N N 188 
RKL RU    N1     sing N N 189 
RKL RU    N2     sing N N 190 
RKL RU    N5     sing N N 191 
RKL RU    N8     sing N N 192 
RKL RU    N9     sing N N 193 
RKL RU    N12    sing N N 194 
RKL C1    N2     doub Y N 195 
RKL C1    C5     sing Y N 196 
RKL C1    C10    sing Y N 197 
RKL N1    C10    doub Y N 198 
RKL N1    C12    sing Y N 199 
RKL C2    N2     sing Y N 200 
RKL C2    C3     doub Y N 201 
RKL C2    H2     sing N N 202 
RKL C3    C4     sing Y N 203 
RKL C3    H3     sing N N 204 
RKL N3    C6     doub Y N 205 
RKL N3    C15    sing Y N 206 
RKL C4    C5     doub Y N 207 
RKL C4    H4     sing N N 208 
RKL N4    C7     doub Y N 209 
RKL N4    C13    sing Y N 210 
RKL C5    C6     sing Y N 211 
RKL N5    C19    doub Y N 212 
RKL N5    C20    sing Y N 213 
RKL C6    C7     sing Y N 214 
RKL N6    C21    sing Y N 215 
RKL N6    C22    doub Y N 216 
RKL C7    C8     sing Y N 217 
RKL N7    C25    doub Y N 218 
RKL N7    C27    sing Y N 219 
RKL C8    C9     doub Y N 220 
RKL C8    C10    sing Y N 221 
RKL N8    C26    doub Y N 222 
RKL N8    C28    sing Y N 223 
RKL C9    C11    sing Y N 224 
RKL C9    H9     sing N N 225 
RKL N9    C29    doub Y N 226 
RKL N9    C30    sing Y N 227 
RKL N10   C31    sing Y N 228 
RKL N10   C32    doub Y N 229 
RKL C11   C12    doub Y N 230 
RKL C11   H11    sing N N 231 
RKL N11   C35    doub Y N 232 
RKL N11   C37    sing Y N 233 
RKL C12   H12    sing N N 234 
RKL N12   C36    doub Y N 235 
RKL N12   C38    sing Y N 236 
RKL C13   C14    sing Y N 237 
RKL C13   C15    doub Y N 238 
RKL C14   C18    doub Y N 239 
RKL C14   H14    sing N N 240 
RKL C15   C16    sing Y N 241 
RKL C16   C17    doub Y N 242 
RKL C16   H16    sing N N 243 
RKL C17   C18    sing Y N 244 
RKL C17   H17    sing N N 245 
RKL C18   H18    sing N N 246 
RKL C19   C22    sing Y N 247 
RKL C19   C26    sing Y N 248 
RKL C20   C21    doub Y N 249 
RKL C20   H20    sing N N 250 
RKL C21   H21    sing N N 251 
RKL C22   C23    sing Y N 252 
RKL C23   C24    doub Y N 253 
RKL C23   H23    sing N N 254 
RKL C24   C25    sing Y N 255 
RKL C24   H24    sing N N 256 
RKL C25   C26    sing Y N 257 
RKL C27   C28    doub Y N 258 
RKL C27   H27    sing N N 259 
RKL C28   H28    sing N N 260 
RKL C29   C32    sing Y N 261 
RKL C29   C36    sing Y N 262 
RKL C30   C31    doub Y N 263 
RKL C30   H30    sing N N 264 
RKL C31   H31    sing N N 265 
RKL C32   C33    sing Y N 266 
RKL C33   C34    doub Y N 267 
RKL C33   H33    sing N N 268 
RKL C34   C35    sing Y N 269 
RKL C34   H34    sing N N 270 
RKL C35   C36    sing Y N 271 
RKL C37   C38    doub Y N 272 
RKL C37   H37    sing N N 273 
RKL C38   H38    sing N N 274 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
4QIO 'double helix'        
4QIO 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 2 1_555 A DI 9 7_555 0.298  -0.212 0.237  -10.091 6.593  7.546  1 A_DC2:DI9_A A 2 ? A 9 ? ?  1 
1 A DG 3 1_555 A DC 8 7_555 -0.153 -0.030 0.066  23.088  -4.100 -0.009 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 
1 A DG 4 1_555 A DC 7 7_555 -0.217 -0.147 -0.017 -8.177  1.765  -1.831 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 
1 A DC 5 1_555 A DG 6 7_555 0.217  -0.092 0.257  -3.712  -4.597 -0.773 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 
1 A DG 6 1_555 A DC 5 7_555 -0.217 -0.092 0.257  3.712   -4.597 -0.773 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 
1 A DC 7 1_555 A DG 4 7_555 0.217  -0.147 -0.017 8.177   1.765  -1.831 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 
1 A DC 8 1_555 A DG 3 7_555 0.153  -0.030 0.066  -23.088 -4.100 -0.009 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 
1 A DI 9 1_555 A DC 2 7_555 -0.298 -0.212 0.237  10.091  6.593  7.546  8 A_DI9:DC2_A A 9 ? A 2 ? ?  1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 2 1_555 A DI 9 7_555 A DG 3 1_555 A DC 8 7_555 -0.484 1.398 2.617 4.560  4.204  20.904 2.333  2.758  2.678 11.270 -12.226 
21.795 1 AA_DC2DG3:DC8DI9_AA A 2 ? A 9 ? A 3 ? A 8 ? 
1 A DG 3 1_555 A DC 8 7_555 A DG 4 1_555 A DC 7 7_555 0.071  0.786 5.119 -2.695 50.959 16.446 -5.106 -0.396 2.368 73.216 3.872   
53.445 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 
1 A DG 4 1_555 A DC 7 7_555 A DC 5 1_555 A DG 6 7_555 -0.755 0.085 3.254 -2.321 -3.738 38.910 0.575  0.848  3.270 -5.589 3.471   
39.149 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 
1 A DC 5 1_555 A DG 6 7_555 A DG 6 1_555 A DC 5 7_555 0.000  0.771 3.397 0.000  26.046 27.663 -2.661 0.000  3.026 44.053 0.000   
37.821 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 
1 A DG 6 1_555 A DC 5 7_555 A DC 7 1_555 A DG 4 7_555 0.755  0.085 3.254 2.321  -3.738 38.910 0.575  -0.848 3.270 -5.589 -3.471  
39.149 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 
1 A DC 7 1_555 A DG 4 7_555 A DC 8 1_555 A DG 3 7_555 -0.071 0.786 5.119 2.695  50.958 16.446 -5.106 0.396  2.368 73.216 -3.872  
53.445 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 
1 A DC 8 1_555 A DG 3 7_555 A DI 9 1_555 A DC 2 7_555 0.484  1.398 2.617 -4.560 4.204  20.904 2.333  -2.758 2.678 11.270 12.226  
21.795 7 AA_DC8DI9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? 
# 
_atom_sites.entry_id                    4QIO 
_atom_sites.fract_transf_matrix[1][1]   0.023719 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   -0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023719 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   -0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.025221 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BA 
C  
CL 
H  
N  
O  
P  
RU 
# 
loop_