HEADER TRANSLATION 10-JUN-14 4QL5 TITLE CRYSTAL STRUCTURE OF TRANSLATION INITIATION FACTOR IF-1 FROM TITLE 2 STREPTOCOCCUS PNEUMONIAE TIGR4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: INFA, S1_IF1, SP_0232; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS TRANSLATION INITIATION FACTOR, PROTEIN BIOSYNTHESIS, NIAID, NATIONAL KEYWDS 2 INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, CSGID, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, STRUCTURAL GENOMICS, KEYWDS 4 BETA BARREL, OB FOLD, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,O.ONOPRIYENKO,A.SAVCHENKO,W.F.ANDERSON,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 28-FEB-24 4QL5 1 REMARK SEQADV LINK REVDAT 1 02-JUL-14 4QL5 0 JRNL AUTH P.J.STOGIOS,Z.WAWRZAK,O.ONOPRIYENKO,A.SAVCHENKO, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF TRANSLATION INITIATION FACTOR IF-1 FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE TIGR4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.3236 - 4.0386 1.00 2652 139 0.1411 0.1578 REMARK 3 2 4.0386 - 3.2103 1.00 2656 121 0.1764 0.2157 REMARK 3 3 3.2103 - 2.8059 1.00 2649 143 0.2044 0.1962 REMARK 3 4 2.8059 - 2.5500 1.00 2666 127 0.2427 0.2774 REMARK 3 5 2.5500 - 2.3676 1.00 2656 129 0.2450 0.2836 REMARK 3 6 2.3676 - 2.2282 1.00 2643 139 0.2346 0.2842 REMARK 3 7 2.2282 - 2.1167 1.00 2665 124 0.2574 0.2558 REMARK 3 8 2.1167 - 2.0247 0.99 2609 149 0.2840 0.2956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1120 REMARK 3 ANGLE : 1.110 1508 REMARK 3 CHIRALITY : 0.032 174 REMARK 3 PLANARITY : 0.005 192 REMARK 3 DIHEDRAL : 14.128 440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:10) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5328 37.2833 32.5459 REMARK 3 T TENSOR REMARK 3 T11: 0.7221 T22: 0.4408 REMARK 3 T33: 0.5385 T12: 0.0336 REMARK 3 T13: -0.0063 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 6.8632 L22: 5.4503 REMARK 3 L33: 2.6391 L12: -5.8577 REMARK 3 L13: -0.5067 L23: -0.6484 REMARK 3 S TENSOR REMARK 3 S11: -0.2640 S12: 0.3912 S13: 1.8898 REMARK 3 S21: 1.7758 S22: 0.0677 S23: -1.2845 REMARK 3 S31: -1.2437 S32: -0.7733 S33: 0.1320 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 11:59) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7592 26.7815 27.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.5556 T22: 0.4980 REMARK 3 T33: 0.3958 T12: -0.1381 REMARK 3 T13: -0.0476 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 0.5063 L22: 1.4310 REMARK 3 L33: 5.5056 L12: -0.7752 REMARK 3 L13: 0.8693 L23: -0.3107 REMARK 3 S TENSOR REMARK 3 S11: 0.2809 S12: -0.0449 S13: -0.1144 REMARK 3 S21: -0.4357 S22: 0.3199 S23: 0.3983 REMARK 3 S31: 0.4900 S32: -0.8653 S33: -0.6236 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 60:72) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7020 31.9941 28.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.4606 T22: 0.6150 REMARK 3 T33: 0.3669 T12: 0.0251 REMARK 3 T13: -0.0924 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 4.0550 L22: 8.8664 REMARK 3 L33: 5.9936 L12: -0.5816 REMARK 3 L13: -0.4735 L23: 1.5393 REMARK 3 S TENSOR REMARK 3 S11: -0.3959 S12: -0.7181 S13: 0.5739 REMARK 3 S21: -0.2093 S22: 0.6461 S23: 0.5188 REMARK 3 S31: -0.0107 S32: -0.5574 S33: -0.2161 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 8:17) REMARK 3 ORIGIN FOR THE GROUP (A): 61.3376 42.4841 22.5075 REMARK 3 T TENSOR REMARK 3 T11: 0.3804 T22: 0.2811 REMARK 3 T33: 0.3716 T12: 0.0127 REMARK 3 T13: 0.0556 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.0509 L22: 2.8808 REMARK 3 L33: 8.1775 L12: 1.4262 REMARK 3 L13: 3.1908 L23: -0.6586 REMARK 3 S TENSOR REMARK 3 S11: 0.5134 S12: 0.0301 S13: 0.5207 REMARK 3 S21: -0.0999 S22: -0.6268 S23: 0.2746 REMARK 3 S31: -0.1888 S32: -0.1168 S33: 0.0769 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 18:55) REMARK 3 ORIGIN FOR THE GROUP (A): 66.1738 43.7227 21.0946 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.2366 REMARK 3 T33: 0.2879 T12: -0.0199 REMARK 3 T13: -0.0338 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 9.0086 L22: 6.9365 REMARK 3 L33: 4.9064 L12: 2.2237 REMARK 3 L13: -2.2417 L23: -1.1484 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: -0.0059 S13: 0.4885 REMARK 3 S21: -0.1593 S22: -0.1198 S23: -0.3092 REMARK 3 S31: -0.2507 S32: 0.3297 S33: -0.0925 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 56:72) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7389 37.4649 22.3665 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.4332 REMARK 3 T33: 0.3306 T12: -0.0023 REMARK 3 T13: 0.0008 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 4.2835 L22: 9.4096 REMARK 3 L33: 3.1377 L12: -2.4628 REMARK 3 L13: -0.4246 L23: -0.9765 REMARK 3 S TENSOR REMARK 3 S11: -0.3402 S12: -0.1404 S13: 0.1001 REMARK 3 S21: 0.2767 S22: -0.0834 S23: -0.3652 REMARK 3 S31: -0.0789 S32: 0.8449 S33: 0.4790 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12720 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 19.323 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL (PEG) 3350 REMARK 280 (W/V), 0.05 M ZINC ACETATE DIHYDRATE, CRYOPROTECTANT PARATONE REMARK 280 OIL, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.28750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.81800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.81800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.64375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.81800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.81800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.93125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.81800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.81800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 12.64375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.81800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.81800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.93125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 25.28750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 83.63600 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 83.63600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.86250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 228 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 5 REMARK 465 VAL B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 CA - C - O ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 17 -163.31 -116.03 REMARK 500 PRO A 18 -102.81 -58.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 GLU B 25 OE2 114.3 REMARK 620 3 GLY B 29 O 104.5 96.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 OE2 REMARK 620 2 GLU A 10 OE1 56.4 REMARK 620 3 HOH A 220 O 109.8 87.6 REMARK 620 4 HIS B 30 NE2 102.3 158.6 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06286 RELATED DB: TARGETTRACK DBREF 4QL5 A 1 72 UNP P65121 IF1_STRPN 1 72 DBREF 4QL5 B 1 72 UNP P65121 IF1_STRPN 1 72 SEQADV 4QL5 GLY A 0 UNP P65121 EXPRESSION TAG SEQADV 4QL5 GLY B 0 UNP P65121 EXPRESSION TAG SEQRES 1 A 73 GLY MET ALA LYS ASP ASP VAL ILE GLU VAL GLU GLY LYS SEQRES 2 A 73 VAL VAL ASP THR MET PRO ASN ALA MET PHE THR VAL GLU SEQRES 3 A 73 LEU GLU ASN GLY HIS GLN ILE LEU ALA THR VAL SER GLY SEQRES 4 A 73 LYS ILE ARG LYS ASN TYR ILE ARG ILE LEU ALA GLY ASP SEQRES 5 A 73 ARG VAL THR VAL GLU MET SER PRO TYR ASP LEU THR ARG SEQRES 6 A 73 GLY ARG ILE THR TYR ARG PHE LYS SEQRES 1 B 73 GLY MET ALA LYS ASP ASP VAL ILE GLU VAL GLU GLY LYS SEQRES 2 B 73 VAL VAL ASP THR MET PRO ASN ALA MET PHE THR VAL GLU SEQRES 3 B 73 LEU GLU ASN GLY HIS GLN ILE LEU ALA THR VAL SER GLY SEQRES 4 B 73 LYS ILE ARG LYS ASN TYR ILE ARG ILE LEU ALA GLY ASP SEQRES 5 B 73 ARG VAL THR VAL GLU MET SER PRO TYR ASP LEU THR ARG SEQRES 6 B 73 GLY ARG ILE THR TYR ARG PHE LYS HET ZN A 101 1 HET ZN B 101 1 HET GOL B 102 6 HET ACT B 103 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *97(H2 O) HELIX 1 1 SER A 37 LYS A 42 1 6 HELIX 2 2 SER B 37 ASN B 43 1 7 SHEET 1 A 6 ILE A 7 THR A 16 0 SHEET 2 A 6 PHE A 22 LEU A 26 -1 O THR A 23 N VAL A 14 SHEET 3 A 6 GLN A 31 VAL A 36 -1 O ALA A 34 N PHE A 22 SHEET 4 A 6 ARG A 64 ARG A 70 1 O ILE A 67 N THR A 35 SHEET 5 A 6 ARG A 52 MET A 57 -1 N GLU A 56 O ARG A 66 SHEET 6 A 6 ILE A 7 THR A 16 -1 N VAL A 9 O VAL A 55 SHEET 1 B 6 GLU B 8 MET B 17 0 SHEET 2 B 6 MET B 21 LEU B 26 -1 O THR B 23 N VAL B 14 SHEET 3 B 6 GLN B 31 VAL B 36 -1 O ALA B 34 N PHE B 22 SHEET 4 B 6 ARG B 64 ARG B 70 1 O ILE B 67 N THR B 35 SHEET 5 B 6 ARG B 52 MET B 57 -1 N GLU B 56 O ARG B 66 SHEET 6 B 6 GLU B 8 MET B 17 -1 N GLY B 11 O VAL B 53 LINK OE1 GLU A 8 ZN ZN B 101 1555 1555 2.03 LINK OE2 GLU A 10 ZN ZN A 101 1555 1555 1.94 LINK OE1 GLU A 10 ZN ZN A 101 1555 1555 2.56 LINK ZN ZN A 101 O HOH A 220 1555 1555 2.16 LINK ZN ZN A 101 NE2 HIS B 30 1555 1555 2.02 LINK OE2 GLU B 25 ZN ZN B 101 1555 1555 2.01 LINK O GLY B 29 ZN ZN B 101 1555 1555 2.03 SITE 1 AC1 4 GLU A 10 GLU A 27 HOH A 220 HIS B 30 SITE 1 AC2 4 GLU A 8 HIS A 30 GLU B 25 GLY B 29 SITE 1 AC3 2 ASP B 15 HOH B 246 SITE 1 AC4 4 GLU A 25 ASP B 61 THR B 63 ARG B 64 CRYST1 83.636 83.636 50.575 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019773 0.00000