HEADER HYDROLASE, METAL BINDING PROTEIN 13-JUN-14 4QLZ TITLE THE STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM SCHISTOSOMA JAPONICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SJCHGC07024 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: INORGANIC PYROPHOSPHATASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6182; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYROPHOSPHATASE, HYDROLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.F.WU REVDAT 3 08-NOV-23 4QLZ 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 4QLZ 1 REMARK REVDAT 1 15-JUL-15 4QLZ 0 JRNL AUTH Q.F.WU JRNL TITL STUDY ON THE STRUCTURE AND FUNCTION OF INORGANIC JRNL TITL 2 PYROPHOSPHATASE FROM SCHISTOSOMA JAPONICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 33768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8979 - 5.3199 0.98 2680 142 0.1945 0.2325 REMARK 3 2 5.3199 - 4.2249 0.96 2563 166 0.1730 0.2332 REMARK 3 3 4.2249 - 3.6915 0.97 2644 125 0.1961 0.2748 REMARK 3 4 3.6915 - 3.3543 0.99 2712 144 0.2123 0.2724 REMARK 3 5 3.3543 - 3.1140 1.00 2720 146 0.2243 0.2830 REMARK 3 6 3.1140 - 2.9305 1.00 2700 137 0.2459 0.3244 REMARK 3 7 2.9305 - 2.7838 1.00 2747 139 0.2526 0.3201 REMARK 3 8 2.7838 - 2.6627 1.00 2718 146 0.2477 0.3357 REMARK 3 9 2.6627 - 2.5602 1.00 2729 154 0.2577 0.3301 REMARK 3 10 2.5602 - 2.4719 1.00 2679 146 0.2588 0.2978 REMARK 3 11 2.4719 - 2.3946 1.00 2692 150 0.2850 0.3515 REMARK 3 12 2.3946 - 2.3262 0.90 2472 117 0.3001 0.3722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4637 REMARK 3 ANGLE : 1.377 6292 REMARK 3 CHIRALITY : 0.059 658 REMARK 3 PLANARITY : 0.009 810 REMARK 3 DIHEDRAL : 15.068 1701 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 34.5028 87.7285 14.0133 REMARK 3 T TENSOR REMARK 3 T11: 0.4087 T22: 0.4999 REMARK 3 T33: 0.4748 T12: 0.0323 REMARK 3 T13: -0.0071 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.0964 L22: 1.6477 REMARK 3 L33: 2.0955 L12: -0.0186 REMARK 3 L13: -0.6198 L23: -0.2057 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.0865 S13: -0.0700 REMARK 3 S21: 0.1123 S22: -0.0045 S23: 0.1344 REMARK 3 S31: 0.0401 S32: -0.2350 S33: 0.0125 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 58.7142 73.7338 -14.5579 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.4790 REMARK 3 T33: 0.4867 T12: 0.0449 REMARK 3 T13: -0.0095 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.9188 L22: 2.0642 REMARK 3 L33: 1.8987 L12: -0.6782 REMARK 3 L13: -0.3146 L23: 0.5378 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.1503 S13: -0.1539 REMARK 3 S21: -0.1045 S22: 0.0000 S23: 0.0227 REMARK 3 S31: 0.1831 S32: 0.1274 S33: -0.0340 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9707 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.326 REMARK 200 RESOLUTION RANGE LOW (A) : 34.894 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1E9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.0, 24% PEG 3350, REMARK 280 0.4M MGCL2, 0.4M SODIUM MALONATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.27333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.13667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 285 REMARK 465 ASN A 286 REMARK 465 ILE A 287 REMARK 465 ASN B 284 REMARK 465 THR B 285 REMARK 465 ASN B 286 REMARK 465 ILE B 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 230 OG1 CG2 REMARK 470 ASN A 241 CG OD1 ND2 REMARK 470 MET A 250 CG SD CE REMARK 470 ASN B 241 CG OD1 ND2 REMARK 470 PHE B 256 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 274 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL A 242 CG PRO A 248 1.87 REMARK 500 O CYS B 283 O HOH B 525 1.90 REMARK 500 NE2 GLN A 275 O HOH A 530 1.97 REMARK 500 N GLY B 246 CZ TYR B 249 2.03 REMARK 500 O SER A 8 OG SER A 270 2.07 REMARK 500 OD2 ASP A 29 O VAL A 242 2.10 REMARK 500 O PRO A 116 O HOH A 515 2.12 REMARK 500 O SER B 8 OG SER B 270 2.13 REMARK 500 OH TYR B 77 O HOH B 531 2.13 REMARK 500 OD2 ASP A 115 O HOH A 543 2.14 REMARK 500 O ALA A 276 O HOH A 527 2.15 REMARK 500 O HOH A 532 O HOH A 536 2.17 REMARK 500 O CYS A 58 N GLU A 60 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 260 CB - CG - CD1 ANGL. DEV. = 11.6 DEGREES REMARK 500 PRO B 248 C - N - CD ANGL. DEV. = -22.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 72.17 -155.70 REMARK 500 ALA A 36 -152.43 35.21 REMARK 500 ASN A 39 22.49 25.61 REMARK 500 LYS A 59 -39.89 44.32 REMARK 500 MET A 63 -3.54 77.39 REMARK 500 ASP A 150 49.49 -150.79 REMARK 500 TRP A 151 137.15 -39.16 REMARK 500 MET A 176 67.97 -119.52 REMARK 500 SER A 229 69.02 -54.87 REMARK 500 THR A 230 14.33 39.85 REMARK 500 PRO A 236 -154.17 -50.30 REMARK 500 ILE A 237 -54.39 87.67 REMARK 500 VAL A 242 -55.07 -134.76 REMARK 500 THR A 243 160.23 62.34 REMARK 500 VAL A 244 -107.93 -117.39 REMARK 500 LYS A 245 51.18 -113.97 REMARK 500 SER A 247 -100.83 -99.59 REMARK 500 TYR A 249 -112.69 21.06 REMARK 500 PHE A 256 -123.73 -70.42 REMARK 500 ASP A 265 -45.73 48.84 REMARK 500 PHE A 266 138.39 66.33 REMARK 500 GLN A 275 -84.81 171.14 REMARK 500 ALA A 276 45.79 -170.86 REMARK 500 ALA B 36 -160.80 49.77 REMARK 500 THR B 37 40.13 -90.56 REMARK 500 ASN B 38 36.80 -94.69 REMARK 500 MET B 63 -0.01 73.59 REMARK 500 ASN B 72 -11.77 72.71 REMARK 500 ASN B 73 17.64 102.93 REMARK 500 ASP B 145 -114.01 -66.32 REMARK 500 ASP B 150 52.99 -140.09 REMARK 500 ALA B 214 -57.05 72.81 REMARK 500 SER B 229 -73.93 -27.32 REMARK 500 THR B 230 -66.52 -133.79 REMARK 500 LYS B 231 79.99 13.94 REMARK 500 VAL B 232 81.27 -66.25 REMARK 500 PRO B 236 114.19 -32.24 REMARK 500 ILE B 237 -25.40 89.40 REMARK 500 VAL B 244 -169.91 36.74 REMARK 500 SER B 247 57.12 149.59 REMARK 500 TYR B 249 -49.25 88.87 REMARK 500 PHE B 256 134.93 -178.07 REMARK 500 ASP B 258 -76.90 -44.32 REMARK 500 ALA B 259 -57.89 61.45 REMARK 500 LYS B 262 32.35 -70.56 REMARK 500 ASP B 265 115.43 176.62 REMARK 500 THR B 273 141.03 69.40 REMARK 500 ASP B 274 -82.34 -155.23 REMARK 500 GLN B 275 -124.29 -74.54 REMARK 500 ALA B 276 46.88 -104.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 164 LYS A 165 131.97 REMARK 500 PRO A 236 ILE A 237 -129.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 113 OD2 REMARK 620 2 ASP A 118 OD2 144.7 REMARK 620 3 ASP A 150 OD1 73.1 72.1 REMARK 620 4 PO4 A 405 O3 100.4 115.0 168.3 REMARK 620 5 PO4 A 405 O2 95.0 94.3 96.1 74.4 REMARK 620 6 HOH A 515 O 90.1 86.5 93.7 96.1 169.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD1 REMARK 620 2 PO4 A 405 O1 94.2 REMARK 620 3 PO4 A 405 O3 104.5 75.0 REMARK 620 4 HOH A 502 O 77.4 96.0 170.9 REMARK 620 5 HOH A 522 O 159.3 93.0 96.0 82.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 404 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 145 OD2 REMARK 620 2 ASP A 150 OD2 89.2 REMARK 620 3 PO4 A 405 O2 158.0 97.7 REMARK 620 4 HOH A 519 O 81.7 74.6 80.1 REMARK 620 5 HOH A 538 O 92.9 109.1 104.3 173.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 405 O4 REMARK 620 2 HOH A 539 O 88.6 REMARK 620 3 HOH A 543 O 100.9 131.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 56 OE2 REMARK 620 2 PO4 B 405 O4 74.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 113 OD2 REMARK 620 2 ASP B 118 OD2 163.1 REMARK 620 3 ASP B 150 OD1 76.1 87.2 REMARK 620 4 PO4 B 405 O3 86.5 110.2 153.6 REMARK 620 5 PO4 B 405 O2 90.9 93.6 95.7 64.3 REMARK 620 6 HOH B 523 O 85.6 94.1 98.2 100.2 164.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD1 REMARK 620 2 PO4 B 405 O1 89.9 REMARK 620 3 PO4 B 405 O3 94.9 71.9 REMARK 620 4 HOH B 514 O 75.1 104.4 169.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 404 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 145 OD2 REMARK 620 2 ASP B 150 OD2 86.8 REMARK 620 3 PO4 B 405 O2 171.7 94.0 REMARK 620 4 HOH B 521 O 96.1 91.3 75.7 REMARK 620 5 HOH B 526 O 91.5 96.2 96.7 169.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QMB RELATED DB: PDB DBREF 4QLZ A 1 287 UNP Q5DE13 Q5DE13_SCHJA 1 287 DBREF 4QLZ B 1 287 UNP Q5DE13 Q5DE13_SCHJA 1 287 SEQADV 4QLZ ALA A 214 UNP Q5DE13 VAL 214 ENGINEERED MUTATION SEQADV 4QLZ ALA B 214 UNP Q5DE13 VAL 214 ENGINEERED MUTATION SEQRES 1 A 287 MET SER VAL GLU ARG GLY THR SER ASN SER ALA SER TYR SEQRES 2 A 287 LYS MET PHE LEU THR HIS GLY GLY SER PRO ILE SER TYR SEQRES 3 A 287 PHE HIS ASP VAL PRO LEU PHE ALA ASP ALA THR ASN ASN SEQRES 4 A 287 CYS TYR ASN MET ILE VAL GLU ILE PRO ARG TRP THR ASN SEQRES 5 A 287 ALA LYS MET GLU ILE CYS LYS GLU GLU LEU MET ASN PRO SEQRES 6 A 287 ILE LYS HIS ASP VAL LYS ASN ASN LYS LEU ARG TYR ILE SEQRES 7 A 287 TYR ASN VAL PHE PRO HIS LYS GLY TYR ILE TRP ASN TYR SEQRES 8 A 287 GLY ALA LEU PRO GLN THR TRP GLU ASP PRO SER TYR VAL SEQRES 9 A 287 ASP GLU ASP THR LYS ALA LYS GLY ASP ASN ASP PRO ILE SEQRES 10 A 287 ASP VAL CYS GLU ILE GLY SER LYS ILE TRP PRO SER GLY SEQRES 11 A 287 SER VAL ILE PRO VAL LYS VAL LEU GLY ILE LEU GLY MET SEQRES 12 A 287 ILE ASP GLU GLY GLU THR ASP TRP LYS VAL ILE ALA ILE SEQRES 13 A 287 ASN VAL ALA ASP PRO MET ALA GLU LYS LEU ASN ASP ILE SEQRES 14 A 287 LEU ASP VAL ASP ALA HIS MET PRO GLY PHE LEU LYS ALA SEQRES 15 A 287 THR ARG ASP TRP PHE LYS TYR TYR LYS VAL PRO ALA GLY SEQRES 16 A 287 LYS PRO GLU ASN SER PHE ALA PHE ASN GLY GLU PHE LYS SEQRES 17 A 287 ASN LYS GLU PHE ALA ALA LYS ILE ILE SER LYS THR HIS SEQRES 18 A 287 GLU HIS TRP GLN LYS LEU ILE SER THR LYS VAL GLU ALA SEQRES 19 A 287 GLY PRO ILE ILE ARG ALA ASN VAL THR VAL LYS GLY SER SEQRES 20 A 287 PRO TYR MET VAL SER LYS GLU ASP PHE ILE ASP ALA LEU SEQRES 21 A 287 GLN LYS HIS GLU ASP PHE LYS ARG GLY SER GLU PRO THR SEQRES 22 A 287 ASP GLN ALA ILE GLU GLN TRP HIS PHE CYS ASN THR ASN SEQRES 23 A 287 ILE SEQRES 1 B 287 MET SER VAL GLU ARG GLY THR SER ASN SER ALA SER TYR SEQRES 2 B 287 LYS MET PHE LEU THR HIS GLY GLY SER PRO ILE SER TYR SEQRES 3 B 287 PHE HIS ASP VAL PRO LEU PHE ALA ASP ALA THR ASN ASN SEQRES 4 B 287 CYS TYR ASN MET ILE VAL GLU ILE PRO ARG TRP THR ASN SEQRES 5 B 287 ALA LYS MET GLU ILE CYS LYS GLU GLU LEU MET ASN PRO SEQRES 6 B 287 ILE LYS HIS ASP VAL LYS ASN ASN LYS LEU ARG TYR ILE SEQRES 7 B 287 TYR ASN VAL PHE PRO HIS LYS GLY TYR ILE TRP ASN TYR SEQRES 8 B 287 GLY ALA LEU PRO GLN THR TRP GLU ASP PRO SER TYR VAL SEQRES 9 B 287 ASP GLU ASP THR LYS ALA LYS GLY ASP ASN ASP PRO ILE SEQRES 10 B 287 ASP VAL CYS GLU ILE GLY SER LYS ILE TRP PRO SER GLY SEQRES 11 B 287 SER VAL ILE PRO VAL LYS VAL LEU GLY ILE LEU GLY MET SEQRES 12 B 287 ILE ASP GLU GLY GLU THR ASP TRP LYS VAL ILE ALA ILE SEQRES 13 B 287 ASN VAL ALA ASP PRO MET ALA GLU LYS LEU ASN ASP ILE SEQRES 14 B 287 LEU ASP VAL ASP ALA HIS MET PRO GLY PHE LEU LYS ALA SEQRES 15 B 287 THR ARG ASP TRP PHE LYS TYR TYR LYS VAL PRO ALA GLY SEQRES 16 B 287 LYS PRO GLU ASN SER PHE ALA PHE ASN GLY GLU PHE LYS SEQRES 17 B 287 ASN LYS GLU PHE ALA ALA LYS ILE ILE SER LYS THR HIS SEQRES 18 B 287 GLU HIS TRP GLN LYS LEU ILE SER THR LYS VAL GLU ALA SEQRES 19 B 287 GLY PRO ILE ILE ARG ALA ASN VAL THR VAL LYS GLY SER SEQRES 20 B 287 PRO TYR MET VAL SER LYS GLU ASP PHE ILE ASP ALA LEU SEQRES 21 B 287 GLN LYS HIS GLU ASP PHE LYS ARG GLY SER GLU PRO THR SEQRES 22 B 287 ASP GLN ALA ILE GLU GLN TRP HIS PHE CYS ASN THR ASN SEQRES 23 B 287 ILE HET CO A 401 1 HET CO A 402 1 HET CO A 403 1 HET CO A 404 1 HET PO4 A 405 5 HET CO B 401 1 HET CO B 402 1 HET CO B 403 1 HET CO B 404 1 HET PO4 B 405 5 HETNAM CO COBALT (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 3 CO 8(CO 2+) FORMUL 7 PO4 2(O4 P 3-) FORMUL 13 HOH *80(H2 O) HELIX 1 1 ASP A 168 MET A 176 1 9 HELIX 2 2 GLY A 178 TYR A 190 1 13 HELIX 3 3 LYS A 191 GLY A 195 5 5 HELIX 4 4 PHE A 203 GLY A 205 5 3 HELIX 5 5 LYS A 210 SER A 229 1 20 HELIX 6 6 ILE A 257 LYS A 262 1 6 HELIX 7 7 ASP B 160 GLU B 164 5 5 HELIX 8 8 ASP B 168 MET B 176 1 9 HELIX 9 9 GLY B 178 TYR B 190 1 13 HELIX 10 10 LYS B 191 GLY B 195 5 5 HELIX 11 11 PHE B 203 GLU B 206 5 4 HELIX 12 12 GLU B 211 THR B 230 1 20 SHEET 1 A 3 SER A 2 ARG A 5 0 SHEET 2 A 3 LYS A 14 HIS A 19 -1 O PHE A 16 N VAL A 3 SHEET 3 A 3 SER A 22 ILE A 24 -1 O SER A 22 N HIS A 19 SHEET 1 B 7 PHE A 33 ASP A 35 0 SHEET 2 B 7 CYS A 40 ILE A 47 -1 O CYS A 40 N ALA A 34 SHEET 3 B 7 ASN A 90 ALA A 93 -1 O TYR A 91 N ILE A 47 SHEET 4 B 7 ASP A 118 GLU A 121 -1 O GLU A 121 N ASN A 90 SHEET 5 B 7 LYS A 152 ASN A 157 1 O VAL A 153 N CYS A 120 SHEET 6 B 7 VAL A 132 LEU A 141 -1 N LEU A 138 O ILE A 154 SHEET 7 B 7 PHE A 207 ASN A 209 -1 O LYS A 208 N ILE A 140 SHEET 1 C 4 PHE A 33 ASP A 35 0 SHEET 2 C 4 CYS A 40 ILE A 47 -1 O CYS A 40 N ALA A 34 SHEET 3 C 4 VAL A 132 LEU A 141 -1 O ILE A 133 N MET A 43 SHEET 4 C 4 PHE A 207 ASN A 209 -1 O LYS A 208 N ILE A 140 SHEET 1 D 2 MET A 55 ILE A 57 0 SHEET 2 D 2 ILE A 66 HIS A 68 -1 O LYS A 67 N GLU A 56 SHEET 1 E 2 VAL A 70 LYS A 71 0 SHEET 2 E 2 LYS A 74 LEU A 75 -1 O LYS A 74 N LYS A 71 SHEET 1 F 2 ASN A 80 VAL A 81 0 SHEET 2 F 2 TRP A 280 HIS A 281 1 O HIS A 281 N ASN A 80 SHEET 1 G 3 GLU A 148 THR A 149 0 SHEET 2 G 3 MET A 143 ASP A 145 -1 N ASP A 145 O GLU A 148 SHEET 3 G 3 SER A 200 PHE A 201 -1 O SER A 200 N ILE A 144 SHEET 1 H 3 SER B 2 ARG B 5 0 SHEET 2 H 3 LYS B 14 HIS B 19 -1 O PHE B 16 N VAL B 3 SHEET 3 H 3 SER B 22 ILE B 24 -1 O SER B 22 N HIS B 19 SHEET 1 I 4 SER B 2 ARG B 5 0 SHEET 2 I 4 LYS B 14 HIS B 19 -1 O PHE B 16 N VAL B 3 SHEET 3 I 4 ILE B 66 HIS B 68 -1 O ILE B 66 N MET B 15 SHEET 4 I 4 MET B 55 ILE B 57 -1 N GLU B 56 O LYS B 67 SHEET 1 J 7 PHE B 33 ASP B 35 0 SHEET 2 J 7 CYS B 40 ILE B 47 -1 O CYS B 40 N ALA B 34 SHEET 3 J 7 ASN B 90 ALA B 93 -1 O TYR B 91 N ILE B 47 SHEET 4 J 7 ASP B 118 GLU B 121 -1 O GLU B 121 N ASN B 90 SHEET 5 J 7 LYS B 152 ASN B 157 1 O VAL B 153 N CYS B 120 SHEET 6 J 7 VAL B 132 LEU B 141 -1 N LEU B 138 O ILE B 154 SHEET 7 J 7 LYS B 208 ASN B 209 -1 O LYS B 208 N ILE B 140 SHEET 1 K 4 PHE B 33 ASP B 35 0 SHEET 2 K 4 CYS B 40 ILE B 47 -1 O CYS B 40 N ALA B 34 SHEET 3 K 4 VAL B 132 LEU B 141 -1 O ILE B 133 N MET B 43 SHEET 4 K 4 LYS B 208 ASN B 209 -1 O LYS B 208 N ILE B 140 SHEET 1 L 2 VAL B 70 LYS B 71 0 SHEET 2 L 2 LYS B 74 LEU B 75 -1 O LYS B 74 N LYS B 71 SHEET 1 M 2 ASN B 80 VAL B 81 0 SHEET 2 M 2 TRP B 280 HIS B 281 1 O HIS B 281 N ASN B 80 SHEET 1 N 2 MET B 143 ILE B 144 0 SHEET 2 N 2 SER B 200 PHE B 201 -1 O SER B 200 N ILE B 144 LINK OD2 ASP A 113 CO CO A 401 1555 1555 2.37 LINK OD2 ASP A 118 CO CO A 401 1555 1555 2.24 LINK OD1 ASP A 118 CO CO A 402 1555 1555 2.20 LINK OD2 ASP A 145 CO CO A 404 1555 1555 2.13 LINK OD1 ASP A 150 CO CO A 401 1555 1555 2.46 LINK OD2 ASP A 150 CO CO A 404 1555 1555 2.17 LINK CO CO A 401 O3 PO4 A 405 1555 1555 1.83 LINK CO CO A 401 O2 PO4 A 405 1555 1555 2.19 LINK CO CO A 401 O HOH A 515 1555 1555 2.55 LINK CO CO A 402 O1 PO4 A 405 1555 1555 2.03 LINK CO CO A 402 O3 PO4 A 405 1555 1555 2.06 LINK CO CO A 402 O HOH A 502 1555 1555 2.14 LINK CO CO A 402 O HOH A 522 1555 1555 2.13 LINK CO CO A 403 O4 PO4 A 405 1555 1555 1.91 LINK CO CO A 403 O HOH A 539 1555 1555 2.27 LINK CO CO A 403 O HOH A 543 1555 1555 2.54 LINK CO CO A 404 O2 PO4 A 405 1555 1555 2.04 LINK CO CO A 404 O HOH A 519 1555 1555 2.23 LINK CO CO A 404 O HOH A 538 1555 1555 2.07 LINK OE2 GLU B 56 CO CO B 403 1555 1555 2.62 LINK OD2 ASP B 113 CO CO B 401 1555 1555 2.32 LINK OD2 ASP B 118 CO CO B 401 1555 1555 1.90 LINK OD1 ASP B 118 CO CO B 402 1555 1555 2.17 LINK OD2 ASP B 145 CO CO B 404 1555 1555 2.15 LINK OD1 ASP B 150 CO CO B 401 1555 1555 2.14 LINK OD2 ASP B 150 CO CO B 404 1555 1555 2.33 LINK CO CO B 401 O3 PO4 B 405 1555 1555 2.07 LINK CO CO B 401 O2 PO4 B 405 1555 1555 2.51 LINK CO CO B 401 O HOH B 523 1555 1555 2.28 LINK CO CO B 402 O1 PO4 B 405 1555 1555 2.07 LINK CO CO B 402 O3 PO4 B 405 1555 1555 2.18 LINK CO CO B 402 O HOH B 514 1555 1555 2.29 LINK CO CO B 403 O4 PO4 B 405 1555 1555 2.11 LINK CO CO B 404 O2 PO4 B 405 1555 1555 1.91 LINK CO CO B 404 O HOH B 521 1555 1555 2.29 LINK CO CO B 404 O HOH B 526 1555 1555 2.03 CISPEP 1 PHE A 82 PRO A 83 0 8.10 CISPEP 2 THR A 243 VAL A 244 0 17.65 CISPEP 3 PHE B 82 PRO B 83 0 10.03 CISPEP 4 LYS B 245 GLY B 246 0 7.98 CISPEP 5 SER B 247 PRO B 248 0 18.85 CISPEP 6 PHE B 256 ILE B 257 0 -26.77 SITE 1 AC1 6 ASP A 113 ASP A 118 ASP A 150 CO A 402 SITE 2 AC1 6 PO4 A 405 HOH A 515 SITE 1 AC2 5 ASP A 118 CO A 401 PO4 A 405 HOH A 502 SITE 2 AC2 5 HOH A 522 SITE 1 AC3 5 GLU A 56 ASP A 115 PO4 A 405 HOH A 539 SITE 2 AC3 5 HOH A 543 SITE 1 AC4 6 ASP A 145 ASP A 150 LYS A 152 PO4 A 405 SITE 2 AC4 6 HOH A 519 HOH A 538 SITE 1 AC5 14 LYS A 54 TYR A 91 ASP A 113 ASP A 115 SITE 2 AC5 14 ASP A 118 ASP A 150 LYS A 152 CO A 401 SITE 3 AC5 14 CO A 402 CO A 403 CO A 404 HOH A 519 SITE 4 AC5 14 HOH A 522 HOH A 539 SITE 1 AC6 6 ASP B 113 ASP B 118 ASP B 150 CO B 402 SITE 2 AC6 6 PO4 B 405 HOH B 523 SITE 1 AC7 4 ASP B 118 CO B 401 PO4 B 405 HOH B 514 SITE 1 AC8 2 GLU B 56 PO4 B 405 SITE 1 AC9 6 ASP B 145 ASP B 150 LYS B 152 PO4 B 405 SITE 2 AC9 6 HOH B 521 HOH B 526 SITE 1 BC1 13 LYS B 54 GLU B 56 TYR B 91 ASP B 113 SITE 2 BC1 13 ASP B 118 ASP B 150 LYS B 152 CO B 401 SITE 3 BC1 13 CO B 402 CO B 403 CO B 404 HOH B 521 SITE 4 BC1 13 HOH B 526 CRYST1 76.080 76.080 123.410 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013144 0.007589 0.000000 0.00000 SCALE2 0.000000 0.015177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008103 0.00000