HEADER HYDROLASE 17-JUN-14 4QN0 TITLE CRYSTAL STRUCTURE OF THE CPS-6 MUTANT Q130K COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE G, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 64-302; COMPND 5 SYNONYM: ENDO G, CED-3 PROTEASE SUPPRESSOR 6; COMPND 6 EC: 3.1.30.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: ROUNDWORM; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: CPS-6, C41D11.8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BETA-ALPHA METAL MOTIF, ENDORIBONUCLEASE, MITOCHONDRIAL KEYWDS 2 MEMBRANE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.L.J.LIN,H.S.YUAN REVDAT 3 08-NOV-23 4QN0 1 REMARK SEQADV LINK REVDAT 2 27-JUL-16 4QN0 1 JRNL REVDAT 1 17-JUN-15 4QN0 0 JRNL AUTH J.L.J.LIN,A.NAKAGAWA,R.SKEEN-GAAR,W.Z.YANG,P.ZHAO,Z.ZHANG, JRNL AUTH 2 X.GE,S.MITANI,D.XUE,H.S.YUAN JRNL TITL OXIDATIVE STRESS IMPAIRS CELL DEATH BY REPRESSING THE JRNL TITL 2 NUCLEASE ACTIVITY OF MITOCHONDRIAL ENDONUCLEASE G JRNL REF CELL REP V. 16 279 2016 JRNL REFN ESSN 2211-1247 JRNL PMID 27346342 JRNL DOI 10.1016/J.CELREP.2016.05.090 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.J.LIN,A.NAKAGAWA,Y.Y.HSIAO,W.Z.YANG,Y.T.WANG, REMARK 1 AUTH 2 L.G.DOUDEVA,R.R.SKEEN-GAAR,D.XUI,H.S.YUAN REMARK 1 TITL STRUCTURAL INSIGHTS INTO APOPTOTIC DNA DEGRADATION BY CED-3 REMARK 1 TITL 2 PROTEASE SUPPRESSOR-6 (CPS-6) FROM CAENORHABDITIS ELEGANS REMARK 1 REF J.BIOL.CHEM. V. 287 7110 2012 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 22223640 REMARK 1 DOI 10.1074/JBC.M111.316075 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1059) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 29535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4867 - 6.5734 0.99 2116 153 0.1798 0.2041 REMARK 3 2 6.5734 - 5.2307 1.00 2081 150 0.1725 0.2256 REMARK 3 3 5.2307 - 4.5733 1.00 2085 151 0.1422 0.1759 REMARK 3 4 4.5733 - 4.1569 0.99 2090 141 0.1386 0.1770 REMARK 3 5 4.1569 - 3.8600 1.00 2048 155 0.1604 0.2121 REMARK 3 6 3.8600 - 3.6330 1.00 2087 159 0.1873 0.2462 REMARK 3 7 3.6330 - 3.4514 1.00 2090 138 0.1881 0.2444 REMARK 3 8 3.4514 - 3.3015 0.99 2050 152 0.1985 0.2851 REMARK 3 9 3.3015 - 3.1746 1.00 2054 146 0.2060 0.2780 REMARK 3 10 3.1746 - 3.0652 0.99 2065 138 0.2243 0.2514 REMARK 3 11 3.0652 - 2.9695 0.94 1964 133 0.2269 0.3002 REMARK 3 12 2.9695 - 2.8847 0.86 1810 134 0.2423 0.2771 REMARK 3 13 2.8847 - 2.8089 0.78 1597 122 0.2445 0.3017 REMARK 3 14 2.8089 - 2.7404 0.68 1433 93 0.2456 0.3027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7873 REMARK 3 ANGLE : 0.927 10625 REMARK 3 CHIRALITY : 0.061 1130 REMARK 3 PLANARITY : 0.005 1371 REMARK 3 DIHEDRAL : 14.000 2947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 26.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.260 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 11.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 3.275 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3S5B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 18% PEG3350 , PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.22100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 113 REMARK 465 GLU C 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 148 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 148 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 148 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 148 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG D 401 O HOH D 530 1.16 REMARK 500 O ASP B 85 O HOH B 507 1.94 REMARK 500 NZ LYS C 302 O HOH C 513 1.99 REMARK 500 O LYS B 222 O HOH B 519 2.07 REMARK 500 O ALA A 112 N GLY A 114 2.09 REMARK 500 O ARG C 146 O HOH C 518 2.16 REMARK 500 OE2 GLU A 298 O HOH A 540 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 179 -89.91 -142.30 REMARK 500 ASP A 182 -89.04 -134.29 REMARK 500 LYS A 297 111.39 -167.67 REMARK 500 PRO B 173 109.70 -57.62 REMARK 500 PHE B 179 -85.64 -142.57 REMARK 500 ASP B 182 -87.46 -128.44 REMARK 500 ASN C 79 61.39 35.44 REMARK 500 PHE C 179 -81.73 -136.31 REMARK 500 ASP C 182 -59.61 -135.81 REMARK 500 ASP C 264 -9.13 -58.21 REMARK 500 PHE D 179 -75.69 -130.45 REMARK 500 ASP D 182 -82.55 -127.64 REMARK 500 PRO D 247 108.84 -52.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 180 OD1 REMARK 620 2 HOH A 532 O 99.4 REMARK 620 3 HOH A 541 O 80.6 112.7 REMARK 620 4 HOH A 542 O 141.1 117.3 73.7 REMARK 620 5 HOH A 546 O 84.7 136.5 110.7 77.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 180 OD1 REMARK 620 2 HOH B 540 O 104.7 REMARK 620 3 HOH B 555 O 89.1 136.8 REMARK 620 4 HOH B 559 O 169.4 83.3 89.8 REMARK 620 5 HOH B 560 O 81.1 113.6 108.9 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 180 OD1 REMARK 620 2 HOH C 535 O 82.1 REMARK 620 3 HOH C 536 O 85.8 109.9 REMARK 620 4 HOH C 539 O 159.6 81.2 88.8 REMARK 620 5 HOH C 541 O 85.3 106.1 141.3 110.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 180 OD1 REMARK 620 2 HOH D 523 O 61.2 REMARK 620 3 HOH D 524 O 92.5 82.1 REMARK 620 4 HOH D 525 O 134.0 73.2 86.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S5B RELATED DB: PDB REMARK 900 ONE ADDITIONAL MUTATION Q130K WAS INTRODUCED DBREF 4QN0 A 64 302 UNP Q95NM6 NUCG_CAEEL 64 302 DBREF 4QN0 B 64 302 UNP Q95NM6 NUCG_CAEEL 64 302 DBREF 4QN0 C 64 302 UNP Q95NM6 NUCG_CAEEL 64 302 DBREF 4QN0 D 64 302 UNP Q95NM6 NUCG_CAEEL 64 302 SEQADV 4QN0 LYS A 130 UNP Q95NM6 GLN 130 ENGINEERED MUTATION SEQADV 4QN0 LYS B 130 UNP Q95NM6 GLN 130 ENGINEERED MUTATION SEQADV 4QN0 LYS C 130 UNP Q95NM6 GLN 130 ENGINEERED MUTATION SEQADV 4QN0 LYS D 130 UNP Q95NM6 GLN 130 ENGINEERED MUTATION SEQRES 1 A 239 SER ARG SER ALA GLU ILE MET LYS HIS GLY TYR PRO GLY SEQRES 2 A 239 PHE THR ASN VAL ARG THR TYR GLU ASP PHE VAL LEU SER SEQRES 3 A 239 TYR ASP TYR LYS THR ARG THR ALA HIS TRP VAL CYS GLU SEQRES 4 A 239 HIS LEU THR PRO GLU ARG LEU LYS HIS ALA GLU GLY VAL SEQRES 5 A 239 ASP ARG LYS LEU CYS GLU PHE LYS PRO ASP ILE THR PHE SEQRES 6 A 239 PRO LYS LYS PHE LEU SER GLN ASN THR ASP TYR LYS CYS SEQRES 7 A 239 SER GLY PHE ASP ARG GLY HIS LEU ALA ALA ALA GLY ASN SEQRES 8 A 239 HIS ARG LYS SER GLN LEU ALA VAL ASP GLN THR PHE TYR SEQRES 9 A 239 LEU SER ASN MET SER PRO GLN VAL GLY ARG GLY PHE ASN SEQRES 10 A 239 ARG ASP LYS TRP ASN ASP LEU GLU MET HIS CYS ARG ARG SEQRES 11 A 239 VAL ALA LYS LYS MET ILE ASN SER TYR ILE ILE THR GLY SEQRES 12 A 239 PRO LEU TYR LEU PRO LYS LEU GLU GLY ASP GLY LYS LYS SEQRES 13 A 239 TYR ILE LYS TYR GLN VAL ILE GLY ASP ASN ASN VAL ALA SEQRES 14 A 239 VAL PRO THR HIS PHE PHE LYS VAL ALA LEU PHE GLU VAL SEQRES 15 A 239 THR PRO GLY LYS PHE GLU LEU GLU SER TYR ILE LEU PRO SEQRES 16 A 239 ASN ALA VAL ILE GLU ASP THR VAL GLU ILE SER LYS PHE SEQRES 17 A 239 HIS VAL PRO LEU ASP ALA VAL GLU ARG SER ALA GLY LEU SEQRES 18 A 239 GLU ILE PHE ALA ARG LEU ASP PRO LYS SER ILE VAL LYS SEQRES 19 A 239 GLU ASN GLY ALA LYS SEQRES 1 B 239 SER ARG SER ALA GLU ILE MET LYS HIS GLY TYR PRO GLY SEQRES 2 B 239 PHE THR ASN VAL ARG THR TYR GLU ASP PHE VAL LEU SER SEQRES 3 B 239 TYR ASP TYR LYS THR ARG THR ALA HIS TRP VAL CYS GLU SEQRES 4 B 239 HIS LEU THR PRO GLU ARG LEU LYS HIS ALA GLU GLY VAL SEQRES 5 B 239 ASP ARG LYS LEU CYS GLU PHE LYS PRO ASP ILE THR PHE SEQRES 6 B 239 PRO LYS LYS PHE LEU SER GLN ASN THR ASP TYR LYS CYS SEQRES 7 B 239 SER GLY PHE ASP ARG GLY HIS LEU ALA ALA ALA GLY ASN SEQRES 8 B 239 HIS ARG LYS SER GLN LEU ALA VAL ASP GLN THR PHE TYR SEQRES 9 B 239 LEU SER ASN MET SER PRO GLN VAL GLY ARG GLY PHE ASN SEQRES 10 B 239 ARG ASP LYS TRP ASN ASP LEU GLU MET HIS CYS ARG ARG SEQRES 11 B 239 VAL ALA LYS LYS MET ILE ASN SER TYR ILE ILE THR GLY SEQRES 12 B 239 PRO LEU TYR LEU PRO LYS LEU GLU GLY ASP GLY LYS LYS SEQRES 13 B 239 TYR ILE LYS TYR GLN VAL ILE GLY ASP ASN ASN VAL ALA SEQRES 14 B 239 VAL PRO THR HIS PHE PHE LYS VAL ALA LEU PHE GLU VAL SEQRES 15 B 239 THR PRO GLY LYS PHE GLU LEU GLU SER TYR ILE LEU PRO SEQRES 16 B 239 ASN ALA VAL ILE GLU ASP THR VAL GLU ILE SER LYS PHE SEQRES 17 B 239 HIS VAL PRO LEU ASP ALA VAL GLU ARG SER ALA GLY LEU SEQRES 18 B 239 GLU ILE PHE ALA ARG LEU ASP PRO LYS SER ILE VAL LYS SEQRES 19 B 239 GLU ASN GLY ALA LYS SEQRES 1 C 239 SER ARG SER ALA GLU ILE MET LYS HIS GLY TYR PRO GLY SEQRES 2 C 239 PHE THR ASN VAL ARG THR TYR GLU ASP PHE VAL LEU SER SEQRES 3 C 239 TYR ASP TYR LYS THR ARG THR ALA HIS TRP VAL CYS GLU SEQRES 4 C 239 HIS LEU THR PRO GLU ARG LEU LYS HIS ALA GLU GLY VAL SEQRES 5 C 239 ASP ARG LYS LEU CYS GLU PHE LYS PRO ASP ILE THR PHE SEQRES 6 C 239 PRO LYS LYS PHE LEU SER GLN ASN THR ASP TYR LYS CYS SEQRES 7 C 239 SER GLY PHE ASP ARG GLY HIS LEU ALA ALA ALA GLY ASN SEQRES 8 C 239 HIS ARG LYS SER GLN LEU ALA VAL ASP GLN THR PHE TYR SEQRES 9 C 239 LEU SER ASN MET SER PRO GLN VAL GLY ARG GLY PHE ASN SEQRES 10 C 239 ARG ASP LYS TRP ASN ASP LEU GLU MET HIS CYS ARG ARG SEQRES 11 C 239 VAL ALA LYS LYS MET ILE ASN SER TYR ILE ILE THR GLY SEQRES 12 C 239 PRO LEU TYR LEU PRO LYS LEU GLU GLY ASP GLY LYS LYS SEQRES 13 C 239 TYR ILE LYS TYR GLN VAL ILE GLY ASP ASN ASN VAL ALA SEQRES 14 C 239 VAL PRO THR HIS PHE PHE LYS VAL ALA LEU PHE GLU VAL SEQRES 15 C 239 THR PRO GLY LYS PHE GLU LEU GLU SER TYR ILE LEU PRO SEQRES 16 C 239 ASN ALA VAL ILE GLU ASP THR VAL GLU ILE SER LYS PHE SEQRES 17 C 239 HIS VAL PRO LEU ASP ALA VAL GLU ARG SER ALA GLY LEU SEQRES 18 C 239 GLU ILE PHE ALA ARG LEU ASP PRO LYS SER ILE VAL LYS SEQRES 19 C 239 GLU ASN GLY ALA LYS SEQRES 1 D 239 SER ARG SER ALA GLU ILE MET LYS HIS GLY TYR PRO GLY SEQRES 2 D 239 PHE THR ASN VAL ARG THR TYR GLU ASP PHE VAL LEU SER SEQRES 3 D 239 TYR ASP TYR LYS THR ARG THR ALA HIS TRP VAL CYS GLU SEQRES 4 D 239 HIS LEU THR PRO GLU ARG LEU LYS HIS ALA GLU GLY VAL SEQRES 5 D 239 ASP ARG LYS LEU CYS GLU PHE LYS PRO ASP ILE THR PHE SEQRES 6 D 239 PRO LYS LYS PHE LEU SER GLN ASN THR ASP TYR LYS CYS SEQRES 7 D 239 SER GLY PHE ASP ARG GLY HIS LEU ALA ALA ALA GLY ASN SEQRES 8 D 239 HIS ARG LYS SER GLN LEU ALA VAL ASP GLN THR PHE TYR SEQRES 9 D 239 LEU SER ASN MET SER PRO GLN VAL GLY ARG GLY PHE ASN SEQRES 10 D 239 ARG ASP LYS TRP ASN ASP LEU GLU MET HIS CYS ARG ARG SEQRES 11 D 239 VAL ALA LYS LYS MET ILE ASN SER TYR ILE ILE THR GLY SEQRES 12 D 239 PRO LEU TYR LEU PRO LYS LEU GLU GLY ASP GLY LYS LYS SEQRES 13 D 239 TYR ILE LYS TYR GLN VAL ILE GLY ASP ASN ASN VAL ALA SEQRES 14 D 239 VAL PRO THR HIS PHE PHE LYS VAL ALA LEU PHE GLU VAL SEQRES 15 D 239 THR PRO GLY LYS PHE GLU LEU GLU SER TYR ILE LEU PRO SEQRES 16 D 239 ASN ALA VAL ILE GLU ASP THR VAL GLU ILE SER LYS PHE SEQRES 17 D 239 HIS VAL PRO LEU ASP ALA VAL GLU ARG SER ALA GLY LEU SEQRES 18 D 239 GLU ILE PHE ALA ARG LEU ASP PRO LYS SER ILE VAL LYS SEQRES 19 D 239 GLU ASN GLY ALA LYS HET MG A 401 1 HET MG B 401 1 HET MG C 401 1 HET MG D 401 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 4(MG 2+) FORMUL 9 HOH *179(H2 O) HELIX 1 1 SER A 64 MET A 70 1 7 HELIX 2 2 LYS A 71 GLY A 73 5 3 HELIX 3 3 PRO A 106 LYS A 110 5 5 HELIX 4 4 ASP A 116 CYS A 120 5 5 HELIX 5 5 PRO A 129 LEU A 133 5 5 HELIX 6 6 GLN A 135 LYS A 140 1 6 HELIX 7 7 ALA A 151 HIS A 155 5 5 HELIX 8 8 SER A 158 THR A 165 1 8 HELIX 9 9 PHE A 166 SER A 169 5 4 HELIX 10 10 ASP A 182 LYS A 196 1 15 HELIX 11 11 GLU A 267 HIS A 272 5 6 HELIX 12 12 PRO A 274 GLY A 283 1 10 HELIX 13 13 ASP A 291 LYS A 293 5 3 HELIX 14 14 ARG B 65 MET B 70 1 6 HELIX 15 15 ASP B 116 CYS B 120 5 5 HELIX 16 16 PRO B 129 LEU B 133 5 5 HELIX 17 17 GLN B 135 LYS B 140 1 6 HELIX 18 18 ALA B 151 HIS B 155 5 5 HELIX 19 19 SER B 158 THR B 165 1 8 HELIX 20 20 PHE B 166 SER B 169 5 4 HELIX 21 21 ASP B 182 LYS B 196 1 15 HELIX 22 22 GLU B 267 HIS B 272 5 6 HELIX 23 23 PRO B 274 GLY B 283 1 10 HELIX 24 24 ASP B 291 LYS B 293 5 3 HELIX 25 25 ARG C 65 MET C 70 1 6 HELIX 26 26 PRO C 106 LYS C 110 5 5 HELIX 27 27 ASP C 116 CYS C 120 5 5 HELIX 28 28 PRO C 129 LEU C 133 5 5 HELIX 29 29 GLN C 135 LYS C 140 1 6 HELIX 30 30 ALA C 151 HIS C 155 5 5 HELIX 31 31 SER C 158 THR C 165 1 8 HELIX 32 32 PHE C 166 SER C 169 5 4 HELIX 33 33 LYS C 183 LYS C 196 1 14 HELIX 34 34 GLU C 267 HIS C 272 5 6 HELIX 35 35 PRO C 274 GLY C 283 1 10 HELIX 36 36 ASP C 291 LYS C 293 5 3 HELIX 37 37 ARG D 65 MET D 70 1 6 HELIX 38 38 PRO D 106 LYS D 110 5 5 HELIX 39 39 ASP D 116 CYS D 120 5 5 HELIX 40 40 PRO D 129 LEU D 133 5 5 HELIX 41 41 GLN D 135 LYS D 140 1 6 HELIX 42 42 ALA D 151 HIS D 155 5 5 HELIX 43 43 SER D 158 THR D 165 1 8 HELIX 44 44 PHE D 166 SER D 169 5 4 HELIX 45 45 ASP D 182 LYS D 196 1 15 HELIX 46 46 GLU D 267 HIS D 272 5 6 HELIX 47 47 PRO D 274 GLY D 283 1 10 HELIX 48 48 ASP D 291 LYS D 293 5 3 SHEET 1 A 7 VAL A 80 THR A 82 0 SHEET 2 A 7 VAL A 87 ASP A 91 -1 O LEU A 88 N ARG A 81 SHEET 3 A 7 THR A 96 LEU A 104 -1 O HIS A 98 N SER A 89 SHEET 4 A 7 ASN A 200 LEU A 208 -1 O SER A 201 N LEU A 104 SHEET 5 A 7 HIS A 236 THR A 246 -1 O GLU A 244 N ASN A 200 SHEET 6 A 7 LYS A 249 PRO A 258 -1 O GLU A 251 N PHE A 243 SHEET 7 A 7 ILE A 295 GLU A 298 1 O LYS A 297 N LEU A 252 SHEET 1 B 2 ASP A 145 HIS A 148 0 SHEET 2 B 2 MET A 171 GLN A 174 -1 O GLN A 174 N ASP A 145 SHEET 1 C 4 LYS A 212 LEU A 213 0 SHEET 2 C 4 LYS A 219 ILE A 226 -1 O TYR A 220 N LYS A 212 SHEET 3 C 4 LYS C 219 ILE C 226 -1 O ILE C 221 N TYR A 223 SHEET 4 C 4 LYS C 212 LEU C 213 -1 N LYS C 212 O TYR C 220 SHEET 1 D 4 VAL A 231 ALA A 232 0 SHEET 2 D 4 LYS A 219 ILE A 226 -1 N ILE A 226 O VAL A 231 SHEET 3 D 4 LYS C 219 ILE C 226 -1 O ILE C 221 N TYR A 223 SHEET 4 D 4 VAL C 231 ALA C 232 -1 O VAL C 231 N ILE C 226 SHEET 1 E 7 VAL B 80 THR B 82 0 SHEET 2 E 7 PHE B 86 ASP B 91 -1 O LEU B 88 N ARG B 81 SHEET 3 E 7 THR B 96 LEU B 104 -1 O CYS B 101 N VAL B 87 SHEET 4 E 7 ASN B 200 LEU B 208 -1 O SER B 201 N LEU B 104 SHEET 5 E 7 HIS B 236 THR B 246 -1 O LEU B 242 N TYR B 202 SHEET 6 E 7 LYS B 249 PRO B 258 -1 O GLU B 251 N PHE B 243 SHEET 7 E 7 ILE B 295 GLU B 298 1 O LYS B 297 N LEU B 252 SHEET 1 F 2 ASP B 145 HIS B 148 0 SHEET 2 F 2 MET B 171 GLN B 174 -1 O GLN B 174 N ASP B 145 SHEET 1 G 4 PRO B 211 LEU B 213 0 SHEET 2 G 4 LYS B 219 ILE B 226 -1 O TYR B 220 N LYS B 212 SHEET 3 G 4 LYS D 219 ILE D 226 -1 O TYR D 223 N ILE B 221 SHEET 4 G 4 LYS D 212 LEU D 213 -1 N LYS D 212 O TYR D 220 SHEET 1 H 4 VAL B 231 ALA B 232 0 SHEET 2 H 4 LYS B 219 ILE B 226 -1 N ILE B 226 O VAL B 231 SHEET 3 H 4 LYS D 219 ILE D 226 -1 O TYR D 223 N ILE B 221 SHEET 4 H 4 VAL D 231 ALA D 232 -1 O VAL D 231 N ILE D 226 SHEET 1 I 7 VAL C 80 THR C 82 0 SHEET 2 I 7 VAL C 87 ASP C 91 -1 O LEU C 88 N ARG C 81 SHEET 3 I 7 THR C 96 LEU C 104 -1 O HIS C 98 N SER C 89 SHEET 4 I 7 SER C 201 LEU C 208 -1 O SER C 201 N LEU C 104 SHEET 5 I 7 HIS C 236 THR C 246 -1 O LEU C 242 N TYR C 202 SHEET 6 I 7 LYS C 249 PRO C 258 -1 O GLU C 253 N ALA C 241 SHEET 7 I 7 ILE C 295 GLU C 298 1 O LYS C 297 N LEU C 252 SHEET 1 J 2 ASP C 145 HIS C 148 0 SHEET 2 J 2 MET C 171 GLN C 174 -1 O GLN C 174 N ASP C 145 SHEET 1 K 7 VAL D 80 THR D 82 0 SHEET 2 K 7 PHE D 86 ASP D 91 -1 O LEU D 88 N ARG D 81 SHEET 3 K 7 THR D 96 LEU D 104 -1 O HIS D 98 N SER D 89 SHEET 4 K 7 SER D 201 LEU D 208 -1 O SER D 201 N LEU D 104 SHEET 5 K 7 HIS D 236 THR D 246 -1 O PHE D 238 N GLY D 206 SHEET 6 K 7 LYS D 249 PRO D 258 -1 O GLU D 251 N PHE D 243 SHEET 7 K 7 ILE D 295 GLU D 298 1 O LYS D 297 N LEU D 252 SHEET 1 L 2 ASP D 145 HIS D 148 0 SHEET 2 L 2 MET D 171 GLN D 174 -1 O GLN D 174 N ASP D 145 LINK OD1 ASN A 180 MG MG A 401 1555 1555 2.38 LINK MG MG A 401 O HOH A 532 1555 1555 2.04 LINK MG MG A 401 O HOH A 541 1555 1555 2.32 LINK MG MG A 401 O HOH A 542 1555 1555 2.36 LINK MG MG A 401 O HOH A 546 1555 1555 1.71 LINK OD1 ASN B 180 MG MG B 401 1555 1555 2.07 LINK MG MG B 401 O HOH B 540 1555 1555 2.64 LINK MG MG B 401 O HOH B 555 1555 1555 2.54 LINK MG MG B 401 O HOH B 559 1555 1555 2.44 LINK MG MG B 401 O HOH B 560 1555 1555 2.78 LINK OD1 ASN C 180 MG MG C 401 1555 1555 2.34 LINK MG MG C 401 O HOH C 535 1555 1555 2.60 LINK MG MG C 401 O HOH C 536 1555 1555 1.96 LINK MG MG C 401 O HOH C 539 1555 1555 2.85 LINK MG MG C 401 O HOH C 541 1555 1555 1.87 LINK OD1 ASN D 180 MG MG D 401 1555 1555 2.34 LINK MG MG D 401 O HOH D 523 1555 1555 2.79 LINK MG MG D 401 O HOH D 524 1555 1555 2.67 LINK MG MG D 401 O HOH D 525 1555 1555 2.65 SITE 1 AC1 6 HIS A 148 ASN A 180 HOH A 532 HOH A 541 SITE 2 AC1 6 HOH A 542 HOH A 546 SITE 1 AC2 5 ASN B 180 HOH B 540 HOH B 555 HOH B 559 SITE 2 AC2 5 HOH B 560 SITE 1 AC3 5 ASN C 180 HOH C 535 HOH C 536 HOH C 539 SITE 2 AC3 5 HOH C 541 SITE 1 AC4 5 ASN D 180 HOH D 523 HOH D 524 HOH D 525 SITE 2 AC4 5 HOH D 530 CRYST1 67.550 122.442 73.522 90.00 96.02 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014804 0.000000 0.001561 0.00000 SCALE2 0.000000 0.008167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013677 0.00000