HEADER HYDROLASE 17-JUN-14 4QN5 TITLE NEURAMINIDASE N5 BINDS LSTA AT THE SECOND SIA BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 79-473; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/MALLARD SOURCE 3 DUCK/ALB/60/1976(H12N5)); SOURCE 4 ORGANISM_TAXID: 352705; SOURCE 5 GENE: NA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS 6-BLADED BETA-PROPELLER, HYDROLASE, CALCIUM BINDING, GLYCOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR X.SUN,Q.LI,Y.WU,Y.LIU,J.QI,C.J.VAVRICKA,G.F.GAO REVDAT 6 30-OCT-24 4QN5 1 REMARK REVDAT 5 08-NOV-23 4QN5 1 REMARK REVDAT 4 24-AUG-22 4QN5 1 JRNL HETSYN REVDAT 3 29-JUL-20 4QN5 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 06-AUG-14 4QN5 1 REMARK REVDAT 1 30-JUL-14 4QN5 0 JRNL AUTH X.SUN,Q.LI,Y.WU,M.WANG,Y.LIU,J.QI,C.J.VAVRICKA,G.F.GAO JRNL TITL STRUCTURE OF INFLUENZA VIRUS N7: THE LAST PIECE OF THE JRNL TITL 2 NEURAMINIDASE "JIGSAW" PUZZLE. JRNL REF J.VIROL. V. 88 9197 2014 JRNL REFN ESSN 1098-5514 JRNL PMID 24899180 JRNL DOI 10.1128/JVI.00805-14 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 88296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9733 - 5.2784 0.99 2973 162 0.1532 0.1743 REMARK 3 2 5.2784 - 4.1908 1.00 2933 143 0.1081 0.1474 REMARK 3 3 4.1908 - 3.6613 1.00 2937 153 0.1100 0.1612 REMARK 3 4 3.6613 - 3.3267 1.00 2911 154 0.1134 0.1412 REMARK 3 5 3.3267 - 3.0884 1.00 2928 129 0.1285 0.1599 REMARK 3 6 3.0884 - 2.9063 0.99 2885 128 0.1275 0.1966 REMARK 3 7 2.9063 - 2.7608 0.98 2843 169 0.1264 0.1686 REMARK 3 8 2.7608 - 2.6406 0.99 2859 159 0.1255 0.1692 REMARK 3 9 2.6406 - 2.5390 0.99 2858 164 0.1238 0.2026 REMARK 3 10 2.5390 - 2.4514 0.99 2831 175 0.1145 0.1697 REMARK 3 11 2.4514 - 2.3747 0.99 2834 158 0.1106 0.1732 REMARK 3 12 2.3747 - 2.3069 0.99 2887 142 0.0999 0.1444 REMARK 3 13 2.3069 - 2.2461 0.99 2860 127 0.0971 0.1509 REMARK 3 14 2.2461 - 2.1913 0.99 2870 162 0.0967 0.1682 REMARK 3 15 2.1913 - 2.1415 0.99 2834 149 0.0943 0.1467 REMARK 3 16 2.1415 - 2.0959 0.99 2847 167 0.0982 0.1831 REMARK 3 17 2.0959 - 2.0540 0.99 2873 142 0.0999 0.1862 REMARK 3 18 2.0540 - 2.0153 0.98 2836 129 0.1005 0.1645 REMARK 3 19 2.0153 - 1.9793 0.99 2811 148 0.0994 0.1761 REMARK 3 20 1.9793 - 1.9457 0.95 2791 146 0.0965 0.1706 REMARK 3 21 1.9457 - 1.9143 0.96 2752 126 0.0997 0.1906 REMARK 3 22 1.9143 - 1.8849 0.95 2744 146 0.1041 0.1967 REMARK 3 23 1.8849 - 1.8572 0.94 2708 133 0.1070 0.2133 REMARK 3 24 1.8572 - 1.8310 0.93 2683 163 0.1050 0.1898 REMARK 3 25 1.8310 - 1.8063 0.92 2607 152 0.1091 0.2047 REMARK 3 26 1.8063 - 1.7828 0.91 2667 132 0.1057 0.2045 REMARK 3 27 1.7828 - 1.7605 0.90 2594 117 0.1117 0.2376 REMARK 3 28 1.7605 - 1.7393 0.90 2589 145 0.1057 0.1932 REMARK 3 29 1.7393 - 1.7191 0.91 2590 149 0.1109 0.2312 REMARK 3 30 1.7191 - 1.6998 0.89 2557 135 0.1236 0.2184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 31.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07370 REMARK 3 B22 (A**2) : -0.07370 REMARK 3 B33 (A**2) : 0.14740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6442 REMARK 3 ANGLE : 1.043 8739 REMARK 3 CHIRALITY : 0.134 964 REMARK 3 PLANARITY : 0.003 1113 REMARK 3 DIHEDRAL : 20.618 2316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 12%(W/V) POLYETHYLENE REMARK 280 GLYCOL 3350, PH 7.5, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 112.25100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -112.25100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -112.25100 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 112.25100 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1048 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1056 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1062 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 852 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 395 REMARK 465 MET B 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 GAL E 1 C3 SIA E 2 2.06 REMARK 500 O6 GAL C 1 C3 SIA C 2 2.09 REMARK 500 ND2 ASN A 65 C2 NAG A 603 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 97 134.33 -170.24 REMARK 500 ASP A 120 50.19 -160.43 REMARK 500 THR A 145 -154.97 -132.94 REMARK 500 ALA A 170 -169.86 -120.34 REMARK 500 PHE A 190 62.69 -151.16 REMARK 500 TRP A 215 -98.95 -117.01 REMARK 500 ASP A 226 -169.09 -111.16 REMARK 500 ALA A 238 135.58 -39.72 REMARK 500 THR A 307 49.40 -76.78 REMARK 500 SER A 324 -135.36 -109.40 REMARK 500 TRP A 380 -158.73 -160.51 REMARK 500 ALA B 97 134.23 -172.04 REMARK 500 ASP B 120 48.19 -162.56 REMARK 500 THR B 145 -153.92 -135.49 REMARK 500 ALA B 170 -168.22 -125.10 REMARK 500 PHE B 190 61.42 -151.88 REMARK 500 TRP B 215 -98.80 -113.34 REMARK 500 SER B 324 -136.65 -112.00 REMARK 500 TRP B 380 -159.55 -160.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 O REMARK 620 2 GLY A 217 O 88.5 REMARK 620 3 ASP A 243 OD2 92.2 91.4 REMARK 620 4 TYR A 268 O 91.0 162.6 106.0 REMARK 620 5 HOH A 701 O 98.4 80.5 166.4 82.4 REMARK 620 6 HOH A 703 O 176.3 94.2 90.3 85.7 79.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 213 O REMARK 620 2 GLY B 217 O 86.0 REMARK 620 3 ASP B 243 OD2 90.3 90.2 REMARK 620 4 TYR B 268 O 92.3 163.3 106.4 REMARK 620 5 HOH B 703 O 97.2 80.5 167.6 83.3 REMARK 620 6 HOH B 709 O 176.5 95.0 93.0 85.8 79.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QN3 RELATED DB: PDB REMARK 900 RELATED ID: 4QN4 RELATED DB: PDB REMARK 900 RELATED ID: 4QN6 RELATED DB: PDB REMARK 900 RELATED ID: 4QN7 RELATED DB: PDB DBREF 4QN5 A 1 395 UNP Q20UH7 Q20UH7_9INFA 79 473 DBREF 4QN5 B 1 395 UNP Q20UH7 Q20UH7_9INFA 79 473 SEQRES 1 A 395 PRO GLU PHE LEU ASN ASN THR GLU PRO LEU CYS ASN VAL SEQRES 2 A 395 SER GLY PHE ALA ILE VAL SER LYS ASP ASN GLY ILE ARG SEQRES 3 A 395 ILE GLY SER ARG GLY HIS VAL PHE VAL ILE ARG GLU PRO SEQRES 4 A 395 PHE VAL ALA CYS GLY PRO THR GLU CYS ARG THR PHE PHE SEQRES 5 A 395 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 A 395 ASN THR VAL LYS ASP ARG SER PRO TYR ARG ALA LEU MET SEQRES 7 A 395 SER VAL PRO LEU GLY SER SER PRO ASN ALA TYR GLN ALA SEQRES 8 A 395 LYS PHE GLU SER VAL ALA TRP SER ALA THR ALA CYS HIS SEQRES 9 A 395 ASP GLY LYS LYS TRP LEU ALA VAL GLY ILE SER GLY ALA SEQRES 10 A 395 ASP ASP ASP ALA TYR ALA VAL ILE HIS TYR GLY GLY MET SEQRES 11 A 395 PRO THR ASP VAL VAL ARG SER TRP ARG LYS GLN ILE LEU SEQRES 12 A 395 ARG THR GLN GLU SER SER CYS VAL CYS MET ASN GLY ASN SEQRES 13 A 395 CYS TYR TRP VAL MET THR ASP GLY PRO ALA ASN SER GLN SEQRES 14 A 395 ALA SER TYR LYS ILE PHE LYS SER HIS GLU GLY MET VAL SEQRES 15 A 395 THR ASN GLU ARG GLU VAL SER PHE GLN GLY GLY HIS ILE SEQRES 16 A 395 GLU GLU CYS SER CYS TYR PRO ASN LEU GLY LYS VAL GLU SEQRES 17 A 395 CYS VAL CYS ARG ASP ASN TRP ASN GLY MET ASN ARG PRO SEQRES 18 A 395 ILE LEU ILE PHE ASP GLU ASP LEU ASP TYR GLU VAL GLY SEQRES 19 A 395 TYR LEU CYS ALA GLY ILE PRO THR ASP THR PRO ARG VAL SEQRES 20 A 395 GLN ASP SER SER PHE THR GLY SER CYS THR ASN ALA VAL SEQRES 21 A 395 GLY GLY SER GLY THR ASN ASN TYR GLY VAL LYS GLY PHE SEQRES 22 A 395 GLY PHE ARG GLN GLY ASN SER VAL TRP ALA GLY ARG THR SEQRES 23 A 395 VAL SER ILE SER SER ARG SER GLY PHE GLU ILE LEU LEU SEQRES 24 A 395 ILE GLU ASP GLY TRP ILE ARG THR SER LYS THR ILE VAL SEQRES 25 A 395 LYS LYS VAL GLU VAL LEU ASN ASN LYS ASN TRP SER GLY SEQRES 26 A 395 TYR SER GLY ALA PHE THR ILE PRO ILE THR MET THR SER SEQRES 27 A 395 LYS GLN CYS LEU VAL PRO CYS PHE TRP LEU GLU MET ILE SEQRES 28 A 395 ARG GLY LYS PRO GLU GLU ARG THR SER ILE TRP THR SER SEQRES 29 A 395 SER SER SER THR VAL PHE CYS GLY VAL SER SER GLU VAL SEQRES 30 A 395 PRO GLY TRP SER TRP ASP ASP GLY ALA ILE LEU PRO PHE SEQRES 31 A 395 ASP ILE ASP LYS MET SEQRES 1 B 395 PRO GLU PHE LEU ASN ASN THR GLU PRO LEU CYS ASN VAL SEQRES 2 B 395 SER GLY PHE ALA ILE VAL SER LYS ASP ASN GLY ILE ARG SEQRES 3 B 395 ILE GLY SER ARG GLY HIS VAL PHE VAL ILE ARG GLU PRO SEQRES 4 B 395 PHE VAL ALA CYS GLY PRO THR GLU CYS ARG THR PHE PHE SEQRES 5 B 395 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 B 395 ASN THR VAL LYS ASP ARG SER PRO TYR ARG ALA LEU MET SEQRES 7 B 395 SER VAL PRO LEU GLY SER SER PRO ASN ALA TYR GLN ALA SEQRES 8 B 395 LYS PHE GLU SER VAL ALA TRP SER ALA THR ALA CYS HIS SEQRES 9 B 395 ASP GLY LYS LYS TRP LEU ALA VAL GLY ILE SER GLY ALA SEQRES 10 B 395 ASP ASP ASP ALA TYR ALA VAL ILE HIS TYR GLY GLY MET SEQRES 11 B 395 PRO THR ASP VAL VAL ARG SER TRP ARG LYS GLN ILE LEU SEQRES 12 B 395 ARG THR GLN GLU SER SER CYS VAL CYS MET ASN GLY ASN SEQRES 13 B 395 CYS TYR TRP VAL MET THR ASP GLY PRO ALA ASN SER GLN SEQRES 14 B 395 ALA SER TYR LYS ILE PHE LYS SER HIS GLU GLY MET VAL SEQRES 15 B 395 THR ASN GLU ARG GLU VAL SER PHE GLN GLY GLY HIS ILE SEQRES 16 B 395 GLU GLU CYS SER CYS TYR PRO ASN LEU GLY LYS VAL GLU SEQRES 17 B 395 CYS VAL CYS ARG ASP ASN TRP ASN GLY MET ASN ARG PRO SEQRES 18 B 395 ILE LEU ILE PHE ASP GLU ASP LEU ASP TYR GLU VAL GLY SEQRES 19 B 395 TYR LEU CYS ALA GLY ILE PRO THR ASP THR PRO ARG VAL SEQRES 20 B 395 GLN ASP SER SER PHE THR GLY SER CYS THR ASN ALA VAL SEQRES 21 B 395 GLY GLY SER GLY THR ASN ASN TYR GLY VAL LYS GLY PHE SEQRES 22 B 395 GLY PHE ARG GLN GLY ASN SER VAL TRP ALA GLY ARG THR SEQRES 23 B 395 VAL SER ILE SER SER ARG SER GLY PHE GLU ILE LEU LEU SEQRES 24 B 395 ILE GLU ASP GLY TRP ILE ARG THR SER LYS THR ILE VAL SEQRES 25 B 395 LYS LYS VAL GLU VAL LEU ASN ASN LYS ASN TRP SER GLY SEQRES 26 B 395 TYR SER GLY ALA PHE THR ILE PRO ILE THR MET THR SER SEQRES 27 B 395 LYS GLN CYS LEU VAL PRO CYS PHE TRP LEU GLU MET ILE SEQRES 28 B 395 ARG GLY LYS PRO GLU GLU ARG THR SER ILE TRP THR SER SEQRES 29 B 395 SER SER SER THR VAL PHE CYS GLY VAL SER SER GLU VAL SEQRES 30 B 395 PRO GLY TRP SER TRP ASP ASP GLY ALA ILE LEU PRO PHE SEQRES 31 B 395 ASP ILE ASP LYS MET MODRES 4QN5 ASN A 65 ASN GLYCOSYLATION SITE MODRES 4QN5 ASN A 12 ASN GLYCOSYLATION SITE MODRES 4QN5 ASN B 12 ASN GLYCOSYLATION SITE MODRES 4QN5 ASN B 65 ASN GLYCOSYLATION SITE HET GAL C 1 12 HET SIA C 2 20 HET NAG D 1 14 HET NAG D 2 14 HET GAL E 1 12 HET SIA E 2 20 HET CA A 601 1 HET NAG A 602 14 HET NAG A 603 14 HET SIA A 604 21 HET CA B 601 1 HET NAG B 604 14 HET SIA B 605 21 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 SIA 4(C11 H19 N O9) FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 6 CA 2(CA 2+) FORMUL 13 HOH *743(H2 O) HELIX 1 1 ASN A 23 GLY A 28 1 6 HELIX 2 2 ASP A 61 ASN A 65 5 5 HELIX 3 3 GLN A 248 PHE A 252 5 5 HELIX 4 4 PRO A 333 SER A 338 1 6 HELIX 5 5 PHE A 390 LYS A 394 5 5 HELIX 6 6 ASN B 23 GLY B 28 1 6 HELIX 7 7 ASP B 61 ASN B 65 5 5 HELIX 8 8 GLN B 248 PHE B 252 5 5 HELIX 9 9 PRO B 333 SER B 338 1 6 HELIX 10 10 PHE B 390 LYS B 394 5 5 SHEET 1 A 4 GLY A 15 LYS A 21 0 SHEET 2 A 4 THR A 363 VAL A 373 -1 O VAL A 369 N VAL A 19 SHEET 3 A 4 VAL A 343 GLY A 353 -1 N PHE A 346 O PHE A 370 SHEET 4 A 4 SER A 327 ILE A 332 -1 N PHE A 330 O CYS A 345 SHEET 1 B 4 PHE A 34 CYS A 43 0 SHEET 2 B 4 CYS A 48 LEU A 58 -1 O PHE A 51 N PHE A 40 SHEET 3 B 4 ALA A 76 PRO A 81 -1 O VAL A 80 N THR A 50 SHEET 4 B 4 LYS A 92 VAL A 96 -1 O SER A 95 N LEU A 77 SHEET 1 C 4 SER A 99 HIS A 104 0 SHEET 2 C 4 TRP A 109 SER A 115 -1 O LEU A 110 N CYS A 103 SHEET 3 C 4 TYR A 122 TYR A 127 -1 O HIS A 126 N ALA A 111 SHEET 4 C 4 MET A 130 ARG A 136 -1 O MET A 130 N TYR A 127 SHEET 1 D 4 VAL A 151 MET A 153 0 SHEET 2 D 4 ASN A 156 ASP A 163 -1 O ASN A 156 N MET A 153 SHEET 3 D 4 SER A 171 HIS A 178 -1 O PHE A 175 N TRP A 159 SHEET 4 D 4 MET A 181 VAL A 188 -1 O VAL A 188 N TYR A 172 SHEET 1 E 4 GLU A 196 ASN A 203 0 SHEET 2 E 4 LYS A 206 ARG A 212 -1 O GLU A 208 N TYR A 201 SHEET 3 E 4 PRO A 221 PHE A 225 -1 O PHE A 225 N VAL A 207 SHEET 4 E 4 TYR A 231 TYR A 235 -1 O GLU A 232 N ILE A 224 SHEET 1 F 4 GLY A 274 GLN A 277 0 SHEET 2 F 4 SER A 280 ARG A 285 -1 O SER A 280 N GLN A 277 SHEET 3 F 4 SER A 293 ILE A 300 -1 O LEU A 298 N ALA A 283 SHEET 4 F 4 ILE A 311 TRP A 323 -1 O LEU A 318 N PHE A 295 SHEET 1 G 4 GLY B 15 LYS B 21 0 SHEET 2 G 4 THR B 363 VAL B 373 -1 O VAL B 369 N VAL B 19 SHEET 3 G 4 VAL B 343 GLY B 353 -1 N PHE B 346 O PHE B 370 SHEET 4 G 4 SER B 327 ILE B 332 -1 N PHE B 330 O CYS B 345 SHEET 1 H 4 PHE B 34 CYS B 43 0 SHEET 2 H 4 CYS B 48 LEU B 58 -1 O PHE B 51 N PHE B 40 SHEET 3 H 4 ALA B 76 PRO B 81 -1 O VAL B 80 N THR B 50 SHEET 4 H 4 LYS B 92 VAL B 96 -1 O SER B 95 N LEU B 77 SHEET 1 I 4 SER B 99 HIS B 104 0 SHEET 2 I 4 TRP B 109 SER B 115 -1 O LEU B 110 N CYS B 103 SHEET 3 I 4 TYR B 122 TYR B 127 -1 O HIS B 126 N ALA B 111 SHEET 4 I 4 MET B 130 ARG B 136 -1 O MET B 130 N TYR B 127 SHEET 1 J 4 VAL B 151 MET B 153 0 SHEET 2 J 4 ASN B 156 ASP B 163 -1 O ASN B 156 N MET B 153 SHEET 3 J 4 SER B 171 HIS B 178 -1 O PHE B 175 N TRP B 159 SHEET 4 J 4 MET B 181 VAL B 188 -1 O VAL B 188 N TYR B 172 SHEET 1 K 4 GLU B 196 ASN B 203 0 SHEET 2 K 4 LYS B 206 ARG B 212 -1 O LYS B 206 N ASN B 203 SHEET 3 K 4 PRO B 221 PHE B 225 -1 O PHE B 225 N VAL B 207 SHEET 4 K 4 TYR B 231 TYR B 235 -1 O GLU B 232 N ILE B 224 SHEET 1 L 4 GLY B 274 GLN B 277 0 SHEET 2 L 4 SER B 280 ARG B 285 -1 O SER B 280 N GLN B 277 SHEET 3 L 4 SER B 293 ILE B 300 -1 O ILE B 300 N VAL B 281 SHEET 4 L 4 ILE B 311 TRP B 323 -1 O LEU B 318 N PHE B 295 SSBOND 1 CYS A 11 CYS A 341 1555 1555 2.04 SSBOND 2 CYS A 43 CYS A 48 1555 1555 2.03 SSBOND 3 CYS A 103 CYS A 150 1555 1555 2.04 SSBOND 4 CYS A 152 CYS A 157 1555 1555 2.04 SSBOND 5 CYS A 198 CYS A 211 1555 1555 2.05 SSBOND 6 CYS A 200 CYS A 209 1555 1555 2.04 SSBOND 7 CYS A 237 CYS A 256 1555 1555 2.04 SSBOND 8 CYS A 345 CYS A 371 1555 1555 2.04 SSBOND 9 CYS B 11 CYS B 341 1555 1555 2.04 SSBOND 10 CYS B 43 CYS B 48 1555 1555 2.04 SSBOND 11 CYS B 103 CYS B 150 1555 1555 2.04 SSBOND 12 CYS B 152 CYS B 157 1555 1555 2.04 SSBOND 13 CYS B 198 CYS B 211 1555 1555 2.05 SSBOND 14 CYS B 200 CYS B 209 1555 1555 2.05 SSBOND 15 CYS B 237 CYS B 256 1555 1555 2.04 SSBOND 16 CYS B 345 CYS B 371 1555 1555 2.04 LINK ND2 ASN A 12 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 65 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN B 12 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 65 C1 NAG B 604 1555 1555 1.44 LINK O6 GAL C 1 C2 SIA C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 GAL E 1 C2 SIA E 2 1555 1555 1.43 LINK O ASP A 213 CA CA A 601 1555 1555 2.38 LINK O GLY A 217 CA CA A 601 1555 1555 2.47 LINK OD2 ASP A 243 CA CA A 601 1555 1555 2.40 LINK O TYR A 268 CA CA A 601 1555 1555 2.44 LINK CA CA A 601 O HOH A 701 1555 1555 2.51 LINK CA CA A 601 O HOH A 703 1555 1555 2.50 LINK O ASP B 213 CA CA B 601 1555 1555 2.39 LINK O GLY B 217 CA CA B 601 1555 1555 2.48 LINK OD2 ASP B 243 CA CA B 601 1555 1555 2.44 LINK O TYR B 268 CA CA B 601 1555 1555 2.44 LINK CA CA B 601 O HOH B 703 1555 1555 2.50 LINK CA CA B 601 O HOH B 709 1555 1555 2.49 CISPEP 1 THR A 244 PRO A 245 0 4.03 CISPEP 2 LYS A 354 PRO A 355 0 2.45 CISPEP 3 LEU A 388 PRO A 389 0 2.37 CISPEP 4 THR B 244 PRO B 245 0 4.06 CISPEP 5 LYS B 354 PRO B 355 0 3.60 CISPEP 6 LEU B 388 PRO B 389 0 -0.86 CRYST1 112.251 112.251 66.756 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014980 0.00000