HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-JUN-14 4QNI TITLE CRYSTAL STRUCTURE OF AN AUXILIARY NUTRIENT BINDING PROTEIN (BT3507) TITLE 2 FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-353; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_3507; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO DOMAIN PROTEIN, N-TERMINAL- PF08522 FAMILY (DUF1735), C-TERMINAL KEYWDS 2 - PF14274 FAMILY (DUF4361), STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 4 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4QNI 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4QNI 1 REMARK REVDAT 2 24-DEC-14 4QNI 1 TITLE REVDAT 1 13-AUG-14 4QNI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BT3507) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 864 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2701 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2049 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2552 REMARK 3 BIN R VALUE (WORKING SET) : 0.2008 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.52 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97790 REMARK 3 B22 (A**2) : -0.97790 REMARK 3 B33 (A**2) : 1.95590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.302 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2605 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3538 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1155 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 385 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2605 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 347 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2900 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|29 - 353 } REMARK 3 ORIGIN FOR THE GROUP (A): 44.5254 19.7800 24.4276 REMARK 3 T TENSOR REMARK 3 T11: -0.0548 T22: -0.1870 REMARK 3 T33: -0.1049 T12: -0.0138 REMARK 3 T13: 0.0814 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.8917 L22: 1.0959 REMARK 3 L33: 3.2325 L12: 0.0462 REMARK 3 L13: 0.0870 L23: 1.1012 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.0110 S13: 0.0432 REMARK 3 S21: -0.1004 S22: -0.0532 S23: -0.0899 REMARK 3 S31: -0.0915 S32: -0.0950 S33: 0.0179 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE EXPERIMENTAL (MAD) PHASES WERE USED AS REMARK 3 RESTRAINTS DURING REFINEMENT. 4. CITRATE (CIT) FROM THE REMARK 3 CRYSTALLIZATION, CHLORIDE (CL) FROM THE PURIFICATION AND 1,2- REMARK 3 ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAVE BEEN MODELED IN REMARK 3 THE SOLVENT STRUCTURE. 5. RAMACHANDRAN OUTLIER AT RESIDUE 36 IS REMARK 3 IN A REGION OF SUBOPTIMAL ELECTRON DENSITY THAT IS DIFFICULT TO REMARK 3 MODEL. REMARK 4 REMARK 4 4QNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000086277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932,0.95369,0.97903 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.576 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.40M TRI-SODIUM CITRATE, 0.1M SODIUM REMARK 280 HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 48.46100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.03350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 48.46100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 79.03350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 48.46100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 79.03350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 48.46100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 79.03350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.46100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 79.03350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 48.46100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 79.03350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 48.46100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 79.03350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 48.46100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 48.46100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.03350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 105430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.92200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.92200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 96.92200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 96.92200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.92200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.92200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 96.92200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 96.92200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 96.92200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 96.92200 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 96.92200 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 96.92200 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 564 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 TRP A 24 REMARK 465 GLU A 25 REMARK 465 ASP A 26 REMARK 465 GLU A 27 REMARK 465 GLN A 28 REMARK 465 SER A 79 REMARK 465 THR A 80 REMARK 465 ASP A 81 REMARK 465 ASN A 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 29 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 LEU A 39 CG CD1 CD2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 ASN A 169 CG OD1 ND2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 ILE A 291 CD1 REMARK 470 MSE A 295 SE CE REMARK 470 ASP A 297 CG OD1 OD2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 ASP A 346 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 37 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 30 -35.74 71.09 REMARK 500 SER A 36 77.98 -55.06 REMARK 500 LEU A 39 5.04 -63.94 REMARK 500 ALA A 106 -120.26 48.95 REMARK 500 ASN A 169 43.56 -90.57 REMARK 500 ASN A 189 -169.12 -117.01 REMARK 500 ARG A 250 -58.63 -27.85 REMARK 500 ASN A 260 58.21 -93.31 REMARK 500 THR A 342 6.91 -69.24 REMARK 500 GLU A 347 -50.57 62.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420140 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (22-353) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4QNI A 22 353 UNP Q8A201 Q8A201_BACTN 22 353 SEQADV 4QNI GLY A 0 UNP Q8A201 EXPRESSION TAG SEQRES 1 A 333 GLY SER GLU TRP GLU ASP GLU GLN TYR GLU HIS TYR ILE SEQRES 2 A 333 SER PHE SER SER GLN LEU ASP SER LYS GLY VAL THR ASN SEQRES 3 A 333 ILE TYR VAL PRO TYR SER ARG HIS ASP ALA GLU GLY ASN SEQRES 4 A 333 TYR ALA GLU GLY GLY GLU GLY ARG SER ASN TYR GLN LEU SEQRES 5 A 333 PRO ILE LEU VAL SER GLY SER THR ASP ASN PRO SER ASN SEQRES 6 A 333 VAL THR VAL HIS VAL ALA HIS ASP ALA ASP THR LEU ASN SEQRES 7 A 333 ILE LEU ASN TYR ALA ARG TYR ALA THR ARG THR GLU LEU SEQRES 8 A 333 TYR TYR GLU ASP MSE GLY ALA GLU GLY LEU ALA TYR ALA SEQRES 9 A 333 SER TYR PRO GLU SER LEU GLN ILE LYS ALA GLY GLU ASN SEQRES 10 A 333 LYS GLY LEU LEU ASP LEU LYS PHE ASP PHE ARG ASN ILE SEQRES 11 A 333 ASP MSE SER GLU LYS TRP VAL LEU PRO LEU GLN ILE VAL SEQRES 12 A 333 ASP ASP ALA SER TYR ASN TYR VAL ALA HIS PRO ARG LYS SEQRES 13 A 333 ASP TYR ALA LYS ALA ILE LEU ARG ILE PHE PRO PHE ASN SEQRES 14 A 333 ASP TYR SER GLY ASP TYR SER GLY THR GLY ILE THR ASN SEQRES 15 A 333 LYS VAL VAL THR GLY TYR ASP GLY ASP GLY LYS PRO ILE SEQRES 16 A 333 GLU THR ALA GLU SER ILE THR LYS SER SER ILE ARG GLY SEQRES 17 A 333 TYR VAL ILE ASP GLU GLN THR ILE PHE THR TYR ALA GLY SEQRES 18 A 333 ILE VAL ASP GLU ASP TYR THR ASP ARG ARG LYS TYR LYS SEQRES 19 A 333 ILE LYS PHE ALA PHE ASN GLY GLU THR ASN GLY SER VAL SEQRES 20 A 333 THR ILE SER CYS ASP ASN ALA GLU GLU ILE GLY PHE GLU SEQRES 21 A 333 LEU ASN LYS ASP VAL THR PRO SER PHE ARG ILE SER SER SEQRES 22 A 333 SER MSE ASP ASP ALA LYS PRO TYR LEU GLU HIS ARG TYR SEQRES 23 A 333 VAL ILE ILE ASN ASN VAL ASP TYR TYR PHE ASN TYR ILE SEQRES 24 A 333 PRO VAL GLU GLY THR ILE ILE ARG TYR HIS VAL LYS GLY SEQRES 25 A 333 THR LEU THR LEU SER ARG ASP ILE ASN THR GLN ILE PRO SEQRES 26 A 333 ASP GLU ASP GLN ALA ILE GLU TRP MODRES 4QNI MSE A 116 MET SELENOMETHIONINE MODRES 4QNI MSE A 152 MET SELENOMETHIONINE MODRES 4QNI MSE A 295 MET SELENOMETHIONINE HET MSE A 116 8 HET MSE A 152 8 HET MSE A 295 6 HET CL A 400 1 HET CIT A 401 13 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 CIT C6 H8 O7 FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 HOH *98(H2 O) HELIX 1 1 ASP A 93 ALA A 106 1 14 HELIX 2 2 ARG A 108 LEU A 111 5 4 HELIX 3 3 ASP A 249 LYS A 252 5 4 SHEET 1 A 4 VAL A 44 PRO A 50 0 SHEET 2 A 4 LYS A 180 PHE A 188 1 O ILE A 182 N THR A 45 SHEET 3 A 4 LYS A 155 ILE A 162 -1 N LEU A 160 O ALA A 181 SHEET 4 A 4 TYR A 113 ASP A 115 1 N GLU A 114 O VAL A 157 SHEET 1 B 5 VAL A 44 PRO A 50 0 SHEET 2 B 5 LYS A 180 PHE A 188 1 O ILE A 182 N THR A 45 SHEET 3 B 5 LYS A 155 ILE A 162 -1 N LEU A 160 O ALA A 181 SHEET 4 B 5 VAL A 86 HIS A 92 -1 N ALA A 91 O GLN A 161 SHEET 5 B 5 SER A 129 ILE A 132 -1 O LEU A 130 N VAL A 88 SHEET 1 C 3 ARG A 67 LEU A 75 0 SHEET 2 C 3 LYS A 138 ASP A 146 -1 O LEU A 143 N TYR A 70 SHEET 3 C 3 ALA A 124 SER A 125 -1 N SER A 125 O LYS A 144 SHEET 1 D11 PRO A 214 GLU A 216 0 SHEET 2 D11 ILE A 200 TYR A 208 -1 N GLY A 207 O ILE A 215 SHEET 3 D11 ILE A 326 ASN A 341 -1 O HIS A 329 N LYS A 203 SHEET 4 D11 GLY A 193 SER A 196 -1 N SER A 196 O THR A 335 SHEET 5 D11 SER A 225 ASP A 232 -1 O GLY A 228 N GLY A 193 SHEET 6 D11 THR A 235 TYR A 239 -1 O PHE A 237 N TYR A 229 SHEET 7 D11 LYS A 254 ASN A 260 -1 O ILE A 255 N THR A 238 SHEET 8 D11 ASN A 264 SER A 270 -1 O SER A 270 N LYS A 256 SHEET 9 D11 SER A 288 MSE A 295 -1 O PHE A 289 N GLY A 265 SHEET 10 D11 LEU A 302 TYR A 318 -1 O HIS A 304 N SER A 294 SHEET 11 D11 GLU A 280 LEU A 281 -1 N GLU A 280 O TYR A 315 SHEET 1 E 5 PRO A 214 GLU A 216 0 SHEET 2 E 5 ILE A 200 TYR A 208 -1 N GLY A 207 O ILE A 215 SHEET 3 E 5 ILE A 326 ASN A 341 -1 O HIS A 329 N LYS A 203 SHEET 4 E 5 LEU A 302 TYR A 318 -1 N GLU A 303 O ILE A 340 SHEET 5 E 5 GLU A 280 LEU A 281 -1 N GLU A 280 O TYR A 315 LINK C ASP A 115 N MSE A 116 1555 1555 1.31 LINK C MSE A 116 N GLY A 117 1555 1555 1.34 LINK C ASP A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N SER A 153 1555 1555 1.36 LINK C SER A 294 N MSE A 295 1555 1555 1.33 LINK C MSE A 295 N ASP A 296 1555 1555 1.35 SITE 1 AC1 6 GLY A 261 GLU A 262 THR A 263 ASN A 264 SITE 2 AC1 6 THR A 268 EDO A 406 SITE 1 AC2 3 SER A 225 ARG A 227 HOH A 510 SITE 1 AC3 8 ILE A 226 THR A 238 GLY A 241 PHE A 257 SITE 2 AC3 8 TYR A 314 VAL A 330 HOH A 525 HOH A 572 SITE 1 AC4 4 ASP A 190 ARG A 305 VAL A 307 ARG A 338 SITE 1 AC5 3 ASP A 151 LYS A 254 HOH A 503 SITE 1 AC6 4 ASN A 264 GLY A 265 SER A 266 CIT A 401 SITE 1 AC7 6 TYR A 51 SER A 52 HIS A 54 PHE A 188 SITE 2 AC7 6 GLU A 233 HOH A 502 SITE 1 AC8 4 TYR A 48 GLY A 193 ASP A 194 SER A 337 CRYST1 96.922 96.922 158.067 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006326 0.00000