HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-JUN-14 4QP2 TITLE CRYSTAL STRUCTURE OF ERKS IN COMPLEX WITH 5-CHLOROBENZO[D]OXAZOL-2- TITLE 2 AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2, MAP KINASE 2, MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.YIN,W.WANG REVDAT 2 16-DEC-15 4QP2 1 JRNL REVDAT 1 23-SEP-15 4QP2 0 JRNL AUTH D.J.BURDICK,S.WANG,C.HEISE,B.PAN,J.DRUMMOND,J.YIN,L.GOESER, JRNL AUTH 2 S.MAGNUSON,J.BLANEY,J.MOFFAT,W.WANG,H.CHEN JRNL TITL FRAGMENT-BASED DISCOVERY OF POTENT ERK2 PYRROLOPYRAZINE JRNL TITL 2 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 4728 2015 JRNL REFN ISSN 0960-894X JRNL PMID 26338362 JRNL DOI 10.1016/J.BMCL.2015.08.048 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3691 - 6.9187 0.98 2803 117 0.1862 0.2123 REMARK 3 2 6.9187 - 5.4957 1.00 2864 121 0.1924 0.2402 REMARK 3 3 5.4957 - 4.8022 1.00 2876 128 0.1737 0.2003 REMARK 3 4 4.8022 - 4.3636 1.00 2785 171 0.1479 0.2380 REMARK 3 5 4.3636 - 4.0512 1.00 2846 178 0.1563 0.1782 REMARK 3 6 4.0512 - 3.8125 1.00 2808 168 0.1608 0.2181 REMARK 3 7 3.8125 - 3.6217 1.00 2805 152 0.1718 0.2268 REMARK 3 8 3.6217 - 3.4641 1.00 2820 159 0.1822 0.2369 REMARK 3 9 3.4641 - 3.3308 1.00 2835 150 0.1774 0.2497 REMARK 3 10 3.3308 - 3.2159 1.00 2854 149 0.1903 0.2057 REMARK 3 11 3.2159 - 3.1154 1.00 2840 150 0.1878 0.2409 REMARK 3 12 3.1154 - 3.0264 1.00 2823 146 0.1948 0.2653 REMARK 3 13 3.0264 - 2.9467 1.00 2798 159 0.1874 0.2370 REMARK 3 14 2.9467 - 2.8748 1.00 2837 168 0.1832 0.2313 REMARK 3 15 2.8748 - 2.8095 1.00 2841 142 0.1926 0.2180 REMARK 3 16 2.8095 - 2.7497 1.00 2816 149 0.1873 0.2593 REMARK 3 17 2.7497 - 2.6947 1.00 2848 159 0.1819 0.2711 REMARK 3 18 2.6947 - 2.6439 1.00 2855 98 0.1932 0.2815 REMARK 3 19 2.6439 - 2.5967 1.00 2839 140 0.1880 0.2431 REMARK 3 20 2.5967 - 2.5527 1.00 2856 162 0.1883 0.2432 REMARK 3 21 2.5527 - 2.5115 1.00 2786 165 0.1993 0.2623 REMARK 3 22 2.5115 - 2.4729 1.00 2842 168 0.2105 0.2941 REMARK 3 23 2.4729 - 2.4365 1.00 2754 175 0.2215 0.2657 REMARK 3 24 2.4365 - 2.4022 1.00 2879 178 0.2188 0.2795 REMARK 3 25 2.4022 - 2.3697 1.00 2797 121 0.2274 0.3335 REMARK 3 26 2.3697 - 2.3390 1.00 2847 155 0.2264 0.2915 REMARK 3 27 2.3390 - 2.3097 1.00 2843 151 0.2203 0.2874 REMARK 3 28 2.3097 - 2.2819 1.00 2869 130 0.2299 0.2672 REMARK 3 29 2.2819 - 2.2554 1.00 2825 136 0.2393 0.3045 REMARK 3 30 2.2554 - 2.2300 1.00 2835 127 0.2553 0.2494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5597 REMARK 3 ANGLE : 1.161 7586 REMARK 3 CHIRALITY : 0.081 830 REMARK 3 PLANARITY : 0.005 973 REMARK 3 DIHEDRAL : 14.438 2104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND (RESID 12:108 OR RESID 335:358 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7034 -28.6913 -18.7152 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.4656 REMARK 3 T33: 0.3623 T12: 0.1920 REMARK 3 T13: 0.1431 T23: 0.1721 REMARK 3 L TENSOR REMARK 3 L11: 1.6228 L22: 1.4551 REMARK 3 L33: 0.5653 L12: -1.4589 REMARK 3 L13: 0.1088 L23: 0.3402 REMARK 3 S TENSOR REMARK 3 S11: -0.5853 S12: -0.7402 S13: -0.5941 REMARK 3 S21: 0.4874 S22: 0.4652 S23: 0.4203 REMARK 3 S31: -0.0135 S32: -0.0141 S33: -0.0331 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 109:331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8288 -31.9457 -28.3501 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2093 REMARK 3 T33: 0.2122 T12: -0.0077 REMARK 3 T13: 0.0120 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.9426 L22: 1.3240 REMARK 3 L33: 1.3593 L12: -0.3800 REMARK 3 L13: 0.4213 L23: -0.5651 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: -0.1177 S13: 0.0361 REMARK 3 S21: 0.0052 S22: 0.0623 S23: -0.1100 REMARK 3 S31: -0.0046 S32: 0.1070 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND (RESID 12:108 OR RESID 335:355 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7167 -62.2859 -53.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.4381 T22: 0.6152 REMARK 3 T33: 0.4038 T12: 0.1833 REMARK 3 T13: -0.0835 T23: 0.1297 REMARK 3 L TENSOR REMARK 3 L11: 0.8943 L22: 0.9591 REMARK 3 L33: 0.2442 L12: -0.0613 REMARK 3 L13: -0.0895 L23: 0.1742 REMARK 3 S TENSOR REMARK 3 S11: -0.3475 S12: -0.3400 S13: -0.3477 REMARK 3 S21: 0.3835 S22: 0.0328 S23: -0.2731 REMARK 3 S31: 0.4572 S32: 0.5368 S33: -0.0712 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 109:334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4654 -41.9886 -63.8902 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.2083 REMARK 3 T33: 0.2115 T12: -0.0096 REMARK 3 T13: -0.0179 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6159 L22: 1.4403 REMARK 3 L33: 1.9859 L12: 0.2092 REMARK 3 L13: 0.3708 L23: 0.4095 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: 0.0270 S13: 0.0375 REMARK 3 S21: 0.0096 S22: 0.0140 S23: 0.0574 REMARK 3 S31: -0.2457 S32: -0.1065 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-14. REMARK 100 THE RCSB ID CODE IS RCSB086333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979450 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.2 M PROLINE, AND 0.1 M REMARK 280 HEPES PH7.5, IN A 24-WELL LINBRO PLATES INCUBATED AT 4C, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.77700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.36200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.36200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.38850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.36200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.36200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 208.16550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.36200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.36200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.38850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.36200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.36200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 208.16550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 138.77700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 THR A 181 REMARK 465 GLY A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 THR A 185 REMARK 465 GLU A 186 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 GLY A 204 REMARK 465 ASP A 332 REMARK 465 MET A 333 REMARK 465 GLU A 334 REMARK 465 MET B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 THR B 181 REMARK 465 GLY B 182 REMARK 465 PHE B 183 REMARK 465 ILE B 255 REMARK 465 ILE B 256 REMARK 465 ASN B 257 REMARK 465 LEU B 258 REMARK 465 LYS B 259 REMARK 465 ALA B 260 REMARK 465 ARG B 261 REMARK 465 ASN B 262 REMARK 465 TYR B 263 REMARK 465 LEU B 264 REMARK 465 PHE B 331 REMARK 465 ASP B 332 REMARK 465 MET B 333 REMARK 465 TYR B 358 REMARK 465 ARG B 359 REMARK 465 SER B 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 180 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 262 CG OD1 ND2 REMARK 470 LEU A 265 CG CD1 CD2 REMARK 470 SER A 266 OG REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 HIS B 180 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 523 O HOH A 643 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 19 -66.94 -106.48 REMARK 500 ASP A 20 63.25 67.83 REMARK 500 THR A 26 -168.89 -129.23 REMARK 500 ARG A 148 -15.62 78.73 REMARK 500 ASP A 167 76.22 60.37 REMARK 500 ASP A 175 87.78 -157.15 REMARK 500 ASP A 177 60.96 -102.30 REMARK 500 HIS A 178 105.49 -167.61 REMARK 500 ASP A 179 75.41 55.79 REMARK 500 ASN A 257 -46.10 -163.63 REMARK 500 LEU A 258 109.00 63.26 REMARK 500 LYS A 259 84.67 65.98 REMARK 500 ARG A 261 78.22 61.24 REMARK 500 ASN A 262 -145.61 -84.18 REMARK 500 TYR A 263 102.10 49.88 REMARK 500 LEU A 264 71.74 48.55 REMARK 500 LEU A 265 90.75 -40.38 REMARK 500 SER A 266 -7.46 173.54 REMARK 500 LEU A 294 50.46 -100.30 REMARK 500 ASP A 318 87.16 -162.10 REMARK 500 MET B 13 76.16 45.56 REMARK 500 ARG B 15 98.49 56.67 REMARK 500 GLN B 17 -132.87 -154.94 REMARK 500 VAL B 21 43.81 -99.54 REMARK 500 TYR B 36 85.31 40.49 REMARK 500 ARG B 148 -19.49 76.42 REMARK 500 ASP B 167 82.07 61.61 REMARK 500 ASP B 175 79.16 -158.38 REMARK 500 THR B 185 -164.99 -102.38 REMARK 500 GLU B 186 -17.23 68.72 REMARK 500 TYR B 187 154.51 -41.10 REMARK 500 LEU B 294 46.09 -93.00 REMARK 500 ASP B 318 86.42 -160.83 REMARK 500 LEU B 335 118.15 -167.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 336 ASP A 337 148.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU B 267 20.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 636 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 620 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH B 626 DISTANCE = 5.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 36R A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QP1 RELATED DB: PDB REMARK 900 RELATED ID: 4QP3 RELATED DB: PDB REMARK 900 RELATED ID: 4QP4 RELATED DB: PDB REMARK 900 RELATED ID: 4QP6 RELATED DB: PDB REMARK 900 RELATED ID: 4QP7 RELATED DB: PDB REMARK 900 RELATED ID: 4QP8 RELATED DB: PDB REMARK 900 RELATED ID: 4QP9 RELATED DB: PDB REMARK 900 RELATED ID: 4QPA RELATED DB: PDB DBREF 4QP2 A 1 360 UNP P28482 MK01_HUMAN 1 360 DBREF 4QP2 B 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 4QP2 MET A -8 UNP P28482 EXPRESSION TAG SEQADV 4QP2 GLY A -7 UNP P28482 EXPRESSION TAG SEQADV 4QP2 SER A -6 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS A -5 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS A -4 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS A -3 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS A -2 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS A -1 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS A 0 UNP P28482 EXPRESSION TAG SEQADV 4QP2 MET B -8 UNP P28482 EXPRESSION TAG SEQADV 4QP2 GLY B -7 UNP P28482 EXPRESSION TAG SEQADV 4QP2 SER B -6 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS B -5 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS B -4 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS B -3 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS B -2 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS B -1 UNP P28482 EXPRESSION TAG SEQADV 4QP2 HIS B 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 369 MET GLY SER HIS HIS HIS HIS HIS HIS MET ALA ALA ALA SEQRES 2 A 369 ALA ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 3 A 369 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 4 A 369 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 5 A 369 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 6 A 369 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 7 A 369 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 8 A 369 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 9 A 369 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 10 A 369 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 11 A 369 SER ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 12 A 369 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 13 A 369 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 14 A 369 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 15 A 369 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU SEQRES 16 A 369 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 17 A 369 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 18 A 369 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 19 A 369 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 20 A 369 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 21 A 369 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 22 A 369 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 23 A 369 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 24 A 369 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 25 A 369 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 26 A 369 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 27 A 369 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 28 A 369 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 29 A 369 PRO GLY TYR ARG SER SEQRES 1 B 369 MET GLY SER HIS HIS HIS HIS HIS HIS MET ALA ALA ALA SEQRES 2 B 369 ALA ALA ALA GLY ALA GLY PRO GLU MET VAL ARG GLY GLN SEQRES 3 B 369 VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SER TYR SEQRES 4 B 369 ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER ALA TYR SEQRES 5 B 369 ASP ASN VAL ASN LYS VAL ARG VAL ALA ILE LYS LYS ILE SEQRES 6 B 369 SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG THR LEU SEQRES 7 B 369 ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS GLU ASN SEQRES 8 B 369 ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO THR ILE SEQRES 9 B 369 GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP LEU MET SEQRES 10 B 369 GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN HIS LEU SEQRES 11 B 369 SER ASN ASP NEP ILE CYS TYR PHE LEU TYR GLN ILE LEU SEQRES 12 B 369 ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL LEU HIS SEQRES 13 B 369 ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN THR THR SEQRES 14 B 369 CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA ARG VAL SEQRES 15 B 369 ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU THR GLU SEQRES 16 B 369 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 17 B 369 LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP ILE TRP SEQRES 18 B 369 SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER ASN ARG SEQRES 19 B 369 PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN LEU ASN SEQRES 20 B 369 HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN GLU ASP SEQRES 21 B 369 LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN TYR LEU SEQRES 22 B 369 LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP ASN ARG SEQRES 23 B 369 LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP LEU LEU SEQRES 24 B 369 ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG ILE GLU SEQRES 25 B 369 VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU GLN TYR SEQRES 26 B 369 TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA PRO PHE SEQRES 27 B 369 LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS GLU LYS SEQRES 28 B 369 LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG PHE GLN SEQRES 29 B 369 PRO GLY TYR ARG SER MODRES 4QP2 NEP A 125 HIS N1-PHOSPHONOHISTIDINE MODRES 4QP2 NEP B 125 HIS N1-PHOSPHONOHISTIDINE HET NEP A 125 14 HET NEP B 125 14 HET 36R A 401 11 HET IMD A 402 5 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM 36R 5-CHLORO-1,3-BENZOXAZOL-2-AMINE HETNAM IMD IMIDAZOLE FORMUL 1 NEP 2(C6 H10 N3 O5 P) FORMUL 3 36R C7 H5 CL N2 O FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 HOH *320(H2 O) HELIX 1 1 HIS A 61 PHE A 78 1 18 HELIX 2 2 LEU A 112 GLN A 119 1 8 HELIX 3 3 SER A 122 ALA A 143 1 22 HELIX 4 4 LYS A 151 SER A 153 5 3 HELIX 5 5 THR A 190 ARG A 194 5 5 HELIX 6 6 ALA A 195 ASN A 201 1 7 HELIX 7 7 LYS A 207 ASN A 224 1 18 HELIX 8 8 HIS A 232 GLY A 245 1 14 HELIX 9 9 SER A 248 CYS A 254 1 7 HELIX 10 10 PRO A 274 PHE A 279 1 6 HELIX 11 11 ASP A 283 LEU A 294 1 12 HELIX 12 12 ASN A 297 ARG A 301 5 5 HELIX 13 13 GLU A 303 ALA A 309 1 7 HELIX 14 14 HIS A 310 GLU A 314 5 5 HELIX 15 15 ASP A 318 GLU A 322 5 5 HELIX 16 16 PRO A 339 ALA A 352 1 14 HELIX 17 17 ARG A 353 GLN A 355 5 3 HELIX 18 18 HIS B 61 PHE B 78 1 18 HELIX 19 19 LEU B 112 LYS B 117 1 6 HELIX 20 20 SER B 122 ALA B 143 1 22 HELIX 21 21 LYS B 151 SER B 153 5 3 HELIX 22 22 THR B 190 ARG B 194 5 5 HELIX 23 23 ALA B 195 LEU B 200 1 6 HELIX 24 24 LYS B 207 ASN B 224 1 18 HELIX 25 25 HIS B 232 GLY B 245 1 14 HELIX 26 26 PRO B 274 PHE B 279 1 6 HELIX 27 27 ASP B 283 LEU B 294 1 12 HELIX 28 28 GLU B 303 ALA B 309 1 7 HELIX 29 29 HIS B 310 GLU B 314 5 5 HELIX 30 30 ASP B 318 GLU B 322 5 5 HELIX 31 31 PRO B 339 THR B 351 1 13 SHEET 1 A 2 MET A 13 VAL A 14 0 SHEET 2 A 2 GLN A 17 VAL A 18 -1 O GLN A 17 N VAL A 14 SHEET 1 B 5 TYR A 25 GLU A 33 0 SHEET 2 B 5 MET A 38 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 B 5 VAL A 49 ILE A 56 -1 O VAL A 51 N ALA A 42 SHEET 4 B 5 VAL A 101 ASP A 106 -1 O VAL A 101 N ILE A 56 SHEET 5 B 5 ASP A 88 ILE A 90 -1 N ASP A 88 O VAL A 104 SHEET 1 C 3 THR A 110 ASP A 111 0 SHEET 2 C 3 LEU A 155 THR A 159 -1 O LEU A 157 N THR A 110 SHEET 3 C 3 ASP A 162 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 D 2 VAL A 145 LEU A 146 0 SHEET 2 D 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 SHEET 1 E 5 TYR B 25 GLY B 32 0 SHEET 2 E 5 VAL B 39 ASP B 44 -1 O TYR B 43 N THR B 26 SHEET 3 E 5 VAL B 49 ILE B 56 -1 O VAL B 51 N ALA B 42 SHEET 4 E 5 VAL B 101 ASP B 106 -1 O VAL B 101 N ILE B 56 SHEET 5 E 5 ASP B 88 ILE B 90 -1 N ASP B 88 O VAL B 104 SHEET 1 F 3 THR B 110 ASP B 111 0 SHEET 2 F 3 LEU B 155 THR B 159 -1 O LEU B 157 N THR B 110 SHEET 3 F 3 ASP B 162 ILE B 165 -1 O LYS B 164 N LEU B 156 SHEET 1 G 2 VAL B 145 LEU B 146 0 SHEET 2 G 2 ARG B 172 VAL B 173 -1 O ARG B 172 N LEU B 146 LINK C ASP A 124 N NEP A 125 1555 1555 1.32 LINK C NEP A 125 N ILE A 126 1555 1555 1.34 LINK C ASP B 124 N NEP B 125 1555 1555 1.33 LINK C NEP B 125 N ILE B 126 1555 1555 1.33 CISPEP 1 GLY A 22 PRO A 23 0 -0.26 CISPEP 2 HIS A 178 ASP A 179 0 -4.52 CISPEP 3 ASP A 179 HIS A 180 0 -0.34 CISPEP 4 LYS A 259 ALA A 260 0 5.96 CISPEP 5 ARG A 261 ASN A 262 0 4.10 CISPEP 6 LEU A 264 LEU A 265 0 14.41 CISPEP 7 TYR B 187 VAL B 188 0 -18.88 CISPEP 8 LEU B 265 SER B 266 0 13.48 SITE 1 AC1 6 ILE A 31 ALA A 52 GLN A 105 ASP A 106 SITE 2 AC1 6 MET A 108 IMD A 402 SITE 1 AC2 7 MET A 108 THR A 110 ASP A 111 LYS A 114 SITE 2 AC2 7 LEU A 156 36R A 401 HOH A 675 CRYST1 82.724 82.724 277.554 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003603 0.00000