HEADER PROTEIN BINDING 27-JUN-14 4QQH TITLE CRYSTAL STRUCTURE OF C1QL3 IN SPACE GROUP H32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C1Q-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C1Q AND TUMOR NECROSIS FACTOR-RELATED PROTEIN 13, C1Q/TNF- COMPND 5 RELATED PROTEIN 13, CTRP13, GLIACOLIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: C1QL3, C1QL, CTRP13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS JELLY ROLL FOLD, C1Q, BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR G-PROTEIN KEYWDS 2 COUPLED RECEPTOR 3, EXTRACELLULAR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.RESSL,A.T.BRUNGER REVDAT 4 28-FEB-24 4QQH 1 REMARK LINK REVDAT 3 22-NOV-17 4QQH 1 REMARK REVDAT 2 06-MAY-15 4QQH 1 JRNL REVDAT 1 15-APR-15 4QQH 0 JRNL AUTH S.RESSL,B.K.VU,S.VIVONA,D.C.MARTINELLI,T.C.SUDHOF, JRNL AUTH 2 A.T.BRUNGER JRNL TITL STRUCTURES OF C1Q-LIKE PROTEINS REVEAL UNIQUE FEATURES AMONG JRNL TITL 2 THE C1Q/TNF SUPERFAMILY. JRNL REF STRUCTURE V. 23 688 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25752542 JRNL DOI 10.1016/J.STR.2015.01.019 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 41168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9325 - 2.9588 0.98 2912 132 0.1663 0.1802 REMARK 3 2 2.9588 - 2.3487 1.00 2836 145 0.1596 0.1938 REMARK 3 3 2.3487 - 2.0518 1.00 2799 159 0.1428 0.1579 REMARK 3 4 2.0518 - 1.8643 1.00 2789 160 0.1389 0.1509 REMARK 3 5 1.8643 - 1.7307 1.00 2788 138 0.1429 0.1469 REMARK 3 6 1.7307 - 1.6286 1.00 2748 161 0.1391 0.1438 REMARK 3 7 1.6286 - 1.5471 1.00 2763 165 0.1459 0.1575 REMARK 3 8 1.5471 - 1.4797 1.00 2787 129 0.1471 0.1476 REMARK 3 9 1.4797 - 1.4228 1.00 2820 114 0.1532 0.1504 REMARK 3 10 1.4228 - 1.3737 1.00 2729 168 0.1579 0.1660 REMARK 3 11 1.3737 - 1.3307 0.97 2711 122 0.1560 0.1756 REMARK 3 12 1.3307 - 1.2927 0.91 2484 137 0.1622 0.1736 REMARK 3 13 1.2927 - 1.2586 0.84 2357 115 0.1597 0.1677 REMARK 3 14 1.2586 - 1.2279 0.72 1990 110 0.1655 0.2081 REMARK 3 15 1.2279 - 1.2000 0.58 1588 112 0.1787 0.1944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1066 REMARK 3 ANGLE : 1.136 1448 REMARK 3 CHIRALITY : 0.047 150 REMARK 3 PLANARITY : 0.005 190 REMARK 3 DIHEDRAL : 12.991 381 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:12) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4777 9.9555 17.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.1098 REMARK 3 T33: 0.0853 T12: -0.0111 REMARK 3 T13: 0.0156 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 4.0346 L22: 3.0071 REMARK 3 L33: 2.8529 L12: -0.7969 REMARK 3 L13: 0.8639 L23: -0.0833 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.3952 S13: 0.0429 REMARK 3 S21: -0.2828 S22: 0.0814 S23: -0.0136 REMARK 3 S31: -0.2381 S32: 0.0315 S33: -0.0955 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 13:21) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7008 17.9939 35.7323 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1168 REMARK 3 T33: 0.1514 T12: -0.0171 REMARK 3 T13: 0.0014 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.9030 L22: 2.3443 REMARK 3 L33: 7.2251 L12: -1.9705 REMARK 3 L13: -3.3162 L23: 3.8572 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: -0.2273 S13: 0.3334 REMARK 3 S21: -0.0964 S22: 0.2840 S23: -0.3264 REMARK 3 S31: -0.3903 S32: 0.5759 S33: -0.3779 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 22:31) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9335 17.7063 30.5274 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.0902 REMARK 3 T33: 0.1389 T12: -0.0127 REMARK 3 T13: 0.0034 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 7.0694 L22: 2.2330 REMARK 3 L33: 4.6558 L12: -2.9904 REMARK 3 L13: -5.1963 L23: 2.5895 REMARK 3 S TENSOR REMARK 3 S11: 0.1631 S12: -0.2595 S13: 0.3146 REMARK 3 S21: -0.1349 S22: 0.0908 S23: -0.2006 REMARK 3 S31: -0.3541 S32: 0.2862 S33: -0.3185 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 32:49) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2252 17.3915 18.4369 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1035 REMARK 3 T33: 0.1266 T12: -0.0072 REMARK 3 T13: 0.0174 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 3.6398 L22: 1.2004 REMARK 3 L33: 1.4451 L12: -0.6623 REMARK 3 L13: 0.9512 L23: -1.0384 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.2824 S13: 0.2932 REMARK 3 S21: -0.0454 S22: -0.0693 S23: -0.0902 REMARK 3 S31: -0.1212 S32: 0.0664 S33: 0.0220 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 50:74) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3444 9.8776 33.6484 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0635 REMARK 3 T33: 0.0914 T12: 0.0016 REMARK 3 T13: -0.0011 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8102 L22: 0.9336 REMARK 3 L33: 2.6165 L12: -0.0821 REMARK 3 L13: 0.3651 L23: -0.1617 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0508 S13: 0.0541 REMARK 3 S21: 0.0757 S22: 0.0029 S23: -0.0128 REMARK 3 S31: -0.1272 S32: -0.0213 S33: 0.0106 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 75:94) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7983 8.5047 37.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.0666 REMARK 3 T33: 0.0803 T12: 0.0055 REMARK 3 T13: 0.0100 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.9080 L22: 1.6717 REMARK 3 L33: 1.6364 L12: -0.4297 REMARK 3 L13: 0.1038 L23: -0.9846 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0958 S13: -0.0103 REMARK 3 S21: 0.0807 S22: 0.0493 S23: 0.0762 REMARK 3 S31: -0.0542 S32: -0.0815 S33: -0.0539 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 95:107) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2152 9.3038 21.3967 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0941 REMARK 3 T33: 0.0976 T12: 0.0075 REMARK 3 T13: -0.0088 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6881 L22: 1.1467 REMARK 3 L33: 0.7047 L12: 0.3939 REMARK 3 L13: -0.3423 L23: 0.0774 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.1067 S13: 0.1014 REMARK 3 S21: -0.1308 S22: 0.0133 S23: 0.1165 REMARK 3 S31: 0.0288 S32: -0.0636 S33: -0.0531 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 108:117) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1169 16.1054 32.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.0743 REMARK 3 T33: 0.1232 T12: 0.0196 REMARK 3 T13: -0.0182 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.3007 L22: 0.1551 REMARK 3 L33: 1.9369 L12: -0.4230 REMARK 3 L13: 1.5730 L23: -0.5083 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.1032 S13: 0.1797 REMARK 3 S21: 0.1016 S22: -0.0152 S23: -0.0002 REMARK 3 S31: -0.4521 S32: -0.2594 S33: 0.2068 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 118:132) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3440 10.2904 31.0505 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0754 REMARK 3 T33: 0.1258 T12: -0.0169 REMARK 3 T13: -0.0110 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.6918 L22: 1.1749 REMARK 3 L33: 2.8154 L12: -0.9831 REMARK 3 L13: -0.7337 L23: -0.7332 REMARK 3 S TENSOR REMARK 3 S11: -0.1018 S12: -0.0957 S13: 0.3279 REMARK 3 S21: 0.1120 S22: -0.0422 S23: -0.2303 REMARK 3 S31: -0.2262 S32: 0.3295 S33: 0.0847 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 133:137) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2303 5.1158 10.6978 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.1686 REMARK 3 T33: 0.0878 T12: 0.0056 REMARK 3 T13: -0.0005 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 5.2212 L22: 3.5314 REMARK 3 L33: 1.9718 L12: 0.9561 REMARK 3 L13: -0.0624 L23: 1.4030 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.3851 S13: -0.1715 REMARK 3 S21: -0.2296 S22: -0.0690 S23: 0.0806 REMARK 3 S31: 0.1392 S32: -0.2475 S33: 0.0902 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400, 0.1 NA-ACETATE, 0.01M REMARK 280 CDCL2, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 38.11500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.00571 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.80233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 38.11500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 22.00571 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.80233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 38.11500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 22.00571 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.80233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 38.11500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 22.00571 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.80233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 38.11500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 22.00571 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 41.80233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 38.11500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 22.00571 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.80233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.01141 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.60467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 44.01141 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 83.60467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 44.01141 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 83.60467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 44.01141 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.60467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 44.01141 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 83.60467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 44.01141 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 83.60467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD CD A 203 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 204 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 205 LIES ON A SPECIAL POSITION. REMARK 375 CD CD A 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 360 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 TYR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 123 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 443 O HOH A 447 1.93 REMARK 500 OE2 GLU A 104 O HOH A 442 1.97 REMARK 500 O HOH A 309 O HOH A 406 1.97 REMARK 500 O HOH A 443 O HOH A 454 2.00 REMARK 500 N LYS A 8 O HOH A 417 2.05 REMARK 500 O HOH A 447 O HOH A 464 2.06 REMARK 500 O HOH A 432 O HOH A 445 2.12 REMARK 500 NH2 ARG A 62 O HOH A 322 2.12 REMARK 500 O HOH A 434 O HOH A 453 2.14 REMARK 500 O HOH A 423 O HOH A 458 2.15 REMARK 500 O HOH A 362 O HOH A 365 2.16 REMARK 500 O HOH A 345 O HOH A 362 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 418 O HOH A 419 2555 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 66.41 -159.21 REMARK 500 ASP A 65 84.26 -163.63 REMARK 500 ASN A 76 -109.36 56.33 REMARK 500 ASN A 122 -93.24 -75.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 ND1 REMARK 620 2 GLU A 23 OE2 81.2 REMARK 620 3 HOH A 306 O 75.3 155.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD2 REMARK 620 2 HOH A 359 O 78.7 REMARK 620 3 HOH A 374 O 101.8 88.1 REMARK 620 4 HOH A 383 O 93.3 170.0 99.5 REMARK 620 5 HOH A 403 O 163.4 98.2 94.3 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD2 REMARK 620 2 HOH A 380 O 83.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD2 REMARK 620 2 HOH A 405 O 96.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 HOH A 399 O 88.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 HOH A 371 O 86.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD2 REMARK 620 2 HOH A 321 O 78.9 REMARK 620 3 HOH A 324 O 161.4 82.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QPY RELATED DB: PDB REMARK 900 RELATED ID: 4QQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4QQL RELATED DB: PDB REMARK 900 RELATED ID: 4QQO RELATED DB: PDB REMARK 900 RELATED ID: 4QQP RELATED DB: PDB DBREF 4QQH A 1 137 UNP Q9ESN4 C1QL3_MOUSE 119 255 SEQRES 1 A 137 ALA THR TYR SER THR VAL PRO LYS ILE ALA PHE TYR ALA SEQRES 2 A 137 GLY LEU LYS ARG GLN HIS GLU GLY TYR GLU VAL LEU LYS SEQRES 3 A 137 PHE ASP ASP VAL VAL THR ASN LEU GLY ASN HIS TYR ASP SEQRES 4 A 137 PRO THR THR GLY LYS PHE THR CYS SER ILE PRO GLY ILE SEQRES 5 A 137 TYR PHE PHE THR TYR HIS VAL LEU MET ARG GLY GLY ASP SEQRES 6 A 137 GLY THR SER MET TRP ALA ASP LEU CYS LYS ASN ASN GLN SEQRES 7 A 137 VAL ARG ALA SER ALA ILE ALA GLN ASP ALA ASP GLN ASN SEQRES 8 A 137 TYR ASP TYR ALA SER ASN SER VAL VAL LEU HIS LEU GLU SEQRES 9 A 137 PRO GLY ASP GLU VAL TYR ILE LYS LEU ASP GLY GLY LYS SEQRES 10 A 137 ALA HIS GLY GLY ASN ASN ASN LYS TYR SER THR PHE SER SEQRES 11 A 137 GLY PHE ILE ILE TYR ALA ASP HET CD A 201 1 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HETNAM CD CADMIUM ION FORMUL 2 CD 7(CD 2+) FORMUL 9 HOH *167(H2 O) HELIX 1 1 GLY A 35 HIS A 37 5 3 SHEET 1 A 5 ASP A 29 LEU A 34 0 SHEET 2 A 5 ALA A 10 GLY A 14 -1 N GLY A 14 O ASP A 29 SHEET 3 A 5 THR A 128 ALA A 136 -1 O GLY A 131 N PHE A 11 SHEET 4 A 5 GLY A 51 LEU A 60 -1 N ILE A 52 O ILE A 134 SHEET 5 A 5 TYR A 94 LEU A 103 -1 O LEU A 101 N TYR A 53 SHEET 1 B 3 HIS A 19 VAL A 24 0 SHEET 2 B 3 GLU A 108 ALA A 118 -1 O ALA A 118 N HIS A 19 SHEET 3 B 3 PHE A 45 THR A 46 -1 N PHE A 45 O VAL A 109 SHEET 1 C 4 HIS A 19 VAL A 24 0 SHEET 2 C 4 GLU A 108 ALA A 118 -1 O ALA A 118 N HIS A 19 SHEET 3 C 4 SER A 68 LYS A 75 -1 N ASP A 72 O LYS A 112 SHEET 4 C 4 GLN A 78 GLN A 86 -1 O ARG A 80 N LEU A 73 LINK ND1 HIS A 19 CD CD A 202 1555 1555 2.33 LINK OE2 GLU A 23 CD CD A 202 1555 1555 2.47 LINK OD2 ASP A 65 CD CD A 201 1555 1555 2.56 LINK OD2 ASP A 87 CD CD A 205 1555 1555 2.35 LINK OD2 ASP A 89 CD CD A 206 1555 1555 2.37 LINK OD1 ASP A 93 CD CD A 203 1555 1555 2.35 LINK OD2 ASP A 93 CD CD A 204 1555 1555 2.32 LINK OD2 ASP A 114 CD CD A 207 1555 1555 2.61 LINK CD CD A 201 O HOH A 359 1555 1555 2.46 LINK CD CD A 201 O HOH A 374 1555 1555 2.59 LINK CD CD A 201 O HOH A 383 1555 1555 2.27 LINK CD CD A 201 O HOH A 403 1555 1555 2.56 LINK CD CD A 202 O HOH A 306 1555 1555 2.56 LINK CD CD A 203 O HOH A 399 1555 1555 2.19 LINK CD CD A 204 O HOH A 371 1555 1555 2.19 LINK CD CD A 205 O HOH A 380 1555 1555 2.24 LINK CD CD A 206 O HOH A 405 1555 1555 2.24 LINK CD CD A 207 O HOH A 321 1555 1555 2.63 LINK CD CD A 207 O HOH A 324 1555 1555 2.48 SITE 1 AC1 5 ASP A 65 HOH A 359 HOH A 374 HOH A 383 SITE 2 AC1 5 HOH A 403 SITE 1 AC2 5 HIS A 19 GLU A 20 GLU A 23 HOH A 306 SITE 2 AC2 5 HOH A 359 SITE 1 AC3 2 ASP A 93 HOH A 399 SITE 1 AC4 2 ASP A 93 HOH A 371 SITE 1 AC5 2 ASP A 87 HOH A 380 SITE 1 AC6 2 ASP A 89 HOH A 405 SITE 1 AC7 4 ASP A 72 ASP A 114 HOH A 321 HOH A 324 CRYST1 76.230 76.230 125.407 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013118 0.007574 0.000000 0.00000 SCALE2 0.000000 0.015148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007974 0.00000