HEADER HYDROLASE 03-JUL-14 4QS6 TITLE CRYSTAL STRUCTURE OF 5-CARBOXYVANILLATE DECARBOXYLASE LIGW2 FROM TITLE 2 NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 (TARGET EFI-505250) WITH TITLE 3 BOUND 4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID, NO METAL, THE D314N TITLE 4 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGW2 DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM 12444 / F199; SOURCE 5 GENE: SARO_0799; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HYDROLASE, AMIDOHYDROLASE, METAL BINDING SITE, DECARBOXYLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,A.VLADIMIROVA,R.TORO,R.BHOSLE,J.A.GERLT,F.M.RAUSHEL, AUTHOR 2 S.C.ALMO REVDAT 2 20-SEP-23 4QS6 1 REMARK SEQADV REVDAT 1 06-AUG-14 4QS6 0 JRNL AUTH Y.PATSKOVSKY,A.VLADIMIROVA,R.TORO,R.BHOSLE,F.M.RAUSHEL, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF LIGW2 DECARBOXYLASE FROM JRNL TITL 2 NOVOSPHINGOBIUM AROMATICIVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 70717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 755 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.74000 REMARK 3 B22 (A**2) : -2.03000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5813 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5511 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7870 ; 1.422 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12677 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 5.977 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;34.511 ;23.546 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1014 ;13.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;16.971 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6601 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1356 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2815 ; 4.228 ; 3.989 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2814 ; 4.228 ; 3.988 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3522 ; 4.842 ; 6.249 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3523 ; 4.842 ; 6.250 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2998 ;13.882 ; 5.103 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2994 ;13.884 ; 5.099 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4334 ;12.630 ; 7.458 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7498 ;12.565 ;16.266 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7494 ;12.557 ;16.258 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : 0.17300 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : 0.95000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QS5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085M SODIUM CITRATE, PH 5.6, 0.17M REMARK 280 SODIUM ACETATE, 25% PEG 4000,15% GLYCEROL, 50MM 3-METHOXY-4- REMARK 280 HYDROXY-5-NITROBENZOIC ACID, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.80800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.69800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.80800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.69800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 159 -129.88 46.21 REMARK 500 PHE A 210 -56.82 -161.10 REMARK 500 ALA A 245 -6.15 67.42 REMARK 500 GLN A 342 -64.93 -134.00 REMARK 500 SER B 159 -130.76 48.16 REMARK 500 PHE B 210 -55.94 -161.49 REMARK 500 ALA B 245 -6.86 73.13 REMARK 500 GLN B 342 -66.62 -134.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DF A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1DF B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QRN RELATED DB: PDB REMARK 900 RELATED ID: 4QS5 RELATED DB: PDB DBREF 4QS6 A 1 351 UNP Q2GA79 Q2GA79_NOVAD 1 351 DBREF 4QS6 B 1 351 UNP Q2GA79 Q2GA79_NOVAD 1 351 SEQADV 4QS6 MET A -21 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS A -20 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS A -19 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS A -18 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS A -17 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS A -16 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS A -15 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 SER A -14 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 SER A -13 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLY A -12 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 VAL A -11 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 ASP A -10 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 LEU A -9 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLY A -8 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 THR A -7 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLU A -6 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 ASN A -5 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 LEU A -4 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 TYR A -3 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 PHE A -2 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLN A -1 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 SER A 0 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 ASN A 314 UNP Q2GA79 ASP 314 ENGINEERED MUTATION SEQADV 4QS6 MET B -21 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS B -20 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS B -19 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS B -18 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS B -17 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS B -16 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 HIS B -15 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 SER B -14 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 SER B -13 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLY B -12 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 VAL B -11 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 ASP B -10 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 LEU B -9 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLY B -8 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 THR B -7 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLU B -6 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 ASN B -5 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 LEU B -4 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 TYR B -3 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 PHE B -2 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 GLN B -1 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 SER B 0 UNP Q2GA79 EXPRESSION TAG SEQADV 4QS6 ASN B 314 UNP Q2GA79 ASP 314 ENGINEERED MUTATION SEQRES 1 A 373 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 373 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR GLN ASP SEQRES 3 A 373 LEU LYS THR GLY GLY GLU GLN GLY TYR LEU ARG ILE ALA SEQRES 4 A 373 THR GLU GLU ALA PHE ALA THR ARG GLU ILE ILE ASP VAL SEQRES 5 A 373 TYR LEU ARG MET ILE ARG ASP GLY THR ALA ASP LYS GLY SEQRES 6 A 373 MET VAL SER LEU TRP GLY PHE TYR ALA GLN SER PRO SER SEQRES 7 A 373 GLU ARG ALA THR GLN ILE LEU GLU ARG LEU LEU ASP LEU SEQRES 8 A 373 GLY GLU ARG ARG ILE ALA ASP MET ASP ALA THR GLY ILE SEQRES 9 A 373 ASP LYS ALA ILE LEU ALA LEU THR SER PRO GLY VAL GLN SEQRES 10 A 373 PRO LEU HIS ASP LEU ASP GLU ALA ARG THR LEU ALA THR SEQRES 11 A 373 ARG ALA ASN ASP THR LEU ALA ASP ALA CYS GLN LYS TYR SEQRES 12 A 373 PRO ASP ARG PHE ILE GLY MET GLY THR VAL ALA PRO GLN SEQRES 13 A 373 ASP PRO GLU TRP SER ALA ARG GLU ILE HIS ARG GLY ALA SEQRES 14 A 373 ARG GLU LEU GLY PHE LYS GLY ILE GLN ILE ASN SER HIS SEQRES 15 A 373 THR GLN GLY ARG TYR LEU ASP GLU GLU PHE PHE ASP PRO SEQRES 16 A 373 ILE PHE ARG ALA LEU VAL GLU VAL ASP GLN PRO LEU TYR SEQRES 17 A 373 ILE HIS PRO ALA THR SER PRO ASP SER MET ILE ASP PRO SEQRES 18 A 373 MET LEU GLU ALA GLY LEU ASP GLY ALA ILE PHE GLY PHE SEQRES 19 A 373 GLY VAL GLU THR GLY MET HIS LEU LEU ARG LEU ILE THR SEQRES 20 A 373 ILE GLY ILE PHE ASP LYS TYR PRO SER LEU GLN ILE MET SEQRES 21 A 373 VAL GLY HIS MET GLY GLU ALA LEU PRO TYR TRP LEU TYR SEQRES 22 A 373 ARG LEU ASP TYR MET HIS GLN ALA GLY VAL ARG SER GLN SEQRES 23 A 373 ARG TYR GLU ARG MET LYS PRO LEU LYS LYS THR ILE GLU SEQRES 24 A 373 GLY TYR LEU LYS SER ASN VAL LEU VAL THR ASN SER GLY SEQRES 25 A 373 VAL ALA TRP GLU PRO ALA ILE LYS PHE CYS GLN GLN VAL SEQRES 26 A 373 MET GLY GLU ASP ARG VAL MET TYR ALA MET ASN TYR PRO SEQRES 27 A 373 TYR GLN TYR VAL ALA ASP GLU VAL ARG ALA MET ASP ALA SEQRES 28 A 373 MET ASP MET SER ALA GLN THR LYS LYS LYS PHE PHE GLN SEQRES 29 A 373 THR ASN ALA GLU LYS TRP PHE LYS LEU SEQRES 1 B 373 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 373 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR GLN ASP SEQRES 3 B 373 LEU LYS THR GLY GLY GLU GLN GLY TYR LEU ARG ILE ALA SEQRES 4 B 373 THR GLU GLU ALA PHE ALA THR ARG GLU ILE ILE ASP VAL SEQRES 5 B 373 TYR LEU ARG MET ILE ARG ASP GLY THR ALA ASP LYS GLY SEQRES 6 B 373 MET VAL SER LEU TRP GLY PHE TYR ALA GLN SER PRO SER SEQRES 7 B 373 GLU ARG ALA THR GLN ILE LEU GLU ARG LEU LEU ASP LEU SEQRES 8 B 373 GLY GLU ARG ARG ILE ALA ASP MET ASP ALA THR GLY ILE SEQRES 9 B 373 ASP LYS ALA ILE LEU ALA LEU THR SER PRO GLY VAL GLN SEQRES 10 B 373 PRO LEU HIS ASP LEU ASP GLU ALA ARG THR LEU ALA THR SEQRES 11 B 373 ARG ALA ASN ASP THR LEU ALA ASP ALA CYS GLN LYS TYR SEQRES 12 B 373 PRO ASP ARG PHE ILE GLY MET GLY THR VAL ALA PRO GLN SEQRES 13 B 373 ASP PRO GLU TRP SER ALA ARG GLU ILE HIS ARG GLY ALA SEQRES 14 B 373 ARG GLU LEU GLY PHE LYS GLY ILE GLN ILE ASN SER HIS SEQRES 15 B 373 THR GLN GLY ARG TYR LEU ASP GLU GLU PHE PHE ASP PRO SEQRES 16 B 373 ILE PHE ARG ALA LEU VAL GLU VAL ASP GLN PRO LEU TYR SEQRES 17 B 373 ILE HIS PRO ALA THR SER PRO ASP SER MET ILE ASP PRO SEQRES 18 B 373 MET LEU GLU ALA GLY LEU ASP GLY ALA ILE PHE GLY PHE SEQRES 19 B 373 GLY VAL GLU THR GLY MET HIS LEU LEU ARG LEU ILE THR SEQRES 20 B 373 ILE GLY ILE PHE ASP LYS TYR PRO SER LEU GLN ILE MET SEQRES 21 B 373 VAL GLY HIS MET GLY GLU ALA LEU PRO TYR TRP LEU TYR SEQRES 22 B 373 ARG LEU ASP TYR MET HIS GLN ALA GLY VAL ARG SER GLN SEQRES 23 B 373 ARG TYR GLU ARG MET LYS PRO LEU LYS LYS THR ILE GLU SEQRES 24 B 373 GLY TYR LEU LYS SER ASN VAL LEU VAL THR ASN SER GLY SEQRES 25 B 373 VAL ALA TRP GLU PRO ALA ILE LYS PHE CYS GLN GLN VAL SEQRES 26 B 373 MET GLY GLU ASP ARG VAL MET TYR ALA MET ASN TYR PRO SEQRES 27 B 373 TYR GLN TYR VAL ALA ASP GLU VAL ARG ALA MET ASP ALA SEQRES 28 B 373 MET ASP MET SER ALA GLN THR LYS LYS LYS PHE PHE GLN SEQRES 29 B 373 THR ASN ALA GLU LYS TRP PHE LYS LEU HET GOL A 401 6 HET CL A 402 1 HET CL A 403 1 HET 1DF A 404 15 HET GOL B 401 6 HET GOL B 402 6 HET 1DF B 403 15 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM 1DF 4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 CL 2(CL 1-) FORMUL 6 1DF 2(C8 H7 N O6) FORMUL 10 HOH *755(H2 O) HELIX 1 1 THR A 24 ASP A 37 1 14 HELIX 2 2 ASP A 41 ALA A 52 1 12 HELIX 3 3 SER A 56 ASP A 68 1 13 HELIX 4 4 GLY A 70 THR A 80 1 11 HELIX 5 5 ASP A 99 TYR A 121 1 23 HELIX 6 6 ASP A 135 GLU A 149 1 15 HELIX 7 7 GLU A 168 PHE A 170 5 3 HELIX 8 8 PHE A 171 ASP A 182 1 12 HELIX 9 9 ILE A 197 GLU A 202 1 6 HELIX 10 10 PHE A 210 ILE A 226 1 17 HELIX 11 11 GLY A 227 TYR A 232 1 6 HELIX 12 12 GLY A 240 ALA A 245 1 6 HELIX 13 13 ALA A 245 SER A 263 1 19 HELIX 14 14 THR A 275 ASN A 283 1 9 HELIX 15 15 TRP A 293 GLY A 305 1 13 HELIX 16 16 VAL A 320 ALA A 329 1 10 HELIX 17 17 SER A 333 GLN A 342 1 10 HELIX 18 18 GLN A 342 PHE A 349 1 8 HELIX 19 19 THR B 24 ASP B 37 1 14 HELIX 20 20 ASP B 41 ALA B 52 1 12 HELIX 21 21 SER B 56 ASP B 68 1 13 HELIX 22 22 GLY B 70 THR B 80 1 11 HELIX 23 23 ASP B 99 TYR B 121 1 23 HELIX 24 24 ASP B 135 GLU B 149 1 15 HELIX 25 25 GLU B 168 PHE B 170 5 3 HELIX 26 26 PHE B 171 ASP B 182 1 12 HELIX 27 27 PRO B 193 ALA B 203 1 11 HELIX 28 28 PHE B 210 ILE B 226 1 17 HELIX 29 29 GLY B 227 TYR B 232 1 6 HELIX 30 30 GLY B 240 ALA B 245 1 6 HELIX 31 31 TRP B 249 SER B 263 1 15 HELIX 32 32 THR B 275 ASN B 283 1 9 HELIX 33 33 TRP B 293 GLY B 305 1 13 HELIX 34 34 VAL B 320 ALA B 329 1 10 HELIX 35 35 SER B 333 GLN B 342 1 10 HELIX 36 36 GLN B 342 PHE B 349 1 8 SHEET 1 A 3 ILE A 16 PHE A 22 0 SHEET 2 A 3 LYS A 84 LEU A 89 1 O LYS A 84 N ALA A 17 SHEET 3 A 3 PHE A 125 GLY A 127 1 O ILE A 126 N LEU A 87 SHEET 1 B 5 ILE A 155 ILE A 157 0 SHEET 2 B 5 LEU A 185 ILE A 187 1 O TYR A 186 N ILE A 155 SHEET 3 B 5 ILE A 237 VAL A 239 1 O MET A 238 N LEU A 185 SHEET 4 B 5 VAL A 284 THR A 287 1 O LEU A 285 N ILE A 237 SHEET 5 B 5 VAL A 309 MET A 310 1 O MET A 310 N VAL A 286 SHEET 1 C 3 ILE B 16 PHE B 22 0 SHEET 2 C 3 LYS B 84 LEU B 89 1 O LYS B 84 N ALA B 17 SHEET 3 C 3 PHE B 125 GLY B 127 1 O ILE B 126 N LEU B 87 SHEET 1 D 5 ILE B 155 ILE B 157 0 SHEET 2 D 5 LEU B 185 ILE B 187 1 O TYR B 186 N ILE B 155 SHEET 3 D 5 ILE B 237 VAL B 239 1 O MET B 238 N LEU B 185 SHEET 4 D 5 VAL B 284 THR B 287 1 O LEU B 285 N ILE B 237 SHEET 5 D 5 VAL B 309 MET B 310 1 O MET B 310 N VAL B 286 CISPEP 1 SER A 91 PRO A 92 0 9.01 CISPEP 2 TYR A 315 PRO A 316 0 2.70 CISPEP 3 SER B 91 PRO B 92 0 7.82 CISPEP 4 TYR B 315 PRO B 316 0 3.36 SITE 1 AC1 9 TYR A 255 GLN A 258 ALA A 259 ARG A 262 SITE 2 AC1 9 HOH A 577 HOH A 677 HOH A 751 ARG B 58 SITE 3 AC1 9 ASP B 331 SITE 1 AC2 3 ARG A 262 SER B 333 ALA B 334 SITE 1 AC3 3 ASP A 41 PRO A 193 ASP A 194 SITE 1 AC4 16 GLU A 19 TYR A 51 ARG A 58 THR A 90 SITE 2 AC4 16 SER A 91 HIS A 188 PHE A 212 HIS A 241 SITE 3 AC4 16 ASN A 314 TYR A 317 HOH A 502 HOH A 509 SITE 4 AC4 16 HOH A 657 HOH A 876 ARG B 252 MET B 256 SITE 1 AC5 5 ASP B 41 GLN B 162 PRO B 193 ASP B 194 SITE 2 AC5 5 HOH B 757 SITE 1 AC6 6 ASP B 307 LYS B 339 THR B 343 ASN B 344 SITE 2 AC6 6 LYS B 347 HOH B 643 SITE 1 AC7 16 ARG A 252 MET A 256 GLU B 19 TYR B 51 SITE 2 AC7 16 THR B 90 SER B 91 HIS B 188 HIS B 241 SITE 3 AC7 16 ASN B 314 TYR B 317 HOH B 501 HOH B 502 SITE 4 AC7 16 HOH B 608 HOH B 617 HOH B 671 HOH B 861 CRYST1 60.422 85.396 141.616 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007061 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.318579 -0.939565 -0.125402 21.51023 1 MTRIX2 2 -0.939149 -0.330795 0.092589 31.05660 1 MTRIX3 2 -0.128475 0.088274 -0.987776 -6.16419 1