HEADER TRANSFERASE 09-JUL-14 4QTU TITLE STRUCTURE OF S. CEREVISIAE BUD23-TRM112 COMPLEX INVOLVED IN FORMATION TITLE 2 OF M7G1575 ON 18S RRNA (SAM BOUND FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIFUNCTIONAL METHYLTRANSFERASE SUBUNIT TRM112; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: RRNA MTASE ACTIVATOR SUBUNIT, ERF1 METHYLTRANSFERASE SUBUNIT COMPND 5 TRM112, ERF1 MTASE SUBUNIT TRM112, TRNA METHYLTRANSFERASE 112; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PUTATIVE METHYLTRANSFERASE BUD23; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: FRAGMENT RESIDUES 1-202; COMPND 11 SYNONYM: RRNA MTASE CATALYTIC SUBUNIT, BUD SITE SELECTION PROTEIN 23; COMPND 12 EC: 2.1.1.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: N3445, TRM112, YNR046W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_COMMON: YEAST; SOURCE 11 ORGANISM_TAXID: 559292; SOURCE 12 GENE: BUD23, YCR047C, YCR47C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS I, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LETOQUART,E.HUVELLE,L.WACHEUL,G.BOURGEOIS,C.ZORBAS,M.GRAILLE, AUTHOR 2 V.HEURGUE-HAMARD,D.L.J.LAFONTAINE REVDAT 6 30-OCT-24 4QTU 1 REMARK REVDAT 5 06-DEC-23 4QTU 1 REMARK REVDAT 4 08-NOV-23 4QTU 1 REMARK REVDAT 3 24-AUG-22 4QTU 1 JRNL REMARK SEQADV LINK REVDAT 2 03-JAN-18 4QTU 1 TITLE REVDAT 1 24-DEC-14 4QTU 0 JRNL AUTH J.LETOQUART,E.HUVELLE,L.WACHEUL,G.BOURGEOIS,C.ZORBAS, JRNL AUTH 2 M.GRAILLE,V.HEURGUE-HAMARD,D.L.LAFONTAINE JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF BUD23-TRM112 REVEAL 18S JRNL TITL 2 RRNA N7-G1575 METHYLATION OCCURS ON LATE 40S PRECURSOR JRNL TITL 3 RIBOSOMES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E5518 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25489090 JRNL DOI 10.1073/PNAS.1413089111 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3136 - 5.1142 0.99 2712 142 0.1578 0.1971 REMARK 3 2 5.1142 - 4.0608 1.00 2658 140 0.1415 0.1990 REMARK 3 3 4.0608 - 3.5479 0.99 2624 139 0.1577 0.2019 REMARK 3 4 3.5479 - 3.2237 0.99 2640 138 0.1818 0.1954 REMARK 3 5 3.2237 - 2.9927 1.00 2613 138 0.1954 0.2225 REMARK 3 6 2.9927 - 2.8163 1.00 2612 137 0.1907 0.2906 REMARK 3 7 2.8163 - 2.6753 1.00 2646 140 0.1938 0.2714 REMARK 3 8 2.6753 - 2.5589 1.00 2594 136 0.1935 0.2300 REMARK 3 9 2.5589 - 2.4604 1.00 2624 138 0.1986 0.2623 REMARK 3 10 2.4604 - 2.3755 1.00 2597 137 0.1977 0.2915 REMARK 3 11 2.3755 - 2.3012 1.00 2637 139 0.2123 0.2764 REMARK 3 12 2.3012 - 2.2355 0.98 2526 131 0.2613 0.3125 REMARK 3 13 2.2355 - 2.1766 1.00 2635 139 0.2518 0.3302 REMARK 3 14 2.1766 - 2.1235 0.90 2338 123 0.2606 0.3334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5165 REMARK 3 ANGLE : 1.110 6963 REMARK 3 CHIRALITY : 0.046 783 REMARK 3 PLANARITY : 0.005 893 REMARK 3 DIHEDRAL : 15.530 1913 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.124 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: 4QTT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.86650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 135 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 GLU B 11 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ARG D 3 REMARK 465 PRO D 4 REMARK 465 GLU D 5 REMARK 465 GLU D 6 REMARK 465 LEU D 7 REMARK 465 ALA D 8 REMARK 465 PRO D 9 REMARK 465 PRO D 10 REMARK 465 GLU D 11 REMARK 465 ILE D 12 REMARK 465 PHE D 13 REMARK 465 TYR D 14 REMARK 465 ASN D 15 REMARK 465 ASP D 16 REMARK 465 SER D 17 REMARK 465 ALA D 126 REMARK 465 ASP D 127 REMARK 465 THR D 128 REMARK 465 SER D 129 REMARK 465 TYR D 130 REMARK 465 ASN D 131 REMARK 465 HIS D 203 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 465 HIS D 206 REMARK 465 HIS D 207 REMARK 465 HIS D 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 37 OG SER C 39 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 132 -38.57 -37.38 REMARK 500 PHE B 13 -46.74 -134.00 REMARK 500 CSO D 124 63.77 -111.62 REMARK 500 LYS D 161 -76.49 -94.59 REMARK 500 ASP D 186 53.27 35.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 16 SG 111.4 REMARK 620 3 CYS A 112 SG 105.0 116.6 REMARK 620 4 CYS A 115 SG 111.8 105.0 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 11 SG REMARK 620 2 CYS C 16 SG 115.8 REMARK 620 3 CYS C 112 SG 104.4 119.0 REMARK 620 4 CYS C 115 SG 104.9 102.9 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QTM RELATED DB: PDB REMARK 900 RELATED ID: 4QTT RELATED DB: PDB DBREF 4QTU A 1 135 UNP P53738 TR112_YEAST 1 135 DBREF 4QTU B 1 202 UNP P25627 BUD23_YEAST 1 202 DBREF 4QTU C 1 135 UNP P53738 TR112_YEAST 1 135 DBREF 4QTU D 1 202 UNP P25627 BUD23_YEAST 1 202 SEQADV 4QTU HIS B 203 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS B 204 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS B 205 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS B 206 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS B 207 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS B 208 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS D 203 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS D 204 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS D 205 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS D 206 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS D 207 UNP P25627 EXPRESSION TAG SEQADV 4QTU HIS D 208 UNP P25627 EXPRESSION TAG SEQRES 1 A 135 MET LYS PHE LEU THR THR ASN PHE LEU LYS CYS SER VAL SEQRES 2 A 135 LYS ALA CYS ASP THR SER ASN ASP ASN PHE PRO LEU GLN SEQRES 3 A 135 TYR ASP GLY SER LYS CYS GLN LEU VAL GLN ASP GLU SER SEQRES 4 A 135 ILE GLU PHE ASN PRO GLU PHE LEU LEU ASN ILE VAL ASP SEQRES 5 A 135 ARG VAL ASP TRP PRO ALA VAL LEU THR VAL ALA ALA GLU SEQRES 6 A 135 LEU GLY ASN ASN ALA LEU PRO PRO THR LYS PRO SER PHE SEQRES 7 A 135 PRO SER SER ILE GLN GLU LEU THR ASP ASP ASP MET ALA SEQRES 8 A 135 ILE LEU ASN ASP LEU HIS THR LEU LEU LEU GLN THR SER SEQRES 9 A 135 ILE ALA GLU GLY GLU MET LYS CYS ARG ASN CYS GLY HIS SEQRES 10 A 135 ILE TYR TYR ILE LYS ASN GLY ILE PRO ASN LEU LEU LEU SEQRES 11 A 135 PRO PRO HIS LEU VAL SEQRES 1 B 208 MET SER ARG PRO GLU GLU LEU ALA PRO PRO GLU ILE PHE SEQRES 2 B 208 TYR ASN ASP SER GLU ALA HIS LYS TYR THR GLY SER THR SEQRES 3 B 208 ARG VAL GLN HIS ILE GLN ALA LYS MET THR LEU ARG ALA SEQRES 4 B 208 LEU GLU LEU LEU ASN LEU GLN PRO CYS SER PHE ILE LEU SEQRES 5 B 208 ASP ILE GLY CYS GLY SER GLY LEU SER GLY GLU ILE LEU SEQRES 6 B 208 THR GLN GLU GLY ASP HIS VAL TRP CYS GLY LEU ASP ILE SEQRES 7 B 208 SER PRO SER MET LEU ALA THR GLY LEU SER ARG GLU LEU SEQRES 8 B 208 GLU GLY ASP LEU MET LEU GLN ASP MET GLY THR GLY ILE SEQRES 9 B 208 PRO PHE ARG ALA GLY SER PHE ASP ALA ALA ILE SER ILE SEQRES 10 B 208 SER ALA ILE GLN TRP LEU CSO ASN ALA ASP THR SER TYR SEQRES 11 B 208 ASN ASP PRO LYS GLN ARG LEU MET ARG PHE PHE ASN THR SEQRES 12 B 208 LEU TYR ALA ALA LEU LYS LYS GLY GLY LYS PHE VAL ALA SEQRES 13 B 208 GLN PHE TYR PRO LYS ASN ASP ASP GLN VAL ASP ASP ILE SEQRES 14 B 208 LEU GLN SER ALA LYS VAL ALA GLY PHE SER GLY GLY LEU SEQRES 15 B 208 VAL VAL ASP ASP PRO GLU SER LYS LYS ASN LYS LYS TYR SEQRES 16 B 208 TYR LEU VAL LEU SER SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 135 MET LYS PHE LEU THR THR ASN PHE LEU LYS CYS SER VAL SEQRES 2 C 135 LYS ALA CYS ASP THR SER ASN ASP ASN PHE PRO LEU GLN SEQRES 3 C 135 TYR ASP GLY SER LYS CYS GLN LEU VAL GLN ASP GLU SER SEQRES 4 C 135 ILE GLU PHE ASN PRO GLU PHE LEU LEU ASN ILE VAL ASP SEQRES 5 C 135 ARG VAL ASP TRP PRO ALA VAL LEU THR VAL ALA ALA GLU SEQRES 6 C 135 LEU GLY ASN ASN ALA LEU PRO PRO THR LYS PRO SER PHE SEQRES 7 C 135 PRO SER SER ILE GLN GLU LEU THR ASP ASP ASP MET ALA SEQRES 8 C 135 ILE LEU ASN ASP LEU HIS THR LEU LEU LEU GLN THR SER SEQRES 9 C 135 ILE ALA GLU GLY GLU MET LYS CYS ARG ASN CYS GLY HIS SEQRES 10 C 135 ILE TYR TYR ILE LYS ASN GLY ILE PRO ASN LEU LEU LEU SEQRES 11 C 135 PRO PRO HIS LEU VAL SEQRES 1 D 208 MET SER ARG PRO GLU GLU LEU ALA PRO PRO GLU ILE PHE SEQRES 2 D 208 TYR ASN ASP SER GLU ALA HIS LYS TYR THR GLY SER THR SEQRES 3 D 208 ARG VAL GLN HIS ILE GLN ALA LYS MET THR LEU ARG ALA SEQRES 4 D 208 LEU GLU LEU LEU ASN LEU GLN PRO CYS SER PHE ILE LEU SEQRES 5 D 208 ASP ILE GLY CYS GLY SER GLY LEU SER GLY GLU ILE LEU SEQRES 6 D 208 THR GLN GLU GLY ASP HIS VAL TRP CYS GLY LEU ASP ILE SEQRES 7 D 208 SER PRO SER MET LEU ALA THR GLY LEU SER ARG GLU LEU SEQRES 8 D 208 GLU GLY ASP LEU MET LEU GLN ASP MET GLY THR GLY ILE SEQRES 9 D 208 PRO PHE ARG ALA GLY SER PHE ASP ALA ALA ILE SER ILE SEQRES 10 D 208 SER ALA ILE GLN TRP LEU CSO ASN ALA ASP THR SER TYR SEQRES 11 D 208 ASN ASP PRO LYS GLN ARG LEU MET ARG PHE PHE ASN THR SEQRES 12 D 208 LEU TYR ALA ALA LEU LYS LYS GLY GLY LYS PHE VAL ALA SEQRES 13 D 208 GLN PHE TYR PRO LYS ASN ASP ASP GLN VAL ASP ASP ILE SEQRES 14 D 208 LEU GLN SER ALA LYS VAL ALA GLY PHE SER GLY GLY LEU SEQRES 15 D 208 VAL VAL ASP ASP PRO GLU SER LYS LYS ASN LYS LYS TYR SEQRES 16 D 208 TYR LEU VAL LEU SER SER GLY HIS HIS HIS HIS HIS HIS MODRES 4QTU CSO B 124 CYS S-HYDROXYCYSTEINE MODRES 4QTU CSO D 124 CYS S-HYDROXYCYSTEINE HET CSO B 124 7 HET CSO D 124 7 HET ZN A 201 1 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET SAM B 301 27 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HET EDO B 308 4 HET EDO B 309 4 HET EDO B 310 4 HET EDO B 311 4 HET ZN C 201 1 HET EDO C 202 4 HET EDO C 203 4 HET SAM D 301 27 HET EDO D 302 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SAM S-ADENOSYLMETHIONINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CSO 2(C3 H7 N O3 S) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 EDO 19(C2 H6 O2) FORMUL 12 SAM 2(C15 H22 N6 O5 S) FORMUL 28 HOH *173(H2 O) HELIX 1 1 LYS A 2 ASN A 7 1 6 HELIX 2 2 VAL A 13 SER A 19 5 7 HELIX 3 3 ASN A 43 VAL A 51 1 9 HELIX 4 4 ASP A 52 VAL A 54 5 3 HELIX 5 5 ASP A 55 LEU A 66 1 12 HELIX 6 6 SER A 81 LEU A 85 5 5 HELIX 7 7 THR A 86 LEU A 101 1 16 HELIX 8 8 ASN B 15 SER B 25 1 11 HELIX 9 9 SER B 25 ASN B 44 1 20 HELIX 10 10 GLY B 59 ASP B 70 1 12 HELIX 11 11 SER B 79 LEU B 87 1 9 HELIX 12 12 ASP B 99 GLY B 103 5 5 HELIX 13 13 ALA B 119 ASN B 125 5 7 HELIX 14 14 ASP B 132 ALA B 147 1 16 HELIX 15 15 ASN B 162 GLY B 177 1 16 HELIX 16 16 LYS C 2 ASN C 7 1 6 HELIX 17 17 VAL C 13 ASP C 17 5 5 HELIX 18 18 ASN C 43 VAL C 51 1 9 HELIX 19 19 ASP C 55 LEU C 66 1 12 HELIX 20 20 SER C 81 LEU C 85 5 5 HELIX 21 21 THR C 86 LEU C 101 1 16 HELIX 22 22 ALA D 19 GLY D 24 1 6 HELIX 23 23 SER D 25 ASN D 44 1 20 HELIX 24 24 GLY D 59 ASP D 70 1 12 HELIX 25 25 SER D 79 SER D 88 1 10 HELIX 26 26 ASP D 99 GLY D 103 5 5 HELIX 27 27 ALA D 119 CSO D 124 5 6 HELIX 28 28 PRO D 133 ALA D 147 1 15 HELIX 29 29 ASN D 162 GLY D 177 1 16 SHEET 1 A 3 GLN A 26 TYR A 27 0 SHEET 2 A 3 THR A 103 LYS A 111 -1 O LYS A 111 N GLN A 26 SHEET 3 A 3 GLN A 33 GLN A 36 -1 N GLN A 33 O GLU A 107 SHEET 1 B 4 GLN A 26 TYR A 27 0 SHEET 2 B 4 THR A 103 LYS A 111 -1 O LYS A 111 N GLN A 26 SHEET 3 B 4 ILE A 118 LYS A 122 -1 O TYR A 119 N MET A 110 SHEET 4 B 4 ILE A 125 PRO A 126 -1 O ILE A 125 N LYS A 122 SHEET 1 C14 ASP B 94 LEU B 97 0 SHEET 2 C14 VAL B 72 ASP B 77 1 N GLY B 75 O ASP B 94 SHEET 3 C14 PHE B 50 ILE B 54 1 N ASP B 53 O CYS B 74 SHEET 4 C14 PHE B 111 ILE B 117 1 O ILE B 115 N ILE B 54 SHEET 5 C14 LEU B 148 PHE B 158 1 O LYS B 149 N PHE B 111 SHEET 6 C14 LYS B 194 SER B 200 -1 O LEU B 197 N ALA B 156 SHEET 7 C14 SER B 179 ASP B 185 -1 N VAL B 183 O TYR B 196 SHEET 8 C14 SER D 179 ASP D 185 -1 O LEU D 182 N VAL B 184 SHEET 9 C14 LYS D 194 SER D 200 -1 O VAL D 198 N GLY D 181 SHEET 10 C14 LEU D 148 PHE D 158 -1 N ALA D 156 O LEU D 197 SHEET 11 C14 PHE D 111 ILE D 117 1 N PHE D 111 O LYS D 149 SHEET 12 C14 PHE D 50 ILE D 54 1 N LEU D 52 O ILE D 115 SHEET 13 C14 VAL D 72 ASP D 77 1 O CYS D 74 N ASP D 53 SHEET 14 C14 ASP D 94 LEU D 97 1 O ASP D 94 N GLY D 75 SHEET 1 D 3 GLN C 26 TYR C 27 0 SHEET 2 D 3 THR C 103 LYS C 111 -1 O LYS C 111 N GLN C 26 SHEET 3 D 3 GLN C 33 GLN C 36 -1 N GLN C 33 O GLU C 107 SHEET 1 E 4 GLN C 26 TYR C 27 0 SHEET 2 E 4 THR C 103 LYS C 111 -1 O LYS C 111 N GLN C 26 SHEET 3 E 4 ILE C 118 LYS C 122 -1 O TYR C 119 N MET C 110 SHEET 4 E 4 ILE C 125 ASN C 127 -1 O ASN C 127 N TYR C 120 LINK C LEU B 123 N CSO B 124 1555 1555 1.33 LINK C CSO B 124 N ASN B 125 1555 1555 1.33 LINK C LEU D 123 N CSO D 124 1555 1555 1.33 LINK C CSO D 124 N ASN D 125 1555 1555 1.33 LINK SG CYS A 11 ZN ZN A 201 1555 1555 2.43 LINK SG CYS A 16 ZN ZN A 201 1555 1555 2.27 LINK SG CYS A 112 ZN ZN A 201 1555 1555 2.26 LINK SG CYS A 115 ZN ZN A 201 1555 1555 2.35 LINK SG CYS C 11 ZN ZN C 201 1555 1555 2.35 LINK SG CYS C 16 ZN ZN C 201 1555 1555 2.28 LINK SG CYS C 112 ZN ZN C 201 1555 1555 2.41 LINK SG CYS C 115 ZN ZN C 201 1555 1555 2.42 CISPEP 1 PHE A 23 PRO A 24 0 -4.37 CISPEP 2 PHE C 23 PRO C 24 0 -6.30 SITE 1 AC1 4 CYS A 11 CYS A 16 CYS A 112 CYS A 115 SITE 1 AC2 4 LYS A 14 LEU A 134 HOH A 309 ARG B 139 SITE 1 AC3 1 GLN A 36 SITE 1 AC4 6 HIS A 117 ILE A 118 TYR A 119 TYR A 120 SITE 2 AC4 6 ASN A 127 LEU A 129 SITE 1 AC5 4 LEU A 48 ASP A 52 PHE A 78 PRO A 79 SITE 1 AC6 2 ASP A 87 TYR B 159 SITE 1 AC7 6 HOH A 315 HOH A 317 HOH A 338 GLN B 121 SITE 2 AC7 6 TRP B 122 LYS B 161 SITE 1 AC8 22 TYR B 22 GLN B 32 GLY B 55 CYS B 56 SITE 2 AC8 22 GLY B 57 LEU B 60 SER B 61 ASP B 77 SITE 3 AC8 22 ILE B 78 SER B 79 MET B 82 GLN B 98 SITE 4 AC8 22 ASP B 99 MET B 100 ILE B 117 SER B 118 SITE 5 AC8 22 ALA B 119 TRP B 122 EDO B 302 HOH B 401 SITE 6 AC8 22 HOH B 406 HOH B 438 SITE 1 AC9 4 THR A 86 ASP A 87 ASP A 88 SAM B 301 SITE 1 BC1 2 ARG B 139 ASN B 142 SITE 1 BC2 7 LEU B 170 LYS B 174 PHE B 178 SER B 179 SITE 2 BC2 7 GLY B 180 ASP D 186 GLU D 188 SITE 1 BC3 3 GLU B 188 LEU D 170 GLY D 180 SITE 1 BC4 3 SER B 25 THR B 26 ARG B 27 SITE 1 BC5 2 GLN B 67 GLU B 68 SITE 1 BC6 6 ASN A 43 ASP B 70 HIS B 71 VAL B 72 SITE 2 BC6 6 GLU B 92 HOH B 422 SITE 1 BC7 4 LEU B 45 GLU B 68 HIS B 71 HOH B 408 SITE 1 BC8 6 ILE B 12 TYR B 14 SER B 79 PRO B 80 SITE 2 BC8 6 SER B 81 HOH B 458 SITE 1 BC9 3 ARG B 38 VAL D 198 EDO D 302 SITE 1 CC1 4 CYS C 11 CYS C 16 CYS C 112 CYS C 115 SITE 1 CC2 7 THR A 18 SER A 19 ASN A 20 ASP A 21 SITE 2 CC2 7 HOH A 332 LYS C 75 SER C 77 SITE 1 CC3 4 ILE C 118 TYR C 119 TYR C 120 ASN C 127 SITE 1 CC4 18 TYR D 22 GLN D 32 GLY D 55 CYS D 56 SITE 2 CC4 18 GLY D 57 LEU D 60 SER D 61 ASP D 77 SITE 3 CC4 18 ILE D 78 SER D 79 MET D 82 GLN D 98 SITE 4 CC4 18 ASP D 99 MET D 100 ILE D 117 SER D 118 SITE 5 CC4 18 TRP D 122 HOH D 401 SITE 1 CC5 4 VAL B 183 VAL B 198 EDO B 311 ARG D 38 CRYST1 75.472 53.733 85.205 90.00 94.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013250 0.000000 0.001055 0.00000 SCALE2 0.000000 0.018611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011774 0.00000