HEADER OXIDOREDUCTASE 11-JUL-14 4QUR TITLE CRYSTAL STRUCTURE OF STACHYDRINE DEMETHYLASE IN COMPLEX WITH CYANIDE, TITLE 2 OXYGEN, AND N-METHYL PROLINE IN A NEW ORIENTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOXYGENASE; DEMETHYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STACHYDRINE DEMETHYLASE; COMPND 5 EC: 1.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI 1021; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 GENE: SMA0751; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGC KEYWDS COMPOSITE DATASETS, PHOTOELECTRON, ENZYME-CATALYZED REACTIONS, KEYWDS 2 CYANIDE, SYNCHROTRON, RIESKE TYPE MONOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,B.ANDI,A.GIZZI,J.B.BONANNO,S.C.ALMO,A.M.ORVILLE REVDAT 4 20-SEP-23 4QUR 1 REMARK SEQADV LINK REVDAT 3 09-MAR-16 4QUR 1 AUTHOR JRNL REVDAT 2 14-OCT-15 4QUR 1 ATOM REVDAT 1 15-JUL-15 4QUR 0 JRNL AUTH R.AGARWAL,B.ANDI,A.GIZZI,J.B.BONANNO,S.C.ALMO,A.M.ORVILLE JRNL TITL TRACKING PHOTOELECTRON INDUCED IN-CRYSTALLO ENZYME CATALYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1423) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 50842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5807 - 4.6076 1.00 2983 153 0.1860 0.2010 REMARK 3 2 4.6076 - 3.6585 1.00 2768 163 0.1683 0.1672 REMARK 3 3 3.6585 - 3.1964 1.00 2735 142 0.1910 0.2243 REMARK 3 4 3.1964 - 2.9044 1.00 2717 149 0.2126 0.2329 REMARK 3 5 2.9044 - 2.6963 1.00 2724 127 0.2115 0.2389 REMARK 3 6 2.6963 - 2.5374 1.00 2659 169 0.2150 0.2642 REMARK 3 7 2.5374 - 2.4103 1.00 2696 143 0.2174 0.2303 REMARK 3 8 2.4103 - 2.3054 1.00 2676 130 0.2166 0.2761 REMARK 3 9 2.3054 - 2.2167 0.96 2560 129 0.2383 0.2675 REMARK 3 10 2.2167 - 2.1402 1.00 2660 131 0.2204 0.2925 REMARK 3 11 2.1402 - 2.0733 1.00 2634 156 0.2217 0.2669 REMARK 3 12 2.0733 - 2.0140 1.00 2654 158 0.2154 0.2724 REMARK 3 13 2.0140 - 1.9610 1.00 2607 164 0.2163 0.2097 REMARK 3 14 1.9610 - 1.9132 0.99 2653 130 0.2423 0.2949 REMARK 3 15 1.9132 - 1.8697 0.99 2594 145 0.2526 0.3036 REMARK 3 16 1.8697 - 1.8299 1.00 2672 122 0.2325 0.2389 REMARK 3 17 1.8299 - 1.7933 1.00 2657 125 0.2288 0.2890 REMARK 3 18 1.7933 - 1.7590 1.00 2613 144 0.2316 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3394 REMARK 3 ANGLE : 1.341 4628 REMARK 3 CHIRALITY : 0.083 497 REMARK 3 PLANARITY : 0.007 598 REMARK 3 DIHEDRAL : 13.978 1224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.759 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 42.10 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 36.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG3350, 10% GLYCEROL, 100 MM REMARK 280 HEPES, 25 MM HEXAMMINECOBALT CHLORIDE, 100 MM STACHYDRINE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.32700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.32700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.32700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 89.32700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.32700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 89.32700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 49.03250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 254.78034 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -196.13000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 169.85356 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO NCO A 504 LIES ON A SPECIAL POSITION. REMARK 375 N4 NCO A 504 LIES ON A SPECIAL POSITION. REMARK 375 N6 NCO A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 PRO A 406 REMARK 465 ARG A 407 REMARK 465 GLN A 408 REMARK 465 VAL A 409 REMARK 465 ALA A 410 REMARK 465 ALA A 411 REMARK 465 GLU A 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 -74.87 -108.65 REMARK 500 HIS A 88 -80.71 -74.76 REMARK 500 GLU A 268 -131.40 52.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 FES A 501 S1 108.8 REMARK 620 3 FES A 501 S2 112.6 106.6 REMARK 620 4 CYS A 106 SG 106.2 108.1 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 ND1 REMARK 620 2 FES A 501 S1 115.5 REMARK 620 3 FES A 501 S2 112.8 105.5 REMARK 620 4 HIS A 109 ND1 90.5 112.6 120.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 204 NE2 REMARK 620 2 HIS A 209 NE2 94.9 REMARK 620 3 ASP A 360 OD1 104.1 90.8 REMARK 620 4 OXY A 506 O1 99.0 152.6 108.3 REMARK 620 5 OXY A 506 O2 125.0 109.3 123.4 43.8 REMARK 620 6 CYN A 507 C 113.6 131.8 116.6 21.2 22.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3BY A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYN A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VCA RELATED DB: PDB REMARK 900 RELATED ID: 3VCP RELATED DB: PDB REMARK 900 RELATED ID: 4QUP RELATED DB: PDB REMARK 900 RELATED ID: 4QUQ RELATED DB: PDB DBREF 4QUR A 1 412 UNP Q92ZP9 Q92ZP9_RHIME 1 412 SEQADV 4QUR MET A -22 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR HIS A -21 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR HIS A -20 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR HIS A -19 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR HIS A -18 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR HIS A -17 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR HIS A -16 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR SER A -15 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR SER A -14 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR GLY A -13 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR VAL A -12 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR ASP A -11 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR LEU A -10 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR GLY A -9 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR THR A -8 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR GLU A -7 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR ASN A -6 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR LEU A -5 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR TYR A -4 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR PHE A -3 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR GLN A -2 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR SER A -1 UNP Q92ZP9 EXPRESSION TAG SEQADV 4QUR MET A 0 UNP Q92ZP9 EXPRESSION TAG SEQRES 1 A 435 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 435 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET THR ALA SEQRES 3 A 435 ASN PRO THR SER ILE HIS GLN ARG LEU ASP ARG ARG LEU SEQRES 4 A 435 SER GLY PHE SER LEU GLU GLN PRO PHE TYR THR SER PRO SEQRES 5 A 435 GLU VAL TYR ALA LEU ASP LEU GLN HIS ILE PHE TYR LYS SEQRES 6 A 435 GLN TRP LEU TYR ALA VAL PRO VAL CYS GLN LEU ALA LYS SEQRES 7 A 435 ALA GLY SER TYR THR THR LEU ARG VAL GLY ALA TYR GLU SEQRES 8 A 435 VAL VAL ILE VAL ARG SER ARG ASP GLY GLU VAL ARG ALA SEQRES 9 A 435 PHE HIS ASN SER CYS ARG HIS ARG GLY SER LEU ILE CYS SEQRES 10 A 435 LYS ALA ARG GLN GLY GLN VAL ALA LYS LEU VAL CYS PRO SEQRES 11 A 435 TYR HIS GLN TRP THR TYR GLU LEU ASP GLY LYS LEU ILE SEQRES 12 A 435 TRP ALA ASN ASP MET GLY PRO ASP PHE ASP ALA SER LYS SEQRES 13 A 435 TYR GLY LEU LYS PRO VAL ASN LEU ARG ASN LEU ASP GLY SEQRES 14 A 435 LEU ILE TYR ILE CYS LEU SER ASP THR PRO PRO ASP PHE SEQRES 15 A 435 GLN THR PHE ALA GLN LEU ALA ARG PRO TYR LEU GLU VAL SEQRES 16 A 435 HIS ASP LEU LYS ASP ALA LYS VAL ALA PHE THR SER THR SEQRES 17 A 435 ILE ILE GLU LYS GLY ASN TRP LYS LEU VAL TRP GLU ASN SEQRES 18 A 435 ASN ARG GLU CYS TYR HIS CYS SER SER ASN HIS PRO ALA SEQRES 19 A 435 LEU CYS ARG SER PHE PRO LEU ASP PRO GLU VAL ALA GLY SEQRES 20 A 435 VAL GLN ALA ASP GLY GLY VAL SER LYS LYS LEU GLN ALA SEQRES 21 A 435 HIS PHE ASP ARG CYS GLU ALA ALA GLY THR PRO ALA GLN SEQRES 22 A 435 PHE VAL LEU ALA GLY ASP GLY GLN TYR ARG LEU ALA ARG SEQRES 23 A 435 MET PRO LEU GLN GLU LYS ALA LEU SER TYR THR MET ASP SEQRES 24 A 435 GLY LYS ALA ALA VAL SER ARG HIS LEU GLY ARG VAL ALA SEQRES 25 A 435 PRO PRO ASP ALA GLY THR LEU LEU MET PHE HIS TYR PRO SEQRES 26 A 435 SER THR TRP ASN HIS PHE LEU PRO ASP HIS SER LEU THR SEQRES 27 A 435 PHE ARG VAL MET PRO ILE SER PRO THR GLU THR GLU VAL SEQRES 28 A 435 THR THR THR TRP LEU VAL HIS LYS ASP ALA VAL GLU GLY SEQRES 29 A 435 VAL ASP TYR ASP LEU LYS ARG LEU THR GLU VAL TRP ILE SEQRES 30 A 435 ALA THR ASN ASP GLU ASP ARG GLU ILE VAL GLU THR ASN SEQRES 31 A 435 GLN GLN GLY ILE LEU SER PRO ALA TYR VAL PRO GLY PRO SEQRES 32 A 435 TYR SER PRO GLY GLN GLU SER GLY VAL MET GLN PHE VAL SEQRES 33 A 435 ASP TRP TYR ALA ALA SER LEU GLU ARG ALA LEU ALA PRO SEQRES 34 A 435 ARG GLN VAL ALA ALA GLU HET FES A 501 4 HET FE A 502 1 HET TRS A 503 8 HET NCO A 504 7 HET 3BY A 505 9 HET OXY A 506 2 HET CYN A 507 2 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM FE FE (III) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NCO COBALT HEXAMMINE(III) HETNAM 3BY 1-METHYL-L-PROLINE HETNAM OXY OXYGEN MOLECULE HETNAM CYN CYANIDE ION HETSYN TRS TRIS BUFFER FORMUL 2 FES FE2 S2 FORMUL 3 FE FE 3+ FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 NCO CO H18 N6 3+ FORMUL 6 3BY C6 H11 N O2 FORMUL 7 OXY O2 FORMUL 8 CYN C N 1- FORMUL 9 HOH *255(H2 O) HELIX 1 1 GLY A -9 ALA A 3 1 13 HELIX 2 2 SER A 7 ARG A 15 1 9 HELIX 3 3 GLU A 22 SER A 28 1 7 HELIX 4 4 SER A 28 ILE A 39 1 12 HELIX 5 5 CYS A 51 ALA A 54 5 4 HELIX 6 6 ASP A 130 TYR A 134 5 5 HELIX 7 7 PHE A 159 VAL A 172 1 14 HELIX 8 8 HIS A 173 LYS A 176 5 4 HELIX 9 9 ASN A 191 ARG A 200 1 10 HELIX 10 10 HIS A 204 HIS A 209 1 6 HELIX 11 11 ALA A 211 SER A 215 5 5 HELIX 12 12 ASP A 219 GLY A 224 1 6 HELIX 13 13 VAL A 225 GLY A 229 5 5 HELIX 14 14 SER A 232 ALA A 245 1 14 HELIX 15 15 ASP A 345 LEU A 372 1 28 HELIX 16 16 GLU A 386 ALA A 405 1 20 SHEET 1 A 7 LEU A 45 PRO A 49 0 SHEET 2 A 7 LEU A 147 CYS A 151 -1 O ILE A 148 N ALA A 47 SHEET 3 A 7 PRO A 138 LEU A 144 -1 N LEU A 144 O LEU A 147 SHEET 4 A 7 VAL A 79 HIS A 83 -1 N ALA A 81 O VAL A 139 SHEET 5 A 7 TYR A 67 ARG A 73 -1 N VAL A 72 O ARG A 80 SHEET 6 A 7 SER A 58 VAL A 64 -1 N THR A 60 O ILE A 71 SHEET 7 A 7 GLN A 98 GLN A 100 -1 O GLY A 99 N TYR A 59 SHEET 1 B 3 LEU A 104 VAL A 105 0 SHEET 2 B 3 THR A 112 TYR A 113 -1 O TYR A 113 N LEU A 104 SHEET 3 B 3 LEU A 119 TRP A 121 -1 O TRP A 121 N THR A 112 SHEET 1 C 7 ALA A 178 GLU A 188 0 SHEET 2 C 7 GLU A 325 HIS A 335 -1 O THR A 330 N SER A 184 SHEET 3 C 7 SER A 313 SER A 322 -1 N MET A 319 O GLU A 327 SHEET 4 C 7 THR A 304 PHE A 308 -1 N HIS A 307 O LEU A 314 SHEET 5 C 7 THR A 295 HIS A 300 -1 N HIS A 300 O THR A 304 SHEET 6 C 7 TYR A 259 MET A 264 -1 N ALA A 262 O LEU A 297 SHEET 7 C 7 VAL A 252 LEU A 253 -1 N VAL A 252 O LEU A 261 SSBOND 1 CYS A 202 CYS A 205 1555 1555 2.03 LINK SG CYS A 86 FE2 FES A 501 1555 1555 2.42 LINK ND1 HIS A 88 FE1 FES A 501 1555 1555 2.25 LINK SG CYS A 106 FE2 FES A 501 1555 1555 2.36 LINK ND1 HIS A 109 FE1 FES A 501 1555 1555 2.25 LINK NE2 HIS A 204 FE FE A 502 1555 1555 2.08 LINK NE2 HIS A 209 FE FE A 502 1555 1555 2.10 LINK OD1 ASP A 360 FE FE A 502 1555 1555 1.95 LINK FE FE A 502 O1 BOXY A 506 1555 1555 1.77 LINK FE FE A 502 O2 BOXY A 506 1555 1555 2.07 LINK FE FE A 502 C ACYN A 507 1555 1555 1.78 CISPEP 1 ALA A 289 PRO A 290 0 -0.18 CISPEP 2 TYR A 301 PRO A 302 0 5.40 SITE 1 AC1 6 CYS A 86 HIS A 88 ARG A 89 CYS A 106 SITE 2 AC1 6 HIS A 109 TRP A 111 SITE 1 AC2 5 HIS A 204 HIS A 209 ASP A 360 OXY A 506 SITE 2 AC2 5 CYN A 507 SITE 1 AC3 8 ARG A 14 ARG A 15 LEU A 16 GLU A 22 SITE 2 AC3 8 PRO A 378 HOH A 784 HOH A 819 HOH A 827 SITE 1 AC4 4 LEU A 12 ASP A 13 ARG A 15 HOH A 817 SITE 1 AC5 12 ASN A 199 GLU A 201 CYS A 202 PHE A 216 SITE 2 AC5 12 ALA A 223 TRP A 305 HIS A 307 TRP A 353 SITE 3 AC5 12 OXY A 506 CYN A 507 HOH A 646 HOH A 854 SITE 1 AC6 6 ASN A 198 HIS A 204 HIS A 209 ASP A 360 SITE 2 AC6 6 FE A 502 3BY A 505 SITE 1 AC7 5 HIS A 204 HIS A 209 ASP A 360 FE A 502 SITE 2 AC7 5 3BY A 505 CRYST1 98.065 98.065 178.654 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010197 0.005887 0.000000 0.00000 SCALE2 0.000000 0.011775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005597 0.00000