HEADER TRANSFERASE 11-JUL-14 4QUS TITLE 1.28 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PREDICTED TITLE 2 ACYLTRANSFERASE WITH ACYL-COA N-ACYLTRANSFERASE DOMAIN (YPEA) FROM TITLE 3 ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE YPEA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PREDICTED ACYLTRANSFERASE WITH ACYL-COA N-ACYLTRANSFERASE COMPND 5 DOMAIN; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 GENE: B2434, JW2427, YPEA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG28 KEYWDS PREDICTED ACYLTRANSFERASE, ACYL-COA N-ACYLTRANSFERASE DOMAIN, GNAT KEYWDS 2 ACETYLTRANSFERASE, CSGID, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS OF INFECTIOUS DISEASES, NIAID, NATIONAL INSTITUTE OF KEYWDS 4 ALLERGY AND INFECTIOUS DISEASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,E.V.FILIPPOVA,G.MINASOV,K.J.FLORES,I.DUBROVSKA, AUTHOR 2 L.SHUVALOVA,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 20-SEP-23 4QUS 1 REMARK SEQADV REVDAT 2 22-NOV-17 4QUS 1 REMARK REVDAT 1 23-JUL-14 4QUS 0 JRNL AUTH A.S.HALAVATY,E.V.FILIPPOVA,G.MINASOV,K.J.FLORES,I.DUBROVSKA, JRNL AUTH 2 L.SHUVALOVA,W.F.ANDERSON JRNL TITL 1.28 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PREDICTED JRNL TITL 2 ACYLTRANSFERASE WITH ACYL-COA N-ACYLTRANSFERASE DOMAIN JRNL TITL 3 (YPEA) FROM ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 82845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.139 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4387 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6014 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 314 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2343 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2609 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2457 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3540 ; 1.643 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5652 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 4.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;31.485 ;24.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;10.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.249 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3075 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5066 ; 2.143 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 70 ;53.156 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5488 ;11.864 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): 101.5170 78.2400 -45.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.1339 REMARK 3 T33: 0.1179 T12: -0.0543 REMARK 3 T13: 0.0186 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 5.5907 L22: 3.0626 REMARK 3 L33: 7.6081 L12: -3.2571 REMARK 3 L13: -4.5260 L23: 1.7926 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.2218 S13: 0.2427 REMARK 3 S21: -0.0710 S22: 0.0646 S23: -0.1705 REMARK 3 S31: -0.1659 S32: 0.0743 S33: -0.0559 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 96.9774 71.2010 -39.2885 REMARK 3 T TENSOR REMARK 3 T11: 0.0059 T22: 0.0250 REMARK 3 T33: 0.0308 T12: -0.0023 REMARK 3 T13: 0.0068 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.7257 L22: 0.4140 REMARK 3 L33: 0.3494 L12: -0.0050 REMARK 3 L13: -0.1145 L23: 0.0487 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.1313 S13: -0.0693 REMARK 3 S21: -0.0443 S22: -0.0060 S23: -0.0144 REMARK 3 S31: 0.0056 S32: -0.0409 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 106.3892 59.5424 -35.9038 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0314 REMARK 3 T33: 0.1000 T12: -0.0021 REMARK 3 T13: 0.0142 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.2019 L22: 0.8846 REMARK 3 L33: 5.3646 L12: 0.2582 REMARK 3 L13: -1.8270 L23: 0.6646 REMARK 3 S TENSOR REMARK 3 S11: -0.1558 S12: 0.2633 S13: -0.2253 REMARK 3 S21: -0.0759 S22: 0.0852 S23: -0.0576 REMARK 3 S31: 0.4201 S32: -0.0734 S33: 0.0706 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 94.2843 60.3584 -25.7291 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.0348 REMARK 3 T33: 0.1178 T12: -0.0039 REMARK 3 T13: 0.0020 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.1777 L22: 0.6255 REMARK 3 L33: 0.7508 L12: -0.4909 REMARK 3 L13: -0.1910 L23: -0.2747 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.0509 S13: -0.2538 REMARK 3 S21: -0.0136 S22: 0.0334 S23: 0.0648 REMARK 3 S31: 0.1173 S32: -0.0461 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 91.5142 76.8732 -5.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.1328 REMARK 3 T33: 0.0471 T12: 0.0339 REMARK 3 T13: 0.0029 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 7.1074 L22: 3.1955 REMARK 3 L33: 2.5476 L12: 1.8871 REMARK 3 L13: -0.0086 L23: -0.8847 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: -0.5062 S13: 0.0239 REMARK 3 S21: 0.1598 S22: -0.0746 S23: 0.2141 REMARK 3 S31: -0.1239 S32: -0.2593 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 97.6194 70.9295 -11.2613 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0437 REMARK 3 T33: 0.0334 T12: 0.0093 REMARK 3 T13: -0.0020 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.9735 L22: 0.3685 REMARK 3 L33: 0.4924 L12: -0.0155 REMARK 3 L13: 0.3699 L23: 0.0544 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.1940 S13: -0.1066 REMARK 3 S21: 0.0847 S22: 0.0214 S23: -0.0350 REMARK 3 S31: 0.0272 S32: -0.0668 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 95.7571 54.0575 -14.3895 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1249 REMARK 3 T33: 0.1527 T12: 0.0291 REMARK 3 T13: 0.0276 T23: 0.1172 REMARK 3 L TENSOR REMARK 3 L11: 10.2764 L22: 4.6280 REMARK 3 L33: 3.9905 L12: -1.1884 REMARK 3 L13: -2.8358 L23: 0.2046 REMARK 3 S TENSOR REMARK 3 S11: -0.2410 S12: -1.0424 S13: -0.8171 REMARK 3 S21: 0.3467 S22: 0.0032 S23: 0.0228 REMARK 3 S31: 0.5283 S32: 0.2537 S33: 0.2379 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 112.5035 70.4796 -18.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.0235 REMARK 3 T33: 0.0789 T12: 0.0162 REMARK 3 T13: 0.0021 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.3847 L22: 0.5977 REMARK 3 L33: 0.8957 L12: 0.1980 REMARK 3 L13: 0.3600 L23: 0.0577 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0105 S13: -0.0877 REMARK 3 S21: 0.0061 S22: -0.0014 S23: -0.0621 REMARK 3 S31: -0.0097 S32: 0.0789 S33: 0.0436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BIMORPH K-B PAIR MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML PROTEIN (NO TAG) IN 10 MM TRIS REMARK 280 -HCL, PH 8.3, 500 MM SODIUM CHLORIDE, 5 MM BME, CRYSTALLIZATION: REMARK 280 THE PACT SUITE A6 (#6): 0.1 M SPG BUFFER, PH 9.0, 25% W/V REMARK 280 PEG1500, CRYO-PROTECTION: WELL SOLUTION SOAK, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.40850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.40850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.08350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.40850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.40850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.08350 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 45.40850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.40850 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.08350 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 45.40850 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 45.40850 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.08350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 181.63400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 181.63400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 181.63400 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 181.63400 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 141 REMARK 465 ALA A 142 REMARK 465 GLY A 143 REMARK 465 GLU A 144 REMARK 465 ASN A 145 REMARK 465 LEU A 146 REMARK 465 TYR A 147 REMARK 465 PHE A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 36 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 109.38 174.47 REMARK 500 HIS A 65 -43.22 -138.84 REMARK 500 ASP B 41 106.45 171.92 REMARK 500 HIS B 65 -42.73 -138.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP92645 RELATED DB: TARGETTRACK DBREF 4QUS A 1 141 UNP P76539 YPEA_ECOLI 1 141 DBREF 4QUS B 1 141 UNP P76539 YPEA_ECOLI 1 141 SEQADV 4QUS ALA A 142 UNP P76539 EXPRESSION TAG SEQADV 4QUS GLY A 143 UNP P76539 EXPRESSION TAG SEQADV 4QUS GLU A 144 UNP P76539 EXPRESSION TAG SEQADV 4QUS ASN A 145 UNP P76539 EXPRESSION TAG SEQADV 4QUS LEU A 146 UNP P76539 EXPRESSION TAG SEQADV 4QUS TYR A 147 UNP P76539 EXPRESSION TAG SEQADV 4QUS PHE A 148 UNP P76539 EXPRESSION TAG SEQADV 4QUS GLN A 149 UNP P76539 EXPRESSION TAG SEQADV 4QUS ALA B 142 UNP P76539 EXPRESSION TAG SEQADV 4QUS GLY B 143 UNP P76539 EXPRESSION TAG SEQADV 4QUS GLU B 144 UNP P76539 EXPRESSION TAG SEQADV 4QUS ASN B 145 UNP P76539 EXPRESSION TAG SEQADV 4QUS LEU B 146 UNP P76539 EXPRESSION TAG SEQADV 4QUS TYR B 147 UNP P76539 EXPRESSION TAG SEQADV 4QUS PHE B 148 UNP P76539 EXPRESSION TAG SEQADV 4QUS GLN B 149 UNP P76539 EXPRESSION TAG SEQRES 1 A 149 MET GLU ILE ARG VAL PHE ARG GLN GLU ASP PHE GLU GLU SEQRES 2 A 149 VAL ILE THR LEU TRP GLU ARG CYS ASP LEU LEU ARG PRO SEQRES 3 A 149 TRP ASN ASP PRO GLU MET ASP ILE GLU ARG LYS MET ASN SEQRES 4 A 149 HIS ASP VAL SER LEU PHE LEU VAL ALA GLU VAL ASN GLY SEQRES 5 A 149 ASP VAL VAL GLY THR VAL MET GLY GLY TYR ASP GLY HIS SEQRES 6 A 149 ARG GLY SER ALA TYR TYR LEU GLY VAL HIS PRO GLU PHE SEQRES 7 A 149 ARG GLY ARG GLY ILE ALA ASN ALA LEU LEU ASN ARG LEU SEQRES 8 A 149 GLU LYS LYS LEU ILE ALA ARG GLY CYS PRO LYS ILE GLN SEQRES 9 A 149 ILE ASN VAL PRO GLU ASP ASN ASP MET VAL LEU GLY MET SEQRES 10 A 149 TYR GLU ARG LEU GLY TYR GLU HIS ALA ASP VAL LEU SER SEQRES 11 A 149 LEU GLY LYS ARG LEU ILE GLU ASP GLU GLU TYR ALA GLY SEQRES 12 A 149 GLU ASN LEU TYR PHE GLN SEQRES 1 B 149 MET GLU ILE ARG VAL PHE ARG GLN GLU ASP PHE GLU GLU SEQRES 2 B 149 VAL ILE THR LEU TRP GLU ARG CYS ASP LEU LEU ARG PRO SEQRES 3 B 149 TRP ASN ASP PRO GLU MET ASP ILE GLU ARG LYS MET ASN SEQRES 4 B 149 HIS ASP VAL SER LEU PHE LEU VAL ALA GLU VAL ASN GLY SEQRES 5 B 149 ASP VAL VAL GLY THR VAL MET GLY GLY TYR ASP GLY HIS SEQRES 6 B 149 ARG GLY SER ALA TYR TYR LEU GLY VAL HIS PRO GLU PHE SEQRES 7 B 149 ARG GLY ARG GLY ILE ALA ASN ALA LEU LEU ASN ARG LEU SEQRES 8 B 149 GLU LYS LYS LEU ILE ALA ARG GLY CYS PRO LYS ILE GLN SEQRES 9 B 149 ILE ASN VAL PRO GLU ASP ASN ASP MET VAL LEU GLY MET SEQRES 10 B 149 TYR GLU ARG LEU GLY TYR GLU HIS ALA ASP VAL LEU SER SEQRES 11 B 149 LEU GLY LYS ARG LEU ILE GLU ASP GLU GLU TYR ALA GLY SEQRES 12 B 149 GLU ASN LEU TYR PHE GLN HET PO4 A 201 5 HET PO4 B 201 5 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *537(H2 O) HELIX 1 1 ARG A 7 GLU A 9 5 3 HELIX 2 2 ASP A 10 CYS A 21 1 12 HELIX 3 3 ASP A 29 ASP A 41 1 13 HELIX 4 4 GLY A 82 ARG A 98 1 17 HELIX 5 5 ASN A 111 LEU A 121 1 11 HELIX 6 6 ARG B 7 GLU B 9 5 3 HELIX 7 7 ASP B 10 CYS B 21 1 12 HELIX 8 8 ASP B 29 ASP B 41 1 13 HELIX 9 9 PRO B 76 ARG B 79 5 4 HELIX 10 10 GLY B 82 ARG B 98 1 17 HELIX 11 11 ASN B 111 LEU B 121 1 11 HELIX 12 12 GLU B 137 TYR B 141 5 5 SHEET 1 A 4 GLU A 2 VAL A 5 0 SHEET 2 A 4 PHE A 45 VAL A 50 -1 O VAL A 47 N ARG A 4 SHEET 3 A 4 ASP A 53 TYR A 62 -1 O VAL A 55 N ALA A 48 SHEET 4 A 4 GLY A 67 VAL A 74 -1 O TYR A 70 N MET A 59 SHEET 1 B 3 LYS A 102 VAL A 107 0 SHEET 2 B 3 LEU B 129 ARG B 134 -1 O LEU B 129 N VAL A 107 SHEET 3 B 3 GLU A 124 HIS A 125 -1 N GLU A 124 O GLY B 132 SHEET 1 C 3 LYS B 102 PRO B 108 0 SHEET 2 C 3 VAL A 128 ARG A 134 -1 N LEU A 129 O VAL B 107 SHEET 3 C 3 GLU B 124 HIS B 125 -1 O GLU B 124 N GLY A 132 SHEET 1 D 4 GLU B 2 VAL B 5 0 SHEET 2 D 4 PHE B 45 VAL B 50 -1 O VAL B 47 N ARG B 4 SHEET 3 D 4 ASP B 53 TYR B 62 -1 O VAL B 55 N ALA B 48 SHEET 4 D 4 GLY B 67 VAL B 74 -1 O TYR B 70 N MET B 59 SITE 1 AC1 12 ARG A 66 LYS A 102 HOH A 312 HOH A 322 SITE 2 AC1 12 HOH A 370 HOH A 405 HOH A 410 HOH A 483 SITE 3 AC1 12 HOH A 489 TRP B 27 ASN B 28 HOH B 394 SITE 1 AC2 11 TRP A 27 ASN A 28 HOH A 318 ARG B 66 SITE 2 AC2 11 LYS B 102 HOH B 349 HOH B 360 HOH B 412 SITE 3 AC2 11 HOH B 433 HOH B 440 HOH B 443 SITE 1 AC3 8 HIS A 40 HOH A 328 HIS B 40 ASP B 41 SITE 2 AC3 8 HOH B 309 HOH B 311 HOH B 392 HOH B 408 SITE 1 AC4 7 TYR B 70 TYR B 71 HOH B 352 HOH B 389 SITE 2 AC4 7 HOH B 394 HOH B 475 HOH B 554 SITE 1 AC5 5 GLY B 80 ARG B 81 GLY B 82 HOH B 427 SITE 2 AC5 5 HOH B 563 CRYST1 90.817 90.817 84.167 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011881 0.00000