HEADER UNKNOWN FUNCTION 15-JUL-14 4QVS TITLE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF S-LAYER DOMAIN-CONTAINING TITLE 2 PROTEIN (RESIDUES 221-444) FROM CLOSTRIDIUM THERMOCELLUM ATCC 27405 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-LAYER DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 221-444; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINICLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2506; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS HUMAN MICROBIOME, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, PSI- KEYWDS 2 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,Z.WAWRZAK,E.V.FILIPPOVA,G.MINASOV,O.KIRYUKHINA, AUTHOR 2 L.SHUVALOVA,R.JEDRZEJCZAK,A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER AUTHOR 3 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 22-NOV-17 4QVS 1 REMARK REVDAT 1 30-JUL-14 4QVS 0 JRNL AUTH A.S.HALAVATY,Z.WAWRZAK,E.V.FILIPPOVA,G.MINASOV,O.KIRYUKHINA, JRNL AUTH 2 L.SHUVALOVA,R.JEDRZEJCZAK,A.JOACHIMIAK,W.F.ANDERSON JRNL TITL 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF S-LAYER JRNL TITL 2 DOMAIN-CONTAINING PROTEIN (RESIDUES 221-444) FROM JRNL TITL 3 CLOSTRIDIUM THERMOCELLUM ATCC 27405 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.60000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 6.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1725 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1525 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2340 ; 1.814 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3518 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 4.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;30.246 ;25.119 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;10.693 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;14.100 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2015 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 413 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 221 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9955 22.9051 81.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.1329 REMARK 3 T33: 0.0229 T12: -0.0069 REMARK 3 T13: 0.0194 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.8644 L22: 1.3275 REMARK 3 L33: 1.0777 L12: 0.4747 REMARK 3 L13: 0.4266 L23: -0.8905 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.2951 S13: 0.1972 REMARK 3 S21: 0.2173 S22: -0.1149 S23: 0.0245 REMARK 3 S31: -0.2017 S32: -0.0384 S33: 0.0684 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2886 5.7955 82.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.1571 REMARK 3 T33: 0.0655 T12: 0.0068 REMARK 3 T13: -0.0227 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 2.0203 L22: 2.4097 REMARK 3 L33: 1.1234 L12: 0.0013 REMARK 3 L13: -0.0972 L23: 0.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.1943 S13: -0.3079 REMARK 3 S21: 0.1350 S22: -0.0215 S23: -0.2011 REMARK 3 S31: 0.1067 S32: 0.0404 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8405 -8.4474 107.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.3161 T22: 0.2027 REMARK 3 T33: 0.0994 T12: -0.0106 REMARK 3 T13: 0.1073 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 4.8550 L22: 1.7001 REMARK 3 L33: 2.9475 L12: -1.1403 REMARK 3 L13: 2.7436 L23: -0.5518 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.3654 S13: 0.1665 REMARK 3 S21: -0.4554 S22: 0.0424 S23: -0.3695 REMARK 3 S31: -0.2866 S32: -0.1293 S33: -0.0496 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8677 -12.2684 113.5942 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.1647 REMARK 3 T33: 0.0312 T12: 0.0098 REMARK 3 T13: 0.0113 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.8757 L22: 2.4651 REMARK 3 L33: 0.7886 L12: -0.2453 REMARK 3 L13: -0.5487 L23: 0.2837 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.2066 S13: 0.1318 REMARK 3 S21: -0.1182 S22: -0.0640 S23: -0.0115 REMARK 3 S31: 0.0798 S32: -0.0438 S33: 0.0787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, MOSFLM REMARK 200 DATA SCALING SOFTWARE : POINTLESS, AIMLESS, XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 9.35 MG/ML IN 10 MM TRIS-HCL REMARK 280 PH 8.3, 500 MM NACL, 5 MM BME, CRYSTALLIZATION: THE PEGS II REMARK 280 SUITE G11 (83): 0.5 M LITHIUM CHLORIDE, 0.1 M TRIS PH 8.5. 28% REMARK 280 (W/V) PEG 6000, CYO: WELL SOLUTION, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.19900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.19900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.97900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.40650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.97900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.40650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.19900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.97900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.40650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.19900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.97900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.40650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 196.79600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 218 REMARK 465 ASN A 219 REMARK 465 ALA A 220 REMARK 465 ARG A 383 REMARK 465 VAL A 439 REMARK 465 ALA A 440 REMARK 465 THR A 441 REMARK 465 ARG A 442 REMARK 465 VAL A 443 REMARK 465 ASN A 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 317 CG - SE - CE ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 237 15.64 -141.24 REMARK 500 ASP A 272 12.43 -149.32 REMARK 500 ALA A 437 5.28 -68.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 644 O REMARK 620 2 ASN A 264 O 169.5 REMARK 620 3 MSE A 227 O 88.6 98.3 REMARK 620 4 ASN A 262 O 76.8 93.2 145.6 REMARK 620 5 ASP A 229 OD1 95.6 78.1 78.3 72.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC113088 RELATED DB: TARGETTRACK DBREF 4QVS A 221 444 UNP A3DIC9 A3DIC9_CLOTH 221 444 SEQADV 4QVS SER A 218 UNP A3DIC9 EXPRESSION TAG SEQADV 4QVS ASN A 219 UNP A3DIC9 EXPRESSION TAG SEQADV 4QVS ALA A 220 UNP A3DIC9 EXPRESSION TAG SEQRES 1 A 227 SER ASN ALA GLU THR GLY ALA TRP TYR MSE PHE ASP GLU SEQRES 2 A 227 ALA VAL GLU GLY SER THR ASN GLU PHE LYS ASP TYR LYS SEQRES 3 A 227 GLY ASN HIS GLY ASN ALA VAL LEU TYR SER ALA ASN GLY SEQRES 4 A 227 VAL VAL PRO GLY LEU ASN GLY ASN SER VAL SER LEU ASP SEQRES 5 A 227 GLY VAL ASP ASP TYR VAL ALA LEU PRO ASP GLY ILE ALA SEQRES 6 A 227 GLY THR PHE TYR ASN PHE THR ILE ALA PHE TRP VAL ARG SEQRES 7 A 227 LEU ASP THR ILE GLY GLU GLN PRO ILE PHE ASP PHE PHE SEQRES 8 A 227 ASP SER GLY SER ASN ASN LYS TYR MSE ARG LEU THR ALA SEQRES 9 A 227 GLU SER ASP GLY LYS ILE LYS PHE ALA MSE THR GLN SER SEQRES 10 A 227 GLY TYR TYR GLY GLU LYS THR ILE THR SER GLY SER ALA SEQRES 11 A 227 LEU THR GLU GLY VAL TRP LYS HIS VAL ALA VAL THR LEU SEQRES 12 A 227 SER GLY ASP THR GLY THR LEU TYR ILE ASN GLY GLU ASN SEQRES 13 A 227 VAL GLY GLU ASN ASN THR LEU SER LEU ARG PRO LEU THR SEQRES 14 A 227 PHE LEU GLY GLU THR SER LYS GLY TYR ILE GLY LYS SER SEQRES 15 A 227 HIS GLN THR ASP SER SER GLU ASP PRO TYR TYR ASN SER SEQRES 16 A 227 TYR LEU HIS GLY MSE ILE ASP ASP PHE ARG ILE PHE ASP SEQRES 17 A 227 ARG ALA LEU SER ALA ASP GLU ILE LYS THR LEU ALA SER SEQRES 18 A 227 VAL ALA THR ARG VAL ASN MODRES 4QVS MSE A 227 MET SELENOMETHIONINE MODRES 4QVS MSE A 317 MET SELENOMETHIONINE MODRES 4QVS MSE A 331 MET SELENOMETHIONINE MODRES 4QVS MSE A 417 MET SELENOMETHIONINE HET MSE A 227 8 HET MSE A 317 8 HET MSE A 331 8 HET MSE A 417 8 HET CL A 501 1 HET NA A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 NA NA 1+ FORMUL 4 HOH *44(H2 O) HELIX 1 1 GLY A 335 GLU A 339 5 5 HELIX 2 2 LEU A 388 SER A 392 5 5 HELIX 3 3 SER A 429 ALA A 437 1 9 SHEET 1 A 3 GLU A 238 PHE A 239 0 SHEET 2 A 3 ALA A 249 TYR A 252 -1 O ALA A 249 N PHE A 239 SHEET 3 A 3 TYR A 274 ALA A 276 -1 O ALA A 276 N VAL A 250 SHEET 1 B 2 VAL A 257 PRO A 259 0 SHEET 2 B 2 ASN A 264 VAL A 266 -1 O SER A 265 N VAL A 258 SHEET 1 C 4 GLN A 302 PHE A 308 0 SHEET 2 C 4 TYR A 316 ALA A 321 -1 O LEU A 319 N ILE A 304 SHEET 3 C 4 ILE A 327 THR A 332 -1 O LYS A 328 N THR A 320 SHEET 4 C 4 LYS A 340 THR A 343 -1 O LYS A 340 N MSE A 331 SHEET 1 D 3 VAL A 356 SER A 361 0 SHEET 2 D 3 THR A 364 ILE A 369 -1 O THR A 364 N SER A 361 SHEET 3 D 3 GLU A 372 ASN A 377 -1 O VAL A 374 N LEU A 367 LINK C TYR A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N PHE A 228 1555 1555 1.34 LINK C TYR A 316 N MSE A 317 1555 1555 1.34 LINK C MSE A 317 N ARG A 318 1555 1555 1.33 LINK C ALA A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N THR A 332 1555 1555 1.34 LINK C GLY A 416 N MSE A 417 1555 1555 1.34 LINK C MSE A 417 N ILE A 418 1555 1555 1.34 LINK NA NA A 502 O HOH A 644 1555 1555 2.02 LINK O ASN A 264 NA NA A 502 1555 1555 2.15 LINK O MSE A 227 NA NA A 502 1555 1555 2.30 LINK O ASN A 262 NA NA A 502 1555 1555 2.38 LINK OD1 ASP A 229 NA NA A 502 1555 1555 2.50 CISPEP 1 THR A 386 PHE A 387 0 -1.77 SITE 1 AC1 3 ASP A 229 GLU A 230 TYR A 242 SITE 1 AC2 6 MSE A 227 ASP A 229 ASN A 262 ASN A 264 SITE 2 AC2 6 ASP A 419 HOH A 644 CRYST1 65.958 74.813 98.398 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010163 0.00000