HEADER UNKNOWN FUNCTION 23-JUL-14 4QY4 TITLE CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN SMARCA2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMARCA2 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMARCA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SMARCA2 BAF190B BRM SNF2A SNF2L2, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,P.SAVITSKY,G.NUNEZ-ALONSO,M.FONSECA,T.KROJER, AUTHOR 2 P.FILIPPAKOPOULOS,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 3 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 20-SEP-23 4QY4 1 REMARK SEQADV LINK REVDAT 1 27-AUG-14 4QY4 0 JRNL AUTH C.TALLANT,P.SAVITSKY,G.NUNEZ-ALONSO,M.FONSECA,T.KROJER, JRNL AUTH 2 P.FILIPPAKOPOULOS,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 3 C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN SMARCA2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1415 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : -2.36000 REMARK 3 B12 (A**2) : 0.36000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.877 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2690 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2680 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3607 ; 1.600 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6171 ; 0.840 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;33.008 ;24.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;15.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2969 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1289 ; 1.473 ; 1.827 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1288 ; 1.472 ; 1.825 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1606 ; 2.262 ; 2.725 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1607 ; 2.262 ; 2.727 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1401 ; 1.941 ; 2.080 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1402 ; 1.940 ; 2.082 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2002 ; 3.162 ; 3.016 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3177 ; 5.054 ;14.523 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3155 ; 5.010 ;14.412 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1381 A 1490 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0474 20.4076 18.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.1337 REMARK 3 T33: 0.1075 T12: 0.0543 REMARK 3 T13: 0.0349 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.4344 L22: 0.8572 REMARK 3 L33: 1.9281 L12: -0.1047 REMARK 3 L13: -0.0256 L23: 0.0553 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.1666 S13: -0.0347 REMARK 3 S21: 0.0862 S22: -0.0463 S23: -0.1240 REMARK 3 S31: -0.1494 S32: -0.1086 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1383 B 1490 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8003 4.4337 26.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1541 REMARK 3 T33: 0.0874 T12: 0.0646 REMARK 3 T13: 0.0481 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.5123 L22: 0.3912 REMARK 3 L33: 1.6202 L12: -0.1368 REMARK 3 L13: 0.0483 L23: 0.2357 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.0113 S13: -0.0213 REMARK 3 S21: 0.0465 S22: -0.0759 S23: 0.0097 REMARK 3 S31: 0.0061 S32: -0.1593 S33: 0.0532 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1383 C 1487 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7388 31.5808 3.6272 REMARK 3 T TENSOR REMARK 3 T11: 0.1681 T22: 0.4316 REMARK 3 T33: 0.1677 T12: 0.1634 REMARK 3 T13: -0.1360 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.9623 L22: 1.3860 REMARK 3 L33: 2.0890 L12: 0.9918 REMARK 3 L13: 0.3276 L23: 1.1729 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.4323 S13: 0.1759 REMARK 3 S21: 0.2802 S22: 0.5225 S23: -0.0406 REMARK 3 S31: 0.5207 S32: 0.3587 S33: -0.5070 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 55.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.21900 REMARK 200 R SYM (I) : 0.14100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 3.29000 REMARK 200 R SYM FOR SHELL (I) : 1.32400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE OF 2GRC, 2OSS, 3D7C, 2OUO, 2OO1, 3DAI, REMARK 200 3DWY. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6K, 8% ETHYLENE GLYCOL, 0.01M REMARK 280 ZNCL2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.70567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.41133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1371 REMARK 465 MET A 1372 REMARK 465 ALA A 1373 REMARK 465 GLU A 1374 REMARK 465 LYS A 1375 REMARK 465 LEU A 1376 REMARK 465 SER A 1377 REMARK 465 PRO A 1378 REMARK 465 ASN A 1379 REMARK 465 PRO A 1380 REMARK 465 GLU A 1491 REMARK 465 GLU A 1492 REMARK 465 GLU A 1493 REMARK 465 SER B 1371 REMARK 465 MET B 1372 REMARK 465 ALA B 1373 REMARK 465 GLU B 1374 REMARK 465 LYS B 1375 REMARK 465 LEU B 1376 REMARK 465 SER B 1377 REMARK 465 PRO B 1378 REMARK 465 ASN B 1379 REMARK 465 PRO B 1380 REMARK 465 PRO B 1381 REMARK 465 LYS B 1382 REMARK 465 GLU B 1491 REMARK 465 GLU B 1492 REMARK 465 GLU B 1493 REMARK 465 SER C 1371 REMARK 465 MET C 1372 REMARK 465 ALA C 1373 REMARK 465 GLU C 1374 REMARK 465 LYS C 1375 REMARK 465 LEU C 1376 REMARK 465 SER C 1377 REMARK 465 PRO C 1378 REMARK 465 ASN C 1379 REMARK 465 PRO C 1380 REMARK 465 PRO C 1381 REMARK 465 LYS C 1382 REMARK 465 ILE C 1488 REMARK 465 ALA C 1489 REMARK 465 LYS C 1490 REMARK 465 GLU C 1491 REMARK 465 GLU C 1492 REMARK 465 GLU C 1493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1385 CD CE NZ REMARK 470 GLU A1420 CD OE1 OE2 REMARK 470 LYS B1385 CD CE NZ REMARK 470 LYS C1385 CD CE NZ REMARK 470 ARG C1426 CD NE CZ NH1 NH2 REMARK 470 LYS C1427 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1601 O HOH C 1621 2665 1.33 REMARK 500 ZN ZN A 1501 O HOH A 1632 3664 1.46 REMARK 500 NE2 HIS A 1441 O HOH A 1632 3664 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C1454 CG - SD - CE ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A1441 35.59 70.78 REMARK 500 SER C1401 5.14 -65.33 REMARK 500 GLN C1486 24.90 -59.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1441 NE2 REMARK 620 2 HOH A1625 O 91.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C1441 NE2 REMARK 620 2 HOH C1601 O 63.3 REMARK 620 3 HOH C1606 O 93.2 155.7 REMARK 620 4 HOH C1615 O 134.1 123.7 76.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1501 DBREF 4QY4 A 1373 1493 UNP Q8N9Q1 Q8N9Q1_HUMAN 79 199 DBREF 4QY4 B 1373 1493 UNP Q8N9Q1 Q8N9Q1_HUMAN 79 199 DBREF 4QY4 C 1373 1493 UNP Q8N9Q1 Q8N9Q1_HUMAN 79 199 SEQADV 4QY4 SER A 1371 UNP Q8N9Q1 EXPRESSION TAG SEQADV 4QY4 MET A 1372 UNP Q8N9Q1 EXPRESSION TAG SEQADV 4QY4 SER B 1371 UNP Q8N9Q1 EXPRESSION TAG SEQADV 4QY4 MET B 1372 UNP Q8N9Q1 EXPRESSION TAG SEQADV 4QY4 SER C 1371 UNP Q8N9Q1 EXPRESSION TAG SEQADV 4QY4 MET C 1372 UNP Q8N9Q1 EXPRESSION TAG SEQRES 1 A 123 SER MET ALA GLU LYS LEU SER PRO ASN PRO PRO LYS LEU SEQRES 2 A 123 THR LYS GLN MET ASN ALA ILE ILE ASP THR VAL ILE ASN SEQRES 3 A 123 TYR LYS ASP SER SER GLY ARG GLN LEU SER GLU VAL PHE SEQRES 4 A 123 ILE GLN LEU PRO SER ARG LYS GLU LEU PRO GLU TYR TYR SEQRES 5 A 123 GLU LEU ILE ARG LYS PRO VAL ASP PHE LYS LYS ILE LYS SEQRES 6 A 123 GLU ARG ILE ARG ASN HIS LYS TYR ARG SER LEU GLY ASP SEQRES 7 A 123 LEU GLU LYS ASP VAL MET LEU LEU CYS HIS ASN ALA GLN SEQRES 8 A 123 THR PHE ASN LEU GLU GLY SER GLN ILE TYR GLU ASP SER SEQRES 9 A 123 ILE VAL LEU GLN SER VAL PHE LYS SER ALA ARG GLN LYS SEQRES 10 A 123 ILE ALA LYS GLU GLU GLU SEQRES 1 B 123 SER MET ALA GLU LYS LEU SER PRO ASN PRO PRO LYS LEU SEQRES 2 B 123 THR LYS GLN MET ASN ALA ILE ILE ASP THR VAL ILE ASN SEQRES 3 B 123 TYR LYS ASP SER SER GLY ARG GLN LEU SER GLU VAL PHE SEQRES 4 B 123 ILE GLN LEU PRO SER ARG LYS GLU LEU PRO GLU TYR TYR SEQRES 5 B 123 GLU LEU ILE ARG LYS PRO VAL ASP PHE LYS LYS ILE LYS SEQRES 6 B 123 GLU ARG ILE ARG ASN HIS LYS TYR ARG SER LEU GLY ASP SEQRES 7 B 123 LEU GLU LYS ASP VAL MET LEU LEU CYS HIS ASN ALA GLN SEQRES 8 B 123 THR PHE ASN LEU GLU GLY SER GLN ILE TYR GLU ASP SER SEQRES 9 B 123 ILE VAL LEU GLN SER VAL PHE LYS SER ALA ARG GLN LYS SEQRES 10 B 123 ILE ALA LYS GLU GLU GLU SEQRES 1 C 123 SER MET ALA GLU LYS LEU SER PRO ASN PRO PRO LYS LEU SEQRES 2 C 123 THR LYS GLN MET ASN ALA ILE ILE ASP THR VAL ILE ASN SEQRES 3 C 123 TYR LYS ASP SER SER GLY ARG GLN LEU SER GLU VAL PHE SEQRES 4 C 123 ILE GLN LEU PRO SER ARG LYS GLU LEU PRO GLU TYR TYR SEQRES 5 C 123 GLU LEU ILE ARG LYS PRO VAL ASP PHE LYS LYS ILE LYS SEQRES 6 C 123 GLU ARG ILE ARG ASN HIS LYS TYR ARG SER LEU GLY ASP SEQRES 7 C 123 LEU GLU LYS ASP VAL MET LEU LEU CYS HIS ASN ALA GLN SEQRES 8 C 123 THR PHE ASN LEU GLU GLY SER GLN ILE TYR GLU ASP SER SEQRES 9 C 123 ILE VAL LEU GLN SER VAL PHE LYS SER ALA ARG GLN LYS SEQRES 10 C 123 ILE ALA LYS GLU GLU GLU HET ZN A1501 1 HET ZN B1501 1 HET ZN C1501 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *98(H2 O) HELIX 1 1 PRO A 1381 TYR A 1397 1 17 HELIX 2 2 SER A 1406 ILE A 1410 5 5 HELIX 3 3 LEU A 1418 ILE A 1425 1 8 HELIX 4 4 ASP A 1430 ASN A 1440 1 11 HELIX 5 5 SER A 1445 ASN A 1464 1 20 HELIX 6 6 SER A 1468 ALA A 1489 1 22 HELIX 7 7 THR B 1384 TYR B 1397 1 14 HELIX 8 8 GLN B 1404 ILE B 1410 5 7 HELIX 9 9 LEU B 1418 ILE B 1425 1 8 HELIX 10 10 ASP B 1430 ASN B 1440 1 11 HELIX 11 11 SER B 1445 ASN B 1464 1 20 HELIX 12 12 SER B 1468 LYS B 1490 1 23 HELIX 13 13 THR C 1384 TYR C 1397 1 14 HELIX 14 14 GLN C 1404 ILE C 1410 5 7 HELIX 15 15 LEU C 1418 ILE C 1425 1 8 HELIX 16 16 ASP C 1430 ASN C 1440 1 11 HELIX 17 17 SER C 1445 ASN C 1464 1 20 HELIX 18 18 SER C 1468 GLN C 1486 1 19 LINK NE2 HIS A1441 ZN ZN A1501 1555 1555 2.22 LINK ZN ZN A1501 O HOH A1625 1555 1555 2.38 LINK NE2 HIS B1441 ZN ZN B1501 1555 1555 2.12 LINK NE2 HIS C1441 ZN ZN C1501 1555 1555 2.31 LINK ZN ZN C1501 O HOH C1601 1555 1555 1.83 LINK ZN ZN C1501 O HOH C1606 1555 1555 2.10 LINK ZN ZN C1501 O HOH C1615 1555 1555 2.14 SITE 1 AC1 4 HIS A1441 HIS A1458 HOH A1625 HOH A1632 SITE 1 AC2 3 HIS B1441 HIS B1458 HOH B1631 SITE 1 AC3 5 HIS C1441 HIS C1458 HOH C1601 HOH C1606 SITE 2 AC3 5 HOH C1615 CRYST1 64.346 64.346 89.117 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015541 0.008973 0.000000 0.00000 SCALE2 0.000000 0.017945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011221 0.00000