HEADER TRANSPORT PROTEIN 24-JUL-14 4QYA TITLE CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN VARIANT V30M IN COMPLEX WITH TITLE 2 LUTEOLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-147; COMPND 5 SYNONYM: ATTR, PREALBUMIN, TBPA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS AMYLOID FIBRILS, TRANSPORT PROTEIN, VITAMIN A, RETINOL-BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BEGUM,A.OLOFSSON,A.E.SAUER-ERIKSSON REVDAT 4 28-FEB-24 4QYA 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4QYA 1 REMARK REVDAT 2 17-JUN-15 4QYA 1 JRNL REVDAT 1 03-JUN-15 4QYA 0 JRNL AUTH I.IAKOVLEVA,A.BEGUM,M.POKRZYWA,M.WALFRIDSSON, JRNL AUTH 2 A.E.SAUER-ERIKSSON,A.OLOFSSON JRNL TITL THE FLAVONOID LUTEOLIN, BUT NOT LUTEOLIN-7-O-GLUCOSIDE, JRNL TITL 2 PREVENTS A TRANSTHYRETIN MEDIATED TOXIC RESPONSE. JRNL REF PLOS ONE V. 10 28222 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26020516 JRNL DOI 10.1371/JOURNAL.PONE.0128222 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.8083 - 3.6571 0.99 2693 138 0.1539 0.1785 REMARK 3 2 3.6571 - 2.9044 1.00 2558 134 0.1512 0.1714 REMARK 3 3 2.9044 - 2.5377 1.00 2511 156 0.1686 0.2056 REMARK 3 4 2.5377 - 2.3059 1.00 2520 153 0.1691 0.2172 REMARK 3 5 2.3059 - 2.1408 1.00 2482 132 0.1533 0.1806 REMARK 3 6 2.1408 - 2.0146 1.00 2523 123 0.1626 0.2066 REMARK 3 7 2.0146 - 1.9138 1.00 2501 132 0.1642 0.2421 REMARK 3 8 1.9138 - 1.8305 1.00 2475 123 0.1731 0.2124 REMARK 3 9 1.8305 - 1.7600 1.00 2492 138 0.1875 0.2448 REMARK 3 10 1.7600 - 1.7000 0.96 2388 109 0.2106 0.2383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2001 REMARK 3 ANGLE : 1.102 2757 REMARK 3 CHIRALITY : 0.074 302 REMARK 3 PLANARITY : 0.007 356 REMARK 3 DIHEDRAL : 14.765 715 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1323 -8.0924 -1.6656 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1380 REMARK 3 T33: 0.1181 T12: 0.0225 REMARK 3 T13: -0.0232 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 7.0657 L22: 3.7421 REMARK 3 L33: 3.3019 L12: -4.1960 REMARK 3 L13: 4.1027 L23: -2.9093 REMARK 3 S TENSOR REMARK 3 S11: -0.2553 S12: -0.7269 S13: 0.1487 REMARK 3 S21: 0.1479 S22: 0.1438 S23: -0.1433 REMARK 3 S31: -0.1157 S32: -0.1826 S33: 0.1025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4553 -4.2713 -5.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.0873 REMARK 3 T33: 0.1532 T12: 0.0125 REMARK 3 T13: 0.0138 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.2520 L22: 2.5517 REMARK 3 L33: 1.0903 L12: -0.5707 REMARK 3 L13: -0.0874 L23: -0.9678 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: -0.0639 S13: -0.0701 REMARK 3 S21: 0.1352 S22: -0.0052 S23: 0.3957 REMARK 3 S31: 0.0567 S32: -0.0297 S33: -0.0777 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7316 -24.3437 -7.8981 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.0907 REMARK 3 T33: 0.1662 T12: 0.0138 REMARK 3 T13: 0.0129 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.2543 L22: 3.0851 REMARK 3 L33: 1.0924 L12: -1.9721 REMARK 3 L13: 0.3338 L23: 0.3168 REMARK 3 S TENSOR REMARK 3 S11: 0.1818 S12: 0.0269 S13: -0.1127 REMARK 3 S21: -0.2804 S22: 0.0229 S23: -0.2494 REMARK 3 S31: 0.1636 S32: 0.1303 S33: -0.0717 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2121 -23.4824 -4.0317 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.0890 REMARK 3 T33: 0.1635 T12: -0.0050 REMARK 3 T13: 0.0083 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.7379 L22: 2.8435 REMARK 3 L33: 2.9934 L12: -0.5475 REMARK 3 L13: -0.9404 L23: 0.9322 REMARK 3 S TENSOR REMARK 3 S11: -0.2535 S12: 0.0197 S13: -0.5699 REMARK 3 S21: 0.0959 S22: 0.0185 S23: 0.2315 REMARK 3 S31: 0.2506 S32: 0.0026 S33: 0.1377 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6185 -15.9191 -0.2347 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.0891 REMARK 3 T33: 0.1002 T12: 0.0098 REMARK 3 T13: -0.0044 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.2559 L22: 1.1549 REMARK 3 L33: 0.7460 L12: -0.9150 REMARK 3 L13: 0.5836 L23: -0.4830 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: -0.1814 S13: -0.0726 REMARK 3 S21: 0.1591 S22: 0.0461 S23: 0.0097 REMARK 3 S31: -0.0510 S32: 0.0797 S33: 0.0542 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5723 -12.0852 -11.4091 REMARK 3 T TENSOR REMARK 3 T11: -0.0360 T22: 0.1234 REMARK 3 T33: -0.1898 T12: -0.2851 REMARK 3 T13: -0.2362 T23: -0.3853 REMARK 3 L TENSOR REMARK 3 L11: 2.8112 L22: 1.9499 REMARK 3 L33: 1.5442 L12: -0.5244 REMARK 3 L13: -1.3445 L23: 0.8521 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.5263 S13: -0.5607 REMARK 3 S21: 0.3586 S22: -0.7984 S23: 0.4934 REMARK 3 S31: 0.3505 S32: -1.2530 S33: -0.4169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6934 -13.3276 -17.1776 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1784 REMARK 3 T33: 0.1222 T12: 0.0256 REMARK 3 T13: -0.0418 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 2.7793 L22: 3.0729 REMARK 3 L33: 2.0337 L12: 0.1030 REMARK 3 L13: 0.1471 L23: -1.8727 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.5231 S13: 0.1500 REMARK 3 S21: -0.3057 S22: -0.2245 S23: -0.0121 REMARK 3 S31: 0.1390 S32: -0.5643 S33: 0.0440 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0649 -15.2397 -10.2644 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.1174 REMARK 3 T33: 0.0746 T12: 0.0016 REMARK 3 T13: -0.0259 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 4.8565 L22: 2.6569 REMARK 3 L33: 2.7316 L12: -2.9812 REMARK 3 L13: 2.4033 L23: -1.8505 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.2888 S13: -0.2679 REMARK 3 S21: -0.0494 S22: 0.1242 S23: -0.0047 REMARK 3 S31: 0.2226 S32: -0.2498 S33: -0.1238 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9663 -13.5396 -1.0759 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.2291 REMARK 3 T33: 0.2456 T12: -0.0113 REMARK 3 T13: -0.0736 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 8.6240 L22: 8.8565 REMARK 3 L33: 2.5944 L12: 0.4379 REMARK 3 L13: 1.3137 L23: 1.2994 REMARK 3 S TENSOR REMARK 3 S11: -0.0860 S12: 0.4738 S13: 0.0860 REMARK 3 S21: 0.0828 S22: 0.6844 S23: -0.8583 REMARK 3 S31: 0.0931 S32: 0.5370 S33: 0.0215 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4712 -7.0496 -5.6122 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1090 REMARK 3 T33: 0.0862 T12: 0.0125 REMARK 3 T13: -0.0360 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.4500 L22: 1.0587 REMARK 3 L33: 0.9553 L12: -1.1407 REMARK 3 L13: 1.8667 L23: -0.6383 REMARK 3 S TENSOR REMARK 3 S11: -0.0503 S12: -0.2246 S13: -0.0682 REMARK 3 S21: 0.0430 S22: 0.0359 S23: -0.0801 REMARK 3 S31: -0.0985 S32: -0.0395 S33: 0.0752 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5398 -5.9140 -9.4483 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.1106 REMARK 3 T33: 0.0910 T12: 0.0044 REMARK 3 T13: -0.0421 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 5.0269 L22: 1.2908 REMARK 3 L33: 2.4065 L12: 0.2976 REMARK 3 L13: 2.9320 L23: 0.4256 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: -0.3409 S13: 0.1837 REMARK 3 S21: 0.1478 S22: -0.0954 S23: -0.1413 REMARK 3 S31: -0.0067 S32: -0.2012 S33: 0.0620 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4775 -7.9026 -30.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.1418 REMARK 3 T33: 0.1137 T12: 0.0001 REMARK 3 T13: -0.0310 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 4.6928 L22: 4.0847 REMARK 3 L33: 2.7860 L12: 3.7934 REMARK 3 L13: 3.5985 L23: 2.9930 REMARK 3 S TENSOR REMARK 3 S11: -0.2734 S12: 0.5492 S13: 0.2331 REMARK 3 S21: -0.3825 S22: 0.0702 S23: 0.3386 REMARK 3 S31: -0.2424 S32: 0.0782 S33: 0.0908 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5896 -3.2002 -26.9671 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1259 REMARK 3 T33: 0.1434 T12: -0.0081 REMARK 3 T13: 0.0212 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.1671 L22: 1.8577 REMARK 3 L33: 0.9736 L12: -0.2057 REMARK 3 L13: -0.3396 L23: 0.9214 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.0222 S13: -0.0590 REMARK 3 S21: -0.1751 S22: -0.0387 S23: -0.3321 REMARK 3 S31: -0.0687 S32: 0.0103 S33: -0.1061 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7785 -24.6525 -23.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1149 REMARK 3 T33: 0.2022 T12: 0.0015 REMARK 3 T13: 0.0292 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.6710 L22: 6.2091 REMARK 3 L33: 2.5472 L12: 3.6315 REMARK 3 L13: -1.4310 L23: -2.0647 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: -0.1627 S13: -0.2838 REMARK 3 S21: 0.2011 S22: 0.0958 S23: 0.2255 REMARK 3 S31: 0.3113 S32: -0.0696 S33: -0.0130 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7244 -14.5692 -31.6747 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1272 REMARK 3 T33: 0.1089 T12: 0.0129 REMARK 3 T13: 0.0034 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.0543 L22: 2.3231 REMARK 3 L33: 2.0871 L12: 0.6673 REMARK 3 L13: -0.1232 L23: 0.0222 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: 0.1237 S13: -0.1213 REMARK 3 S21: -0.1700 S22: 0.0223 S23: -0.1379 REMARK 3 S31: -0.1120 S32: -0.0169 S33: 0.0872 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7932 -19.4878 -29.6614 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.1055 REMARK 3 T33: 0.1433 T12: -0.0007 REMARK 3 T13: -0.0110 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.6312 L22: 1.9877 REMARK 3 L33: 0.9143 L12: 1.4115 REMARK 3 L13: 0.2014 L23: 0.7131 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0018 S13: -0.2769 REMARK 3 S21: 0.0348 S22: 0.0121 S23: -0.0928 REMARK 3 S31: 0.0765 S32: -0.1246 S33: -0.0003 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2500 -8.9165 -20.4342 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0940 REMARK 3 T33: 0.2006 T12: 0.0123 REMARK 3 T13: -0.0501 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 3.8864 L22: 2.0761 REMARK 3 L33: 2.6809 L12: -0.4276 REMARK 3 L13: -0.4925 L23: 0.9910 REMARK 3 S TENSOR REMARK 3 S11: 0.1900 S12: -0.0349 S13: -0.1545 REMARK 3 S21: 0.0696 S22: -0.1397 S23: -0.6924 REMARK 3 S31: 0.1425 S32: 0.5018 S33: 0.0363 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8844 -10.2218 -14.1825 REMARK 3 T TENSOR REMARK 3 T11: 0.1632 T22: 0.1190 REMARK 3 T33: 0.2105 T12: -0.0266 REMARK 3 T13: -0.0912 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.1651 L22: 1.4081 REMARK 3 L33: 2.4042 L12: 0.5096 REMARK 3 L13: -1.7346 L23: -0.2212 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: 0.1930 S13: 0.3857 REMARK 3 S21: 0.4774 S22: 0.0625 S23: -0.3415 REMARK 3 S31: 0.0876 S32: 0.0763 S33: -0.0135 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9112 -16.0103 -21.5637 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.1213 REMARK 3 T33: 0.1119 T12: -0.0181 REMARK 3 T13: -0.0164 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.9469 L22: 2.2565 REMARK 3 L33: 1.7697 L12: 2.2761 REMARK 3 L13: 0.7940 L23: 0.7639 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.1778 S13: -0.1997 REMARK 3 S21: -0.1052 S22: 0.0647 S23: -0.1039 REMARK 3 S31: -0.1669 S32: -0.0192 S33: 0.0028 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 98 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9643 -13.7847 -31.3275 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.4435 REMARK 3 T33: 0.4435 T12: 0.0225 REMARK 3 T13: -0.1149 T23: -0.1490 REMARK 3 L TENSOR REMARK 3 L11: 4.4468 L22: 7.9062 REMARK 3 L33: 3.4043 L12: -0.1214 REMARK 3 L13: 0.0570 L23: 1.3728 REMARK 3 S TENSOR REMARK 3 S11: -0.0860 S12: -0.1522 S13: 0.5326 REMARK 3 S21: -0.3385 S22: 0.2528 S23: 0.5933 REMARK 3 S31: -0.3691 S32: -0.3961 S33: 0.0895 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2871 -6.9874 -26.2872 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1253 REMARK 3 T33: 0.0875 T12: -0.0130 REMARK 3 T13: -0.0265 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.7997 L22: 1.5092 REMARK 3 L33: 2.0365 L12: 1.2569 REMARK 3 L13: 2.3450 L23: 1.2278 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.0919 S13: -0.0323 REMARK 3 S21: -0.2259 S22: -0.0572 S23: 0.1200 REMARK 3 S31: -0.1395 S32: -0.2547 S33: 0.0820 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5532 -5.6965 -22.0652 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.1076 REMARK 3 T33: 0.0762 T12: 0.0291 REMARK 3 T13: -0.0689 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 5.4578 L22: 1.8119 REMARK 3 L33: 3.0424 L12: 0.3393 REMARK 3 L13: 2.9658 L23: 0.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.3110 S13: 0.0218 REMARK 3 S21: -0.3300 S22: -0.1232 S23: 0.0733 REMARK 3 S31: -0.1921 S32: 0.0744 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : TRIODE ELECTROSTATIC FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLREP REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: V30M-TTR CONCENTRATION WAS 5 MG/ML IN REMARK 280 10 MM SODIUMPHOSPHATE, PH 7.6, 100 MM POTASSIUMCLORIDE. V30M-TTR REMARK 280 WAS CO-CRYSTALLIZED AT ROOM TEMPERATURE WITH 5 MOLAR EXCESS OF REMARK 280 LUTEOLIN IN 3.5% V/V GLYCEROL AND 1.3-1.6 M SODIUM CITRATE AT PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.44700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.92700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.44700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.92700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -42.89400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C4 LU2 A 201 LIES ON A SPECIAL POSITION. REMARK 375 O6 LU2 A 201 LIES ON A SPECIAL POSITION. REMARK 375 C13 LU2 A 201 LIES ON A SPECIAL POSITION. REMARK 375 C4 LU2 B 201 LIES ON A SPECIAL POSITION. REMARK 375 O6 LU2 B 201 LIES ON A SPECIAL POSITION. REMARK 375 C9 LU2 B 201 LIES ON A SPECIAL POSITION. REMARK 375 C10 LU2 B 201 LIES ON A SPECIAL POSITION. REMARK 375 C13 LU2 B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 376 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 364 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 44 -54.16 -127.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 O REMARK 620 2 HOH A 333 O 92.3 REMARK 620 3 HOH A 344 O 78.4 81.2 REMARK 620 4 HOH A 391 O 86.8 83.0 157.9 REMARK 620 5 HOH A 398 O 154.2 113.4 106.8 93.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU2 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LU2 B 201 DBREF 4QYA A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 4QYA B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 4QYA MET A 30 UNP P02766 VAL 50 ENGINEERED MUTATION SEQADV 4QYA MET B 30 UNP P02766 VAL 50 ENGINEERED MUTATION SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA MET HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA MET HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET LU2 A 201 21 HET NA A 202 1 HET LU2 B 201 21 HETNAM LU2 2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-CHROMEN-4-ONE HETNAM NA SODIUM ION HETSYN LU2 LUTEOLIN FORMUL 3 LU2 2(C15 H10 O6) FORMUL 4 NA NA 1+ FORMUL 6 HOH *268(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 SHEET 1 A 8 SER A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 A 8 SER A 115 THR A 123 -1 O THR A 123 N ARG A 104 SHEET 5 A 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 ARG B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 A 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 A 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 B 8 GLU A 54 LEU A 55 0 SHEET 2 B 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 B 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 B 8 SER A 115 THR A 123 -1 O THR A 123 N ARG A 104 SHEET 5 B 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 B 8 ARG B 104 SER B 112 -1 N ALA B 108 O THR B 119 SHEET 7 B 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 B 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 C 8 TRP A 41 LYS A 48 0 SHEET 2 C 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 C 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 C 8 HIS A 88 ALA A 97 -1 O PHE A 95 N TYR A 69 SHEET 5 C 8 HIS B 88 ALA B 97 -1 O VAL B 94 N GLU A 89 SHEET 6 C 8 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 7 C 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 C 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 LINK O ASP A 99 NA NA A 202 1555 1555 2.52 LINK NA NA A 202 O HOH A 333 1555 1555 2.21 LINK NA NA A 202 O HOH A 344 1555 1555 2.68 LINK NA NA A 202 O HOH A 391 1555 1555 2.19 LINK NA NA A 202 O HOH A 398 1555 1555 2.28 SITE 1 AC1 9 LYS A 15 LEU A 17 ALA A 108 LEU A 110 SITE 2 AC1 9 SER A 117 THR A 118 THR A 119 HOH A 376 SITE 3 AC1 9 HOH A 419 SITE 1 AC2 5 ASP A 99 HOH A 333 HOH A 344 HOH A 391 SITE 2 AC2 5 HOH A 398 SITE 1 AC3 8 LYS B 15 ALA B 108 LEU B 110 SER B 117 SITE 2 AC3 8 THR B 118 THR B 119 HOH B 364 HOH B 400 CRYST1 42.894 85.854 63.685 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015702 0.00000