HEADER PROTEIN BINDING 03-AUG-14 4R12 TITLE CRYSTAL STRUCTURE OF THE GAMMA-SECRETASE COMPONENT NICASTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-611; COMPND 5 SYNONYM: NICASTRIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM PURPUREUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 5786; SOURCE 5 GENE: DICPUDRAFT_96800; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS ALPHA/BETA, NICASTRIN, PUTATIVE SUBSTRATE-RECRUITING COMPONENT, KEYWDS 2 GAMMA-SECRETASE COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.XIE,C.YAN,R.ZHOU,Y.ZHAO,L.SUN,G.YANG,P.LU,D.MA,Y.SHI REVDAT 5 13-NOV-24 4R12 1 REMARK REVDAT 4 08-NOV-23 4R12 1 REMARK REVDAT 3 24-AUG-22 4R12 1 JRNL HETSYN REVDAT 2 29-JUL-20 4R12 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 17-SEP-14 4R12 0 JRNL AUTH T.XIE,C.YAN,R.ZHOU,Y.ZHAO,L.SUN,G.YANG,P.LU,D.MA,Y.SHI JRNL TITL CRYSTAL STRUCTURE OF THE GAMMA-SECRETASE COMPONENT JRNL TITL 2 NICASTRIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 13349 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25197054 JRNL DOI 10.1073/PNAS.1414837111 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1690) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0821 - 5.2887 0.97 2904 167 0.1776 0.2015 REMARK 3 2 5.2887 - 4.1999 0.99 2749 144 0.1471 0.1537 REMARK 3 3 4.1999 - 3.6696 1.00 2731 147 0.1640 0.1804 REMARK 3 4 3.6696 - 3.3343 1.00 2719 137 0.1803 0.1998 REMARK 3 5 3.3343 - 3.0955 1.00 2691 142 0.1896 0.2188 REMARK 3 6 3.0955 - 2.9131 1.00 2706 147 0.1909 0.1974 REMARK 3 7 2.9131 - 2.7672 1.00 2676 130 0.1917 0.2704 REMARK 3 8 2.7672 - 2.6468 1.00 2651 156 0.1985 0.2378 REMARK 3 9 2.6468 - 2.5449 1.00 2638 158 0.1918 0.2180 REMARK 3 10 2.5449 - 2.4571 1.00 2667 129 0.1848 0.2159 REMARK 3 11 2.4571 - 2.3803 1.00 2656 131 0.1854 0.2469 REMARK 3 12 2.3803 - 2.3123 1.00 2641 148 0.1830 0.2105 REMARK 3 13 2.3123 - 2.2514 1.00 2624 133 0.1823 0.2214 REMARK 3 14 2.2514 - 2.1965 1.00 2646 136 0.1854 0.2298 REMARK 3 15 2.1965 - 2.1466 1.00 2637 145 0.1857 0.2263 REMARK 3 16 2.1466 - 2.1009 1.00 2598 142 0.1866 0.2397 REMARK 3 17 2.1009 - 2.0589 1.00 2625 127 0.1869 0.2235 REMARK 3 18 2.0589 - 2.0200 1.00 2656 128 0.2001 0.2342 REMARK 3 19 2.0200 - 1.9840 1.00 2602 134 0.2081 0.1987 REMARK 3 20 1.9840 - 1.9503 1.00 2616 153 0.2133 0.2337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 4793 REMARK 3 ANGLE : 1.298 6520 REMARK 3 CHIRALITY : 0.052 745 REMARK 3 PLANARITY : 0.006 819 REMARK 3 DIHEDRAL : 14.442 1729 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 18.5639 4.6622 24.3317 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.1610 REMARK 3 T33: 0.1836 T12: 0.0544 REMARK 3 T13: -0.0759 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8772 L22: 0.9697 REMARK 3 L33: 0.7913 L12: -0.0566 REMARK 3 L13: -0.1115 L23: -0.0378 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0093 S13: -0.0676 REMARK 3 S21: 0.1201 S22: 0.0108 S23: -0.0262 REMARK 3 S31: 0.0594 S32: 0.0630 S33: -0.0122 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0007 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: 4UPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M SODIUM CHLORIDE, REMARK 280 20%(W/V) PEG 3000, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 172.23750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.79200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.79200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.11875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.79200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.79200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 258.35625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.79200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.79200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.11875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.79200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.79200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 258.35625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 172.23750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 19 REMARK 465 SER A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 THR A 27 REMARK 465 ILE A 28 REMARK 465 SER A 29 REMARK 465 ASP A 30 REMARK 465 ASN A 31 REMARK 465 ILE A 32 REMARK 465 GLY A 606 REMARK 465 ASN A 607 REMARK 465 SER A 608 REMARK 465 THR A 609 REMARK 465 THR A 610 REMARK 465 GLU A 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 96 O5 NAG C 1 1.94 REMARK 500 OE1 GLN A 83 OH TYR A 184 2.04 REMARK 500 O HOH A 1131 O HOH A 1170 2.15 REMARK 500 OE2 GLU A 202 NH1 ARG A 206 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 185 C - N - CD ANGL. DEV. = -25.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 154 32.23 -94.10 REMARK 500 SER A 193 64.59 -158.00 REMARK 500 ILE A 199 -74.05 80.32 REMARK 500 SER A 255 -47.76 -143.89 REMARK 500 TRP A 291 53.10 -119.29 REMARK 500 GLN A 345 90.76 66.29 REMARK 500 TYR A 423 -97.41 -110.37 REMARK 500 ASP A 436 -163.57 -125.23 REMARK 500 SER A 482 -53.49 -135.71 REMARK 500 SER A 505 -151.79 60.48 REMARK 500 SER A 576 -72.86 -67.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 809 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 543 O REMARK 620 2 CYS A 546 O 91.7 REMARK 620 3 SER A 549 O 99.1 82.0 REMARK 620 4 HOH A1177 O 169.9 97.9 79.2 REMARK 620 5 HOH A1213 O 91.5 171.6 105.2 79.5 REMARK 620 6 HOH A1225 O 93.4 75.1 154.2 92.1 96.9 REMARK 620 N 1 2 3 4 5 DBREF 4R12 A 19 611 UNP F0ZBA6 F0ZBA6_DICPU 19 611 SEQRES 1 A 593 ASN SER GLU PRO SER ALA PRO ALA THR ILE SER ASP ASN SEQRES 2 A 593 ILE TYR THR THR LEU TYR SER SER TYR PRO CYS THR LYS SEQRES 3 A 593 ILE MET THR SER ASP GLY GLN PHE GLY CYS SER SER LYS SEQRES 4 A 593 HIS GLY GLY ASN SER GLY ILE LEU TYR LEU ILE ASP ASP SEQRES 5 A 593 ASP GLU SER TYR ASN ASN TYR PHE SER TYR SER GLN GLN SEQRES 6 A 593 LYS ASP ILE ILE VAL VAL LEU ASP THR ASN TYR PHE ASN SEQRES 7 A 593 SER THR SER VAL LEU ASN LEU HIS ASN LYS SER LYS ILE SEQRES 8 A 593 GLU GLY ILE ILE VAL LEU THR ASP THR LYS LYS THR TYR SEQRES 9 A 593 PRO TYR SER PRO ASP SER ARG TYR PRO ASN LYS ILE TYR SEQRES 10 A 593 GLY LEU TYR PRO ASN SER ASN LEU GLU TRP ASN PRO ASN SEQRES 11 A 593 ALA ASP GLY PHE THR TYR PHE SER PHE PRO PHE PRO ILE SEQRES 12 A 593 PHE ALA ILE ASP ASN GLN THR SER VAL ALA ILE ARG ASN SEQRES 13 A 593 VAL SER LYS HIS ASN ARG ASP GLY GLN TYR PRO ALA TRP SEQRES 14 A 593 GLY ALA GLU LEU ASP SER PHE MET GLN GLY ALA ILE ASN SEQRES 15 A 593 SER GLU THR CYS LEU ARG ARG GLY PHE CYS GLU PRO VAL SEQRES 16 A 593 GLY GLY GLN SER ILE TRP SER SER PHE SER SER LYS ILE SEQRES 17 A 593 ASP LYS GLU LYS GLU ILE ILE LEU VAL MET LEU PRO PHE SEQRES 18 A 593 ASP THR THR ALA PHE PHE ARG ASP LEU SER ILE GLY ALA SEQRES 19 A 593 ASP GLN SER SER PHE ALA THR VAL THR LEU LEU SER VAL SEQRES 20 A 593 ILE LYS SER LEU ALA ALA VAL ASP ARG SER SER TRP ASN SEQRES 21 A 593 LYS GLU VAL VAL PHE ALA PHE TRP ASN ALA GLU ARG TRP SEQRES 22 A 593 GLY TYR VAL GLY SER GLU TYR PHE ILE ASN ASP LEU LEU SEQRES 23 A 593 ASN PHE GLN CYS LYS THR TYR ASN SER ASP LYS SER LYS SEQRES 24 A 593 CYS ILE ASP PRO PRO ARG ALA ASP LEU ALA PHE GLN THR SEQRES 25 A 593 GLN ILE ASN PHE THR LYS ILE SER THR ILE ILE GLU LEU SEQRES 26 A 593 ASN GLN ILE GLY ARG ALA GLN LEU ASP LYS ASN LEU GLY SEQRES 27 A 593 LYS TYR SER LEU TYR LEU HIS THR ALA GLY THR LYS THR SEQRES 28 A 593 SER SER VAL THR ASP ILE LEU ASP GLN VAL ALA SER SER SEQRES 29 A 593 TYR GLU ASN SER THR ILE THR PHE LYS PRO THR THR GLN SEQRES 30 A 593 THR GLU LEU PRO PRO SER SER SER MET SER PHE LEU LYS SEQRES 31 A 593 LYS THR ASN LYS ILE PRO VAL VAL VAL ILE THR ASP HIS SEQRES 32 A 593 ASP TYR LYS TYR SER ASN PRO TYR TYR GLY TYR GLU GLN SEQRES 33 A 593 ASP ASP ASN GLU ASN VAL LEU GLY SER THR LEU ASN ASP SEQRES 34 A 593 ILE VAL TYR ILE LEU SER THR PHE ILE ASP ARG ILE ALA SEQRES 35 A 593 GLY GLY ASN ASN ASN ILE THR ILE ASP LYS ASN PHE ILE SEQRES 36 A 593 ASN ILE LEU TYR PRO CYS PHE THR SER SER ILE THR CYS SEQRES 37 A 593 PHE ASN ILE LEU MET LYS THR TYR PRO LEU ASN GLU VAL SEQRES 38 A 593 PRO ASN PHE TYR SER SER VAL PHE GLY THR SER LEU THR SEQRES 39 A 593 THR THR LEU SER PRO TYR GLU THR LYS LEU ILE HIS ARG SEQRES 40 A 593 LEU LEU TYR SER ILE THR GLN TYR ASN SER THR LEU THR SEQRES 41 A 593 ASN CYS THR SER ASP ASN ASP CYS PRO SER SER LEU CYS SEQRES 42 A 593 TYR SER GLY GLN CYS VAL SER SER ASN THR HIS LEU HIS SEQRES 43 A 593 ASN ALA LEU SER LEU GLY PHE ASP PHE ASP THR SER LYS SEQRES 44 A 593 ASN VAL TRP LYS ILE VAL ASN SER SER TYR PRO ILE PHE SEQRES 45 A 593 THR GLU SER ASN TRP ASP TYR THR ALA LEU LYS VAL PHE SEQRES 46 A 593 LYS ILE GLY ASN SER THR THR GLU MODRES 4R12 ASN A 385 ASN GLYCOSYLATION SITE MODRES 4R12 ASN A 333 ASN GLYCOSYLATION SITE MODRES 4R12 ASN A 584 ASN GLYCOSYLATION SITE MODRES 4R12 ASN A 96 ASN GLYCOSYLATION SITE MODRES 4R12 ASN A 166 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 806 14 HET NAG A 807 14 HET NAG A 808 14 HET CA A 809 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 7 CA CA 2+ FORMUL 8 HOH *393(H2 O) HELIX 1 1 ASP A 70 ASN A 76 1 7 HELIX 2 2 THR A 92 PHE A 95 5 4 HELIX 3 3 ASN A 96 ASN A 102 1 7 HELIX 4 4 ASN A 132 GLY A 136 5 5 HELIX 5 5 GLY A 151 TYR A 154 5 4 HELIX 6 6 ASP A 165 ASN A 179 1 15 HELIX 7 7 ASN A 200 GLY A 208 1 9 HELIX 8 8 PHE A 245 SER A 249 5 5 HELIX 9 9 SER A 255 ALA A 271 1 17 HELIX 10 10 VAL A 272 TRP A 277 5 6 HELIX 11 11 ALA A 288 GLY A 292 5 5 HELIX 12 12 TYR A 293 PHE A 306 1 14 HELIX 13 13 LEU A 326 ILE A 332 1 7 HELIX 14 14 ASN A 333 THR A 335 5 3 HELIX 15 15 THR A 369 SER A 381 1 13 HELIX 16 16 SER A 402 LYS A 408 1 7 HELIX 17 17 ASP A 436 VAL A 440 5 5 HELIX 18 18 LEU A 441 SER A 443 5 3 HELIX 19 19 THR A 444 ALA A 460 1 17 HELIX 20 20 ASP A 469 SER A 482 1 14 HELIX 21 21 PHE A 487 MET A 491 5 5 HELIX 22 22 PRO A 517 THR A 531 1 15 HELIX 23 23 SER A 542 CYS A 546 5 5 SHEET 1 A 7 SER A 39 PRO A 41 0 SHEET 2 A 7 ILE A 161 ILE A 164 -1 O ALA A 163 N TYR A 40 SHEET 3 A 7 LYS A 108 VAL A 114 1 N VAL A 114 O PHE A 162 SHEET 4 A 7 ASP A 85 LEU A 90 1 N ILE A 86 O GLU A 110 SHEET 5 A 7 ASN A 61 ILE A 68 1 N TYR A 66 O VAL A 89 SHEET 6 A 7 TRP A 187 ASP A 192 -1 O LEU A 191 N ASN A 61 SHEET 7 A 7 ALA A 599 LYS A 604 -1 O ALA A 599 N ASP A 192 SHEET 1 B 5 SER A 156 PHE A 157 0 SHEET 2 B 5 GLN A 51 CYS A 54 1 N GLY A 53 O PHE A 157 SHEET 3 B 5 LYS A 44 THR A 47 -1 N ILE A 45 O PHE A 52 SHEET 4 B 5 PHE A 590 SER A 593 -1 O THR A 591 N MET A 46 SHEET 5 B 5 CYS A 210 PRO A 212 -1 N GLU A 211 O GLU A 592 SHEET 1 C 3 GLN A 350 ASP A 352 0 SHEET 2 C 3 LYS A 357 ALA A 365 -1 O SER A 359 N GLN A 350 SHEET 3 C 3 ILE A 388 PRO A 392 1 O LYS A 391 N LEU A 362 SHEET 1 D 8 GLN A 350 ASP A 352 0 SHEET 2 D 8 LYS A 357 ALA A 365 -1 O SER A 359 N GLN A 350 SHEET 3 D 8 VAL A 415 THR A 419 -1 O THR A 419 N TYR A 361 SHEET 4 D 8 ILE A 337 LEU A 343 1 N GLU A 342 O ILE A 418 SHEET 5 D 8 ILE A 232 PRO A 238 1 N LEU A 234 O ILE A 341 SHEET 6 D 8 GLU A 280 TRP A 286 1 O GLU A 280 N ILE A 233 SHEET 7 D 8 GLY A 215 SER A 221 -1 N ILE A 218 O PHE A 285 SHEET 8 D 8 ASN A 560 ALA A 566 -1 O HIS A 564 N SER A 217 SHEET 1 E 2 THR A 310 TYR A 311 0 SHEET 2 E 2 CYS A 318 ASP A 320 -1 O ILE A 319 N THR A 310 SHEET 1 F 2 GLY A 508 SER A 510 0 SHEET 2 F 2 THR A 513 THR A 514 -1 O THR A 513 N THR A 509 SHEET 1 G 3 ASN A 534 LEU A 537 0 SHEET 2 G 3 GLN A 555 SER A 558 -1 O SER A 558 N ASN A 534 SHEET 3 G 3 LEU A 550 TYR A 552 -1 N LEU A 550 O VAL A 557 SHEET 1 H 2 PHE A 571 ASP A 574 0 SHEET 2 H 2 VAL A 579 ILE A 582 -1 O LYS A 581 N ASP A 572 SSBOND 1 CYS A 42 CYS A 54 1555 1555 2.07 SSBOND 2 CYS A 204 CYS A 210 1555 1555 2.06 SSBOND 3 CYS A 308 CYS A 318 1555 1555 2.04 SSBOND 4 CYS A 479 CYS A 486 1555 1555 2.06 SSBOND 5 CYS A 540 CYS A 551 1555 1555 2.06 SSBOND 6 CYS A 546 CYS A 556 1555 1555 2.07 LINK ND2 ASN A 96 C1 NAG C 1 1555 1555 1.18 LINK ND2 ASN A 166 C1 NAG A 806 1555 1555 1.68 LINK ND2 ASN A 333 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 385 C1 NAG A 807 1555 1555 1.38 LINK ND2 ASN A 584 C1 NAG A 808 1555 1555 1.70 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.41 LINK O ASP A 543 CA CA A 809 1555 1555 2.37 LINK O CYS A 546 CA CA A 809 1555 1555 2.35 LINK O SER A 549 CA CA A 809 1555 1555 2.51 LINK CA CA A 809 O HOH A1177 1555 1555 2.50 LINK CA CA A 809 O HOH A1213 1555 1555 2.33 LINK CA CA A 809 O HOH A1225 1555 1555 2.53 CISPEP 1 ASP A 320 PRO A 321 0 -4.62 CRYST1 65.584 65.584 344.475 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015248 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002903 0.00000