HEADER CELL INVASION 04-AUG-14 4R1C TITLE CRYSTAL STRUCTURE OF 3D7 STRAIN PLASMODIUM FALCIPARUM AMA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEMBRANE ANTIGEN 1, AMA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 104-438; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: AMA1, PF11_0344; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 KEYWDS PAN FOLD, ERYTHROCYTE INVASION BY MEROZOITES, RON2, MOVING JUNCTION KEYWDS 2 COMPLEX, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR S.S.LIM,R.S.NORTON,S.MCGOWAN REVDAT 2 20-SEP-23 4R1C 1 REMARK REVDAT 1 14-JAN-15 4R1C 0 JRNL AUTH S.S.LIM,W.YANG,B.KRISHNARJUNA,K.KANNAN SIVARAMAN, JRNL AUTH 2 I.R.CHANDRASHEKARAN,I.KASS,C.A.MACRAILD,S.M.DEVINE, JRNL AUTH 3 C.O.DEBONO,R.F.ANDERS,M.J.SCANLON,P.J.SCAMMELLS,R.S.NORTON, JRNL AUTH 4 S.MCGOWAN JRNL TITL STRUCTURE AND DYNAMICS OF APICAL MEMBRANE ANTIGEN 1 FROM JRNL TITL 2 PLASMODIUM FALCIPARUM FVO. JRNL REF BIOCHEMISTRY V. 53 7310 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25360546 JRNL DOI 10.1021/BI5012089 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8630 - 4.8179 1.00 2735 148 0.1888 0.2283 REMARK 3 2 4.8179 - 3.8250 1.00 2679 140 0.1493 0.2161 REMARK 3 3 3.8250 - 3.3417 1.00 2641 150 0.1660 0.2205 REMARK 3 4 3.3417 - 3.0363 1.00 2637 151 0.1839 0.2133 REMARK 3 5 3.0363 - 2.8187 1.00 2640 141 0.1992 0.2681 REMARK 3 6 2.8187 - 2.6526 1.00 2652 123 0.2014 0.2644 REMARK 3 7 2.6526 - 2.5198 1.00 2612 129 0.2179 0.2578 REMARK 3 8 2.5198 - 2.4101 1.00 2651 141 0.2117 0.2587 REMARK 3 9 2.4101 - 2.3173 1.00 2639 133 0.2126 0.3675 REMARK 3 10 2.3173 - 2.2374 0.99 2608 135 0.2218 0.2813 REMARK 3 11 2.2374 - 2.1674 1.00 2616 137 0.2411 0.2989 REMARK 3 12 2.1674 - 2.1055 1.00 2628 134 0.2560 0.2892 REMARK 3 13 2.1055 - 2.0500 0.99 2613 143 0.2729 0.3158 REMARK 3 14 2.0500 - 2.0000 0.99 2575 140 0.3095 0.3342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4368 REMARK 3 ANGLE : 1.075 5919 REMARK 3 CHIRALITY : 0.045 634 REMARK 3 PLANARITY : 0.005 776 REMARK 3 DIHEDRAL : 13.156 1577 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 62.3340 1.8207 40.2767 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.2780 REMARK 3 T33: 0.2504 T12: 0.0140 REMARK 3 T13: -0.0147 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 0.3906 L22: 1.6221 REMARK 3 L33: 1.6555 L12: 0.0128 REMARK 3 L13: 0.1369 L23: 1.1300 REMARK 3 S TENSOR REMARK 3 S11: 0.1156 S12: -0.0702 S13: -0.0514 REMARK 3 S21: -0.0524 S22: -0.2494 S23: 0.2121 REMARK 3 S31: -0.0422 S32: -0.4076 S33: 0.1235 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38986 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 8.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 1Z40 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-15 % (V/V) POLYETHYLENE GLYCOL REMARK 280 3350, 0.02 M MES AND 10 MM MANGANESE CHLORIDE. CRYSTALS WERE REMARK 280 DEHYDRATED OVERNIGHT IN RESERVOIR SOLUTION WITH INCREASED (35%) REMARK 280 (V/V) POLYETHYLENE GLYCOL 3350 BEFORE CRYO-STABILISATION IN 38% REMARK 280 (V/V) POLYETHYLENE GLYCOL 3350, 0.088 M MES (PH 6.0) AND 44 MM REMARK 280 MANGANESE CHLORIDE FOR 6-8 H PRIOR TO DATA COLLECTION. 5% (V/V) REMARK 280 METHANOL WAS ADDED TO THE STABILISATION SOLUTION, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.26450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.26450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 585 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 104 REMARK 465 TYR A 105 REMARK 465 MET A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 172 REMARK 465 ASN A 173 REMARK 465 GLN A 174 REMARK 465 TYR A 175 REMARK 465 LEU A 176 REMARK 465 GLY A 259 REMARK 465 PRO A 260 REMARK 465 ARG A 261 REMARK 465 TYR A 262 REMARK 465 CYS A 263 REMARK 465 ASN A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 SER A 268 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 ASN A 271 REMARK 465 SER A 272 REMARK 465 MET A 273 REMARK 465 TYR A 353 REMARK 465 GLU A 354 REMARK 465 GLN A 355 REMARK 465 HIS A 356 REMARK 465 LEU A 357 REMARK 465 THR A 358 REMARK 465 ASP A 359 REMARK 465 TYR A 360 REMARK 465 GLU A 361 REMARK 465 LYS A 362 REMARK 465 ILE A 363 REMARK 465 LYS A 364 REMARK 465 GLU A 365 REMARK 465 GLY A 366 REMARK 465 PHE A 367 REMARK 465 LYS A 368 REMARK 465 ASN A 369 REMARK 465 LYS A 370 REMARK 465 ASN A 371 REMARK 465 ALA A 372 REMARK 465 SER A 373 REMARK 465 MET A 374 REMARK 465 ILE A 375 REMARK 465 LYS A 376 REMARK 465 SER A 377 REMARK 465 ALA A 378 REMARK 465 PHE A 379 REMARK 465 LEU A 380 REMARK 465 PRO A 381 REMARK 465 THR A 382 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 ASN B 104 REMARK 465 TYR B 105 REMARK 465 MET B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 172 REMARK 465 ASN B 173 REMARK 465 GLN B 174 REMARK 465 TYR B 175 REMARK 465 LEU B 176 REMARK 465 TYR B 202 REMARK 465 LYS B 203 REMARK 465 ASP B 204 REMARK 465 ASN B 205 REMARK 465 LYS B 206 REMARK 465 TYR B 207 REMARK 465 VAL B 208 REMARK 465 LYS B 209 REMARK 465 ASN B 210 REMARK 465 ASN B 228 REMARK 465 ASP B 229 REMARK 465 LYS B 230 REMARK 465 ASN B 231 REMARK 465 SER B 232 REMARK 465 GLY B 259 REMARK 465 PRO B 260 REMARK 465 ARG B 261 REMARK 465 TYR B 262 REMARK 465 CYS B 263 REMARK 465 ASN B 264 REMARK 465 LYS B 265 REMARK 465 ASP B 266 REMARK 465 GLU B 267 REMARK 465 SER B 268 REMARK 465 LYS B 269 REMARK 465 ARG B 270 REMARK 465 ASN B 271 REMARK 465 SER B 272 REMARK 465 MET B 273 REMARK 465 LYS B 351 REMARK 465 GLN B 352 REMARK 465 TYR B 353 REMARK 465 GLU B 354 REMARK 465 GLN B 355 REMARK 465 HIS B 356 REMARK 465 LEU B 357 REMARK 465 THR B 358 REMARK 465 ASP B 359 REMARK 465 TYR B 360 REMARK 465 GLU B 361 REMARK 465 LYS B 362 REMARK 465 ILE B 363 REMARK 465 LYS B 364 REMARK 465 PHE B 367 REMARK 465 LYS B 368 REMARK 465 ASN B 369 REMARK 465 LYS B 370 REMARK 465 ASN B 371 REMARK 465 ALA B 372 REMARK 465 SER B 373 REMARK 465 MET B 374 REMARK 465 ILE B 375 REMARK 465 LYS B 376 REMARK 465 SER B 377 REMARK 465 ALA B 378 REMARK 465 PHE B 379 REMARK 465 LEU B 380 REMARK 465 PRO B 381 REMARK 465 THR B 382 REMARK 465 GLY B 383 REMARK 465 ALA B 384 REMARK 465 PHE B 385 REMARK 465 LYS B 386 REMARK 465 ALA B 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 LYS A 206 CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 PHE A 385 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 136 CG CD OE1 OE2 REMARK 470 TYR B 142 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 ASN B 160 CG OD1 ND2 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 200 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 225 CG1 CG2 CD1 REMARK 470 ASP B 227 CG OD1 OD2 REMARK 470 LYS B 243 CE NZ REMARK 470 ARG B 389 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 321 O HOH A 644 2.02 REMARK 500 OG1 THR B 194 OD1 ASP B 196 2.09 REMARK 500 N ASN A 108 O HOH A 624 2.09 REMARK 500 OE1 GLU B 343 O HOH B 590 2.11 REMARK 500 O ASP B 227 O HOH B 633 2.15 REMARK 500 O HOH B 634 O HOH B 642 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 555 O HOH B 556 2656 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 243 -71.05 -66.18 REMARK 500 ARG A 304 -68.43 -131.22 REMARK 500 ASN A 422 110.12 -164.86 REMARK 500 SER B 146 7.02 -152.56 REMARK 500 ASN B 297 37.01 -99.07 REMARK 500 ARG B 304 -61.42 -133.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R19 RELATED DB: PDB REMARK 900 RELATED ID: 4R1A RELATED DB: PDB REMARK 900 RELATED ID: 4R1B RELATED DB: PDB DBREF 4R1C A 104 438 UNP Q7KQK5 Q7KQK5_PLAF7 104 438 DBREF 4R1C B 104 438 UNP Q7KQK5 Q7KQK5_PLAF7 104 438 SEQRES 1 A 335 ASN TYR MET GLY ASN PRO TRP THR GLU TYR MET ALA LYS SEQRES 2 A 335 TYR ASP ILE GLU GLU VAL HIS GLY SER GLY ILE ARG VAL SEQRES 3 A 335 ASP LEU GLY GLU ASP ALA GLU VAL ALA GLY THR GLN TYR SEQRES 4 A 335 ARG LEU PRO SER GLY LYS CYS PRO VAL PHE GLY LYS GLY SEQRES 5 A 335 ILE ILE ILE GLU ASN SER ASN THR THR PHE LEU THR PRO SEQRES 6 A 335 VAL ALA THR GLY ASN GLN TYR LEU LYS ASP GLY GLY PHE SEQRES 7 A 335 ALA PHE PRO PRO THR GLU PRO LEU MET SER PRO MET THR SEQRES 8 A 335 LEU ASP GLU MET ARG HIS PHE TYR LYS ASP ASN LYS TYR SEQRES 9 A 335 VAL LYS ASN LEU ASP GLU LEU THR LEU CYS SER ARG HIS SEQRES 10 A 335 ALA GLY ASN MET ILE PRO ASP ASN ASP LYS ASN SER ASN SEQRES 11 A 335 TYR LYS TYR PRO ALA VAL TYR ASP ASP LYS ASP LYS LYS SEQRES 12 A 335 CYS HIS ILE LEU TYR ILE ALA ALA GLN GLU ASN ASN GLY SEQRES 13 A 335 PRO ARG TYR CYS ASN LYS ASP GLU SER LYS ARG ASN SER SEQRES 14 A 335 MET PHE CYS PHE ARG PRO ALA LYS ASP ILE SER PHE GLN SEQRES 15 A 335 ASN TYR THR TYR LEU SER LYS ASN VAL VAL ASP ASN TRP SEQRES 16 A 335 GLU LYS VAL CYS PRO ARG LYS ASN LEU GLN ASN ALA LYS SEQRES 17 A 335 PHE GLY LEU TRP VAL ASP GLY ASN CYS GLU ASP ILE PRO SEQRES 18 A 335 HIS VAL ASN GLU PHE PRO ALA ILE ASP LEU PHE GLU CYS SEQRES 19 A 335 ASN LYS LEU VAL PHE GLU LEU SER ALA SER ASP GLN PRO SEQRES 20 A 335 LYS GLN TYR GLU GLN HIS LEU THR ASP TYR GLU LYS ILE SEQRES 21 A 335 LYS GLU GLY PHE LYS ASN LYS ASN ALA SER MET ILE LYS SEQRES 22 A 335 SER ALA PHE LEU PRO THR GLY ALA PHE LYS ALA ASP ARG SEQRES 23 A 335 TYR LYS SER HIS GLY LYS GLY TYR ASN TRP GLY ASN TYR SEQRES 24 A 335 ASN THR GLU THR GLN LYS CYS GLU ILE PHE ASN VAL LYS SEQRES 25 A 335 PRO THR CYS LEU ILE ASN ASN SER SER TYR ILE ALA THR SEQRES 26 A 335 THR ALA LEU SER HIS PRO ILE GLU VAL GLU SEQRES 1 B 335 ASN TYR MET GLY ASN PRO TRP THR GLU TYR MET ALA LYS SEQRES 2 B 335 TYR ASP ILE GLU GLU VAL HIS GLY SER GLY ILE ARG VAL SEQRES 3 B 335 ASP LEU GLY GLU ASP ALA GLU VAL ALA GLY THR GLN TYR SEQRES 4 B 335 ARG LEU PRO SER GLY LYS CYS PRO VAL PHE GLY LYS GLY SEQRES 5 B 335 ILE ILE ILE GLU ASN SER ASN THR THR PHE LEU THR PRO SEQRES 6 B 335 VAL ALA THR GLY ASN GLN TYR LEU LYS ASP GLY GLY PHE SEQRES 7 B 335 ALA PHE PRO PRO THR GLU PRO LEU MET SER PRO MET THR SEQRES 8 B 335 LEU ASP GLU MET ARG HIS PHE TYR LYS ASP ASN LYS TYR SEQRES 9 B 335 VAL LYS ASN LEU ASP GLU LEU THR LEU CYS SER ARG HIS SEQRES 10 B 335 ALA GLY ASN MET ILE PRO ASP ASN ASP LYS ASN SER ASN SEQRES 11 B 335 TYR LYS TYR PRO ALA VAL TYR ASP ASP LYS ASP LYS LYS SEQRES 12 B 335 CYS HIS ILE LEU TYR ILE ALA ALA GLN GLU ASN ASN GLY SEQRES 13 B 335 PRO ARG TYR CYS ASN LYS ASP GLU SER LYS ARG ASN SER SEQRES 14 B 335 MET PHE CYS PHE ARG PRO ALA LYS ASP ILE SER PHE GLN SEQRES 15 B 335 ASN TYR THR TYR LEU SER LYS ASN VAL VAL ASP ASN TRP SEQRES 16 B 335 GLU LYS VAL CYS PRO ARG LYS ASN LEU GLN ASN ALA LYS SEQRES 17 B 335 PHE GLY LEU TRP VAL ASP GLY ASN CYS GLU ASP ILE PRO SEQRES 18 B 335 HIS VAL ASN GLU PHE PRO ALA ILE ASP LEU PHE GLU CYS SEQRES 19 B 335 ASN LYS LEU VAL PHE GLU LEU SER ALA SER ASP GLN PRO SEQRES 20 B 335 LYS GLN TYR GLU GLN HIS LEU THR ASP TYR GLU LYS ILE SEQRES 21 B 335 LYS GLU GLY PHE LYS ASN LYS ASN ALA SER MET ILE LYS SEQRES 22 B 335 SER ALA PHE LEU PRO THR GLY ALA PHE LYS ALA ASP ARG SEQRES 23 B 335 TYR LYS SER HIS GLY LYS GLY TYR ASN TRP GLY ASN TYR SEQRES 24 B 335 ASN THR GLU THR GLN LYS CYS GLU ILE PHE ASN VAL LYS SEQRES 25 B 335 PRO THR CYS LEU ILE ASN ASN SER SER TYR ILE ALA THR SEQRES 26 B 335 THR ALA LEU SER HIS PRO ILE GLU VAL GLU FORMUL 3 HOH *303(H2 O) HELIX 1 1 GLU A 112 TYR A 117 5 6 HELIX 2 2 ASP A 118 HIS A 123 1 6 HELIX 3 3 LEU A 195 TYR A 202 1 8 HELIX 4 4 ASP A 212 GLY A 222 1 11 HELIX 5 5 ASP A 281 GLN A 285 5 5 HELIX 6 6 ASN A 297 CYS A 302 1 6 HELIX 7 7 ASP A 333 SER A 345 1 13 HELIX 8 8 ALA A 387 LYS A 391 5 5 HELIX 9 9 TRP B 110 ALA B 115 1 6 HELIX 10 10 ASP B 118 HIS B 123 1 6 HELIX 11 11 LEU B 195 PHE B 201 1 7 HELIX 12 12 ASP B 212 ASN B 223 1 12 HELIX 13 13 ILE B 282 GLN B 285 5 4 HELIX 14 14 ASN B 297 CYS B 302 1 6 HELIX 15 15 ASP B 333 SER B 345 1 13 SHEET 1 A 2 GLU A 133 VAL A 137 0 SHEET 2 A 2 THR A 140 LEU A 144 -1 O THR A 140 N VAL A 137 SHEET 1 B 5 VAL A 151 PHE A 152 0 SHEET 2 B 5 TYR A 287 LEU A 290 -1 O TYR A 289 N VAL A 151 SHEET 3 B 5 ALA A 238 ASP A 241 -1 N ALA A 238 O LEU A 290 SHEET 4 B 5 LYS A 246 ILE A 249 -1 O LYS A 246 N ASP A 241 SHEET 5 B 5 MET A 193 THR A 194 -1 N MET A 193 O CYS A 247 SHEET 1 C 2 GLY A 155 GLU A 159 0 SHEET 2 C 2 CYS A 275 ALA A 279 -1 O ARG A 277 N ILE A 157 SHEET 1 D 6 ASN A 319 ASP A 322 0 SHEET 2 D 6 ASN A 306 VAL A 316 -1 N LEU A 314 O GLU A 321 SHEET 3 D 6 CYS A 418 THR A 429 -1 O ILE A 420 N LYS A 311 SHEET 4 D 6 TRP A 399 ASN A 403 -1 N TYR A 402 O ILE A 426 SHEET 5 D 6 LYS A 408 PHE A 412 -1 O LYS A 408 N ASN A 403 SHEET 6 D 6 ASN A 327 PRO A 330 -1 N PHE A 329 O CYS A 409 SHEET 1 E 3 ASN A 319 ASP A 322 0 SHEET 2 E 3 ASN A 306 VAL A 316 -1 N LEU A 314 O GLU A 321 SHEET 3 E 3 VAL A 437 GLU A 438 1 O GLU A 438 N GLN A 308 SHEET 1 F 2 GLU B 133 VAL B 137 0 SHEET 2 F 2 THR B 140 LEU B 144 -1 O TYR B 142 N ALA B 135 SHEET 1 G 5 VAL B 151 PHE B 152 0 SHEET 2 G 5 TYR B 287 LEU B 290 -1 O TYR B 289 N VAL B 151 SHEET 3 G 5 ALA B 238 ASP B 241 -1 N ALA B 238 O LEU B 290 SHEET 4 G 5 LYS B 246 ILE B 249 -1 O HIS B 248 N VAL B 239 SHEET 5 G 5 MET B 193 THR B 194 -1 N MET B 193 O CYS B 247 SHEET 1 H 2 LYS B 154 ILE B 158 0 SHEET 2 H 2 PHE B 276 LYS B 280 -1 O ARG B 277 N ILE B 157 SHEET 1 I 6 ASN B 327 PRO B 330 0 SHEET 2 I 6 LYS B 408 PHE B 412 -1 O CYS B 409 N PHE B 329 SHEET 3 I 6 TRP B 399 ASN B 403 -1 N ASN B 403 O LYS B 408 SHEET 4 I 6 TYR B 425 THR B 429 -1 O ILE B 426 N TYR B 402 SHEET 5 I 6 ASN B 306 GLN B 308 -1 N LEU B 307 O ALA B 427 SHEET 6 I 6 VAL B 437 GLU B 438 1 O GLU B 438 N ASN B 306 SHEET 1 J 3 ASN B 319 ASP B 322 0 SHEET 2 J 3 LYS B 311 VAL B 316 -1 N VAL B 316 O ASN B 319 SHEET 3 J 3 CYS B 418 ILE B 420 -1 O ILE B 420 N LYS B 311 SSBOND 1 CYS A 149 CYS A 302 1555 1555 2.04 SSBOND 2 CYS A 217 CYS A 247 1555 1555 2.04 SSBOND 3 CYS A 320 CYS A 418 1555 1555 2.03 SSBOND 4 CYS A 337 CYS A 409 1555 1555 2.03 SSBOND 5 CYS B 149 CYS B 302 1555 1555 2.03 SSBOND 6 CYS B 217 CYS B 247 1555 1555 2.05 SSBOND 7 CYS B 320 CYS B 418 1555 1555 2.03 SSBOND 8 CYS B 337 CYS B 409 1555 1555 2.06 CISPEP 1 GLU A 187 PRO A 188 0 -5.99 CISPEP 2 SER A 191 PRO A 192 0 -1.88 CISPEP 3 GLU B 187 PRO B 188 0 -0.28 CISPEP 4 SER B 191 PRO B 192 0 1.00 CRYST1 156.529 54.500 67.955 90.00 91.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006389 0.000000 0.000159 0.00000 SCALE2 0.000000 0.018349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014720 0.00000