HEADER METAL BINDING PROTEIN, UNKNOWN FUNCTION 12-AUG-14 4R2K TITLE CRYSTAL STRUCTURE OF H119A MUTANT OF YDAA (UNIVERSAL STRESS PROTEIN E) TITLE 2 FROM SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNIVERSAL STRESS PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. LT2; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 GENE: STM1661, USPE, YDAA USPE STM1661; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRSET C KEYWDS UNIVERSAL STRESS PROTEIN, HUP DOMAIN, INTERNAL SYMMETRY, STRESS KEYWDS 2 TOLERANCE, ATP BINDING, ZINC BINDING, METAL BINDING PROTEIN, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.BANGERA,M.R.N.MURTHY REVDAT 3 08-NOV-23 4R2K 1 REMARK REVDAT 2 24-AUG-22 4R2K 1 JRNL REMARK SEQADV REVDAT 1 04-FEB-15 4R2K 0 JRNL AUTH M.BANGERA,R.PANIGRAHI,S.R.SAGURTHI,H.S.SAVITHRI,M.R.MURTHY JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF TWO UNIVERSAL STRESS JRNL TITL 2 PROTEINS YDAA AND YNAF FROM SALMONELLA TYPHIMURIUM: POSSIBLE JRNL TITL 3 ROLES IN MICROBIAL STRESS TOLERANCE. JRNL REF J.STRUCT.BIOL. V. 189 238 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 25600413 JRNL DOI 10.1016/J.JSB.2015.01.003 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1811 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -2.81000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2602 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2513 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3527 ; 1.857 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5772 ; 0.893 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 6.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.682 ;24.779 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;13.347 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2861 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 1.340 ; 1.549 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1250 ; 1.340 ; 1.545 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1564 ; 1.953 ; 2.308 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1565 ; 1.956 ; 2.310 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1351 ; 2.480 ; 1.921 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1334 ; 2.403 ; 1.871 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1936 ; 3.490 ; 2.654 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3186 ; 7.122 ;14.734 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3187 ; 7.122 ;14.743 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0470 -29.8470 -8.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0110 REMARK 3 T33: 0.0417 T12: -0.0189 REMARK 3 T13: -0.0063 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.0514 L22: 2.4246 REMARK 3 L33: 0.9373 L12: -0.9556 REMARK 3 L13: 0.4979 L23: -1.0598 REMARK 3 S TENSOR REMARK 3 S11: 0.1833 S12: -0.0411 S13: -0.0309 REMARK 3 S21: 0.0354 S22: -0.0563 S23: -0.0259 REMARK 3 S31: -0.0103 S32: 0.0435 S33: -0.1269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953725 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 39.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 4R2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, UNDER OIL, REMARK 280 MICROBATCH, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.65000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.47500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.82500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 219.12500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.65000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.82500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.47500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 219.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 39.91000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -69.12615 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.82500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C1 OXD A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 ASP A 312 REMARK 465 GLU A 313 REMARK 465 ASP A 314 REMARK 465 ASP A 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 121 CZ NH1 NH2 REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 241 CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 ASP A 311 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 166 CD GLU A 166 OE2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 51 -7.41 67.33 REMARK 500 ASP A 147 39.72 -88.44 REMARK 500 GLU A 166 130.53 -30.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXD A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 424 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R2J RELATED DB: PDB REMARK 900 RELATED ID: 4R2L RELATED DB: PDB REMARK 900 RELATED ID: 4R2M RELATED DB: PDB DBREF 4R2K A 1 315 UNP Q8ZP84 USPE_SALTY 1 315 SEQADV 4R2K MET A -13 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K ARG A -12 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K GLY A -11 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K SER A -10 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K HIS A -9 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K HIS A -8 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K HIS A -7 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K HIS A -6 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K HIS A -5 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K HIS A -4 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K GLY A -3 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K MET A -2 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K ALA A -1 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K SER A 0 UNP Q8ZP84 EXPRESSION TAG SEQADV 4R2K ALA A 119 UNP Q8ZP84 HIS 119 ENGINEERED MUTATION SEQRES 1 A 329 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 329 SER MET ALA MET TYR GLN ASN MET LEU VAL VAL ILE ASP SEQRES 3 A 329 PRO ASN GLN ASP ASP GLN PRO ALA LEU ARG ARG ALA VAL SEQRES 4 A 329 TYR LEU HIS GLN ARG ILE GLY GLY LYS ILE LYS ALA PHE SEQRES 5 A 329 LEU PRO ILE TYR ASP PHE SER TYR GLU MET THR THR LEU SEQRES 6 A 329 LEU SER PRO ASP GLU ARG THR ALA MET ARG GLN GLY VAL SEQRES 7 A 329 ILE SER GLN ARG THR ALA TRP ILE ARG GLU GLN ALA LYS SEQRES 8 A 329 TYR TYR LEU GLU ALA GLY VAL PRO ILE GLU ILE LYS VAL SEQRES 9 A 329 VAL TRP HIS ASN ARG PRO PHE GLU ALA ILE ILE GLN GLU SEQRES 10 A 329 VAL ILE ALA GLY SER HIS ASP LEU VAL LEU LYS MET ALA SEQRES 11 A 329 HIS GLN ALA ASP ARG LEU GLU ALA VAL ILE PHE THR PRO SEQRES 12 A 329 THR ASP TRP HIS LEU LEU ARG LYS CYS PRO SER PRO VAL SEQRES 13 A 329 TRP MET VAL LYS ASP GLN PRO TRP PRO GLU GLY GLY LYS SEQRES 14 A 329 ALA LEU VAL ALA VAL ASN LEU ALA SER GLU GLU PRO TYR SEQRES 15 A 329 HIS ASN ALA LEU ASN GLU LYS LEU VAL LYS GLU THR LEU SEQRES 16 A 329 GLN LEU ALA GLU GLN VAL ASN HIS THR GLU VAL HIS LEU SEQRES 17 A 329 VAL GLY ALA TYR PRO VAL THR PRO ILE ASN ILE ALA ILE SEQRES 18 A 329 GLU LEU PRO GLU PHE ASP PRO SER VAL TYR ASN ASP ALA SEQRES 19 A 329 ILE ARG GLY GLN HIS LEU LEU ALA MET LYS ALA LEU ARG SEQRES 20 A 329 GLN LYS PHE SER ILE ASP GLU LYS VAL THR HIS VAL GLU SEQRES 21 A 329 LYS GLY LEU PRO GLU GLU VAL ILE PRO ASP LEU ALA GLU SEQRES 22 A 329 HIS LEU GLN ALA GLY ILE VAL VAL LEU GLY THR VAL GLY SEQRES 23 A 329 ARG THR GLY LEU SER ALA ALA PHE LEU GLY ASN THR ALA SEQRES 24 A 329 GLU GLN VAL ILE ASP HIS LEU ARG CYS ASP LEU LEU VAL SEQRES 25 A 329 ILE LYS PRO ASP GLU TYR GLN THR PRO VAL GLU LEU ASP SEQRES 26 A 329 ASP GLU ASP ASP HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HET EDO A 418 4 HET EDO A 419 4 HET EDO A 420 4 HET SO4 A 421 5 HET SO4 A 422 5 HET OXD A 423 6 HET SO4 A 424 5 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM OXD OXALIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 7(O4 S 2-) FORMUL 6 EDO 16(C2 H6 O2) FORMUL 24 OXD C2 H2 O4 FORMUL 26 HOH *325(H2 O) HELIX 1 1 GLN A 18 GLY A 32 1 15 HELIX 2 2 PHE A 44 THR A 49 1 6 HELIX 3 3 SER A 53 ALA A 76 1 24 HELIX 4 4 ALA A 76 ALA A 82 1 7 HELIX 5 5 ARG A 95 SER A 108 1 14 HELIX 6 6 THR A 128 CYS A 138 1 11 HELIX 7 7 ASN A 170 VAL A 187 1 18 HELIX 8 8 PRO A 202 ILE A 207 1 6 HELIX 9 9 ASP A 213 PHE A 236 1 24 HELIX 10 10 ASP A 239 LYS A 241 5 3 HELIX 11 11 LEU A 249 LEU A 261 1 13 HELIX 12 12 SER A 277 ASP A 290 1 14 SHEET 1 A10 ILE A 86 HIS A 93 0 SHEET 2 A10 LYS A 34 TYR A 42 1 N ILE A 41 O VAL A 91 SHEET 3 A10 ASN A 6 VAL A 10 1 N VAL A 9 O PHE A 38 SHEET 4 A10 LEU A 111 ALA A 116 1 O LEU A 111 N LEU A 8 SHEET 5 A10 VAL A 142 LYS A 146 1 O TRP A 143 N VAL A 112 SHEET 6 A10 ASP A 295 ILE A 299 -1 O LEU A 296 N MET A 144 SHEET 7 A10 ALA A 263 GLY A 269 1 N LEU A 268 O LEU A 297 SHEET 8 A10 LYS A 155 ALA A 159 1 N LEU A 157 O VAL A 267 SHEET 9 A10 VAL A 192 TYR A 198 1 O HIS A 193 N ALA A 156 SHEET 10 A10 THR A 243 LYS A 247 1 O HIS A 244 N GLY A 196 CISPEP 1 GLU A 166 PRO A 167 0 3.98 SITE 1 AC1 6 LYS A 114 THR A 128 THR A 130 GLN A 287 SITE 2 AC1 6 HOH A 532 HOH A 732 SITE 1 AC2 3 THR A 58 ARG A 61 GLN A 62 SITE 1 AC3 5 HIS A 291 ARG A 293 EDO A 414 HOH A 617 SITE 2 AC3 5 HOH A 736 SITE 1 AC4 1 ARG A 222 SITE 1 AC5 6 VAL A 200 PRO A 202 LEU A 249 GLU A 252 SITE 2 AC5 6 HOH A 548 HOH A 811 SITE 1 AC6 4 GLN A 15 ASP A 16 ASP A 17 HOH A 682 SITE 1 AC7 7 ARG A 22 TYR A 26 SER A 164 GLU A 166 SITE 2 AC7 7 EDO A 410 HOH A 567 HOH A 655 SITE 1 AC8 3 VAL A 64 ARG A 68 EDO A 417 SITE 1 AC9 6 GLN A 75 ALA A 76 LYS A 77 TYR A 78 SITE 2 AC9 6 GLN A 224 HOH A 690 SITE 1 BC1 6 ARG A 22 TYR A 79 SER A 164 EDO A 407 SITE 2 BC1 6 HOH A 582 HOH A 632 SITE 1 BC2 5 GLU A 81 ALA A 82 GLY A 83 ASP A 213 SITE 2 BC2 5 HOH A 812 SITE 1 BC3 6 VAL A 271 GLY A 272 GLY A 275 PRO A 301 SITE 2 BC3 6 HOH A 513 HOH A 823 SITE 1 BC4 5 ASN A 14 GLU A 251 HIS A 291 HOH A 665 SITE 2 BC4 5 HOH A 729 SITE 1 BC5 4 HIS A 291 ARG A 293 SO4 A 403 HOH A 609 SITE 1 BC6 6 ASP A 16 ASP A 17 GLN A 18 ARG A 22 SITE 2 BC6 6 TYR A 79 HOH A 584 SITE 1 BC7 5 GLY A 269 LEU A 281 ALA A 285 HOH A 589 SITE 2 BC7 5 HOH A 782 SITE 1 BC8 7 PRO A 13 ASN A 14 ARG A 68 LEU A 249 SITE 2 BC8 7 GLU A 252 EDO A 408 HOH A 514 SITE 1 BC9 5 PRO A 13 GLN A 15 ASP A 16 HOH A 539 SITE 2 BC9 5 HOH A 754 SITE 1 CC1 5 ARG A 222 LYS A 247 HOH A 504 HOH A 596 SITE 2 CC1 5 HOH A 720 SITE 1 CC2 5 ASN A 94 ALA A 278 ALA A 279 HOH A 519 SITE 2 CC2 5 HOH A 597 SITE 1 CC3 3 ARG A 233 GLN A 234 HOH A 505 SITE 1 CC4 5 PRO A 202 ILE A 203 HOH A 636 HOH A 766 SITE 2 CC4 5 HOH A 811 SITE 1 CC5 3 HIS A 133 ARG A 136 LYS A 137 SITE 1 CC6 3 HIS A 244 HIS A 260 HOH A 661 CRYST1 79.820 79.820 262.950 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012528 0.007233 0.000000 0.00000 SCALE2 0.000000 0.014466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003803 0.00000