HEADER HYDROLASE 18-AUG-14 4R3V TITLE STRUCTURE OF KARILYSIN PROPEPTIDE AND CATALYTIC MMP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KARILYSIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THE PROPEPTIDE AND THE CATALYTIC DOMAIN (UNP RESIDUES 21- COMPND 5 201); COMPND 6 SYNONYM: MATRIX METALLOPROTEASE-LIKE ENZYME, MMP-LIKE ENZYME, COMPND 7 KARILYSIN LONG FORM KLY38, KARILYSIN SHORT FORM KLY18; COMPND 8 EC: 3.4.24.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA; SOURCE 3 ORGANISM_TAXID: 203275; SOURCE 4 STRAIN: ATCC 43037 / JCM 10827 / FDC 338; SOURCE 5 GENE: KLY, BFO_2683; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS METZINCIN METALLOPEPTIDASE, MATRIX METALLOPROTEINASE WITH UNIQUE KEYWDS 2 PROPEPTIDE, BACTERIAL MATRIX METALLOPROTEINASE-LIKE ENZYME, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LOPEZ-PELEGRIN,M.KSIAZEK,A.Y.KARIM,T.GUEVARA,J.L.AROLAS,J.POTEMPA, AUTHOR 2 F.X.GOMIS-RUTH REVDAT 4 20-SEP-23 4R3V 1 REMARK SEQADV LINK REVDAT 3 11-MAR-15 4R3V 1 JRNL REVDAT 2 21-JAN-15 4R3V 1 JRNL REVDAT 1 07-JAN-15 4R3V 0 JRNL AUTH M.LOPEZ-PELEGRIN,M.KSIAZEK,A.Y.KARIM,T.GUEVARA,J.L.AROLAS, JRNL AUTH 2 J.POTEMPA,F.X.GOMIS-RUTH JRNL TITL A NOVEL MECHANISM OF LATENCY IN MATRIX METALLOPROTEINASES. JRNL REF J.BIOL.CHEM. V. 290 4728 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25555916 JRNL DOI 10.1074/JBC.M114.605956 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.250 REMARK 3 FREE R VALUE TEST SET COUNT : 741 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.11 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2963 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1932 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2874 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE : 0.1940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 741 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.23420 REMARK 3 B22 (A**2) : -1.90490 REMARK 3 B33 (A**2) : -3.32930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.84130 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.215 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.182 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2948 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4020 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1273 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 432 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2948 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 370 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 28 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3528 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|21 - B|199 B|301 - B|301 B|302 - B|302 B|303 - REMARK 3 B|303 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.4666 7.7998 14.9053 REMARK 3 T TENSOR REMARK 3 T11: -0.0307 T22: -0.1117 REMARK 3 T33: 0.1631 T12: -0.0050 REMARK 3 T13: -0.0321 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.5159 L22: 2.2302 REMARK 3 L33: 0.3985 L12: -0.0086 REMARK 3 L13: -0.1656 L23: 0.3013 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.0361 S13: 0.1101 REMARK 3 S21: -0.0631 S22: -0.0398 S23: -0.0719 REMARK 3 S31: -0.0459 S32: -0.0249 S33: 0.0116 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|21 - A|199 A|301 - A|301 A|302 - A|302 A|303 - REMARK 3 A|303 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.9757 36.9256 23.4357 REMARK 3 T TENSOR REMARK 3 T11: -0.0630 T22: -0.1432 REMARK 3 T33: 0.1969 T12: -0.0019 REMARK 3 T13: -0.0552 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 1.2783 L22: 1.3027 REMARK 3 L33: 0.2616 L12: -0.1262 REMARK 3 L13: -0.0351 L23: 0.1870 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.0297 S13: 0.0495 REMARK 3 S21: -0.0587 S22: -0.0199 S23: -0.0430 REMARK 3 S31: 0.0224 S32: -0.0236 S33: -0.0134 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22975 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 60.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4IN9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, 0.2 M REMARK 280 POTASSIUM THIOCYANATE, 20% (W/V) POLYETHYLENE GLYCOL 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.84500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 PHE A 200 REMARK 465 SER A 201 REMARK 465 GLY B 19 REMARK 465 PRO B 20 REMARK 465 PHE B 200 REMARK 465 SER B 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -129.34 38.94 REMARK 500 LEU A 37 -58.51 86.80 REMARK 500 LEU A 58 -162.76 58.11 REMARK 500 LYS A 181 70.16 -151.39 REMARK 500 ARG A 182 56.85 -94.97 REMARK 500 SER B 54 -163.76 -127.81 REMARK 500 LYS B 181 71.07 -152.06 REMARK 500 ARG B 182 56.50 -95.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 52 10.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD1 REMARK 620 2 HIS A 155 NE2 126.6 REMARK 620 3 HIS A 159 NE2 102.2 104.9 REMARK 620 4 HIS A 165 NE2 102.4 117.4 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 ASP A 104 OD2 102.3 REMARK 620 3 HIS A 117 NE2 115.2 113.6 REMARK 620 4 HIS A 133 ND1 113.8 97.5 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 GLY A 110 O 97.3 REMARK 620 3 THR A 112 O 80.8 82.5 REMARK 620 4 ILE A 114 O 95.5 166.9 102.2 REMARK 620 5 ASP A 135 OD2 89.4 78.2 157.0 99.4 REMARK 620 6 GLU A 138 OE2 167.2 86.3 87.5 81.7 103.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 25 OD1 REMARK 620 2 HIS B 155 NE2 127.2 REMARK 620 3 HIS B 159 NE2 104.7 104.5 REMARK 620 4 HIS B 165 NE2 102.3 115.6 98.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 102 NE2 REMARK 620 2 ASP B 104 OD2 102.5 REMARK 620 3 HIS B 117 NE2 115.6 110.5 REMARK 620 4 HIS B 133 ND1 116.1 97.5 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 GLY B 110 O 98.5 REMARK 620 3 THR B 112 O 81.1 83.3 REMARK 620 4 ILE B 114 O 92.6 168.9 98.9 REMARK 620 5 ASP B 135 OD2 89.8 79.2 158.9 100.5 REMARK 620 6 GLU B 138 OE2 166.7 86.1 87.1 83.2 103.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XS3 RELATED DB: PDB REMARK 900 STRUCTURE OF KARILYSIN CATALYTIC MMP DOMAIN REMARK 900 RELATED ID: 2XS4 RELATED DB: PDB REMARK 900 STRUCTURE OF KARILYSIN CATALYTIC MMP DOMAIN IN COMPLEX WITH REMARK 900 MAGNESIUM REMARK 900 RELATED ID: 4IN9 RELATED DB: PDB REMARK 900 STRUCTURE OF KARILYSIN CATALYTIC MMP DOMAIN IN COMPLEX WITH REMARK 900 INHIBITORY TETRAPEPTIDE SWFP DBREF 4R3V A 21 201 UNP D0EM77 KLY_TANFA 21 201 DBREF 4R3V B 21 201 UNP D0EM77 KLY_TANFA 21 201 SEQADV 4R3V GLY A 19 UNP D0EM77 EXPRESSION TAG SEQADV 4R3V PRO A 20 UNP D0EM77 EXPRESSION TAG SEQADV 4R3V ALA A 156 UNP D0EM77 GLU 156 ENGINEERED MUTATION SEQADV 4R3V GLY B 19 UNP D0EM77 EXPRESSION TAG SEQADV 4R3V PRO B 20 UNP D0EM77 EXPRESSION TAG SEQADV 4R3V ALA B 156 UNP D0EM77 GLU 156 ENGINEERED MUTATION SEQRES 1 A 183 GLY PRO GLN ARG LEU TYR ASP ASN GLY PRO LEU THR GLY SEQRES 2 A 183 ASP ASN ASN TYR VAL LEU GLN GLY SER LYS TRP ASN LYS SEQRES 3 A 183 THR THR LEU LYS TYR TYR ILE TYR ASN SER SER SER HIS SEQRES 4 A 183 LEU THR THR THR GLU ARG GLU ASN ALA ILE ARG SER ALA SEQRES 5 A 183 PHE ALA LEU TRP SER ASP LYS SER THR LEU SER PHE ILE SEQRES 6 A 183 GLN VAL TYR ASN PRO ASN GLN ALA ASP ILE LYS ILE LYS SEQRES 7 A 183 TRP GLU LYS GLY ASN HIS GLY ASP GLY TYR PRO PHE ASP SEQRES 8 A 183 GLY ASN THR GLY ILE LEU ALA HIS ALA PHE TYR PRO PRO SEQRES 9 A 183 PRO ALA GLY GLY ASN TYR ALA GLY HIS LEU HIS PHE ASP SEQRES 10 A 183 GLY ASP GLU ASN TRP SER ILE ASN GLY SER GLY ILE ASP SEQRES 11 A 183 LEU ILE THR VAL ALA ALA HIS ALA ILE GLY HIS LEU LEU SEQRES 12 A 183 GLY ILE GLU HIS SER ASN VAL SER SER ALA LEU MET TYR SEQRES 13 A 183 PRO TYR TYR THR GLY ILE LYS ARG GLN LEU ASP ASN ASP SEQRES 14 A 183 ASP CYS LEU ALA VAL TRP ASP LEU TYR GLY TYR PRO PHE SEQRES 15 A 183 SER SEQRES 1 B 183 GLY PRO GLN ARG LEU TYR ASP ASN GLY PRO LEU THR GLY SEQRES 2 B 183 ASP ASN ASN TYR VAL LEU GLN GLY SER LYS TRP ASN LYS SEQRES 3 B 183 THR THR LEU LYS TYR TYR ILE TYR ASN SER SER SER HIS SEQRES 4 B 183 LEU THR THR THR GLU ARG GLU ASN ALA ILE ARG SER ALA SEQRES 5 B 183 PHE ALA LEU TRP SER ASP LYS SER THR LEU SER PHE ILE SEQRES 6 B 183 GLN VAL TYR ASN PRO ASN GLN ALA ASP ILE LYS ILE LYS SEQRES 7 B 183 TRP GLU LYS GLY ASN HIS GLY ASP GLY TYR PRO PHE ASP SEQRES 8 B 183 GLY ASN THR GLY ILE LEU ALA HIS ALA PHE TYR PRO PRO SEQRES 9 B 183 PRO ALA GLY GLY ASN TYR ALA GLY HIS LEU HIS PHE ASP SEQRES 10 B 183 GLY ASP GLU ASN TRP SER ILE ASN GLY SER GLY ILE ASP SEQRES 11 B 183 LEU ILE THR VAL ALA ALA HIS ALA ILE GLY HIS LEU LEU SEQRES 12 B 183 GLY ILE GLU HIS SER ASN VAL SER SER ALA LEU MET TYR SEQRES 13 B 183 PRO TYR TYR THR GLY ILE LYS ARG GLN LEU ASP ASN ASP SEQRES 14 B 183 ASP CYS LEU ALA VAL TRP ASP LEU TYR GLY TYR PRO PHE SEQRES 15 B 183 SER HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET ZN B 301 1 HET ZN B 302 1 HET CA B 303 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 2(CA 2+) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 12 HOH *226(H2 O) HELIX 1 1 THR A 59 ASP A 76 1 18 HELIX 2 2 ASN A 87 ALA A 91 5 5 HELIX 3 3 GLY A 125 ALA A 129 5 5 HELIX 4 4 LEU A 149 LEU A 161 1 13 HELIX 5 5 ASP A 185 GLY A 197 1 13 HELIX 6 6 THR B 59 LYS B 77 1 19 HELIX 7 7 ASN B 87 ALA B 91 5 5 HELIX 8 8 GLY B 125 ALA B 129 5 5 HELIX 9 9 LEU B 149 LEU B 161 1 13 HELIX 10 10 ASP B 185 GLY B 197 1 13 SHEET 1 A 5 SER A 81 GLN A 84 0 SHEET 2 A 5 THR A 46 ILE A 51 1 N LEU A 47 O SER A 81 SHEET 3 A 5 ILE A 93 GLU A 98 1 O ILE A 95 N TYR A 50 SHEET 4 A 5 HIS A 131 ASP A 135 1 O PHE A 134 N GLU A 98 SHEET 5 A 5 ALA A 116 ALA A 118 -1 N HIS A 117 O HIS A 133 SHEET 1 B 2 TRP A 140 SER A 141 0 SHEET 2 B 2 ILE A 147 ASP A 148 1 O ILE A 147 N SER A 141 SHEET 1 C 2 ARG B 22 LEU B 23 0 SHEET 2 C 2 TYR B 176 TYR B 177 -1 O TYR B 177 N ARG B 22 SHEET 1 D 5 SER B 81 GLN B 84 0 SHEET 2 D 5 THR B 46 ILE B 51 1 N LEU B 47 O SER B 81 SHEET 3 D 5 ILE B 93 GLU B 98 1 O ILE B 95 N TYR B 50 SHEET 4 D 5 HIS B 131 ASP B 135 1 O PHE B 134 N GLU B 98 SHEET 5 D 5 ALA B 116 ALA B 118 -1 N HIS B 117 O HIS B 133 SHEET 1 E 2 TRP B 140 SER B 141 0 SHEET 2 E 2 ILE B 147 ASP B 148 1 O ILE B 147 N SER B 141 LINK OD1 ASP A 25 ZN ZN A 301 1555 1555 2.04 LINK NE2 HIS A 102 ZN ZN A 302 1555 1555 2.05 LINK OD2 ASP A 104 ZN ZN A 302 1555 1555 1.99 LINK OD1 ASP A 109 CA CA A 303 1555 1555 2.37 LINK O GLY A 110 CA CA A 303 1555 1555 2.39 LINK O THR A 112 CA CA A 303 1555 1555 2.37 LINK O ILE A 114 CA CA A 303 1555 1555 2.34 LINK NE2 HIS A 117 ZN ZN A 302 1555 1555 2.00 LINK ND1 HIS A 133 ZN ZN A 302 1555 1555 2.06 LINK OD2 ASP A 135 CA CA A 303 1555 1555 2.38 LINK OE2 GLU A 138 CA CA A 303 1555 1555 2.35 LINK NE2 HIS A 155 ZN ZN A 301 1555 1555 2.02 LINK NE2 HIS A 159 ZN ZN A 301 1555 1555 2.05 LINK NE2 HIS A 165 ZN ZN A 301 1555 1555 2.01 LINK OD1 ASP B 25 ZN ZN B 301 1555 1555 2.01 LINK NE2 HIS B 102 ZN ZN B 302 1555 1555 2.02 LINK OD2 ASP B 104 ZN ZN B 302 1555 1555 2.02 LINK OD1 ASP B 109 CA CA B 303 1555 1555 2.37 LINK O GLY B 110 CA CA B 303 1555 1555 2.37 LINK O THR B 112 CA CA B 303 1555 1555 2.37 LINK O ILE B 114 CA CA B 303 1555 1555 2.37 LINK NE2 HIS B 117 ZN ZN B 302 1555 1555 2.02 LINK ND1 HIS B 133 ZN ZN B 302 1555 1555 2.05 LINK OD2 ASP B 135 CA CA B 303 1555 1555 2.36 LINK OE2 GLU B 138 CA CA B 303 1555 1555 2.37 LINK NE2 HIS B 155 ZN ZN B 301 1555 1555 2.05 LINK NE2 HIS B 159 ZN ZN B 301 1555 1555 2.03 LINK NE2 HIS B 165 ZN ZN B 301 1555 1555 2.03 CISPEP 1 PRO A 122 PRO A 123 0 2.74 CISPEP 2 PRO B 122 PRO B 123 0 1.14 SITE 1 AC1 5 ASP A 25 HIS A 155 HIS A 159 HIS A 165 SITE 2 AC1 5 HOH A 452 SITE 1 AC2 4 HIS A 102 ASP A 104 HIS A 117 HIS A 133 SITE 1 AC3 6 ASP A 109 GLY A 110 THR A 112 ILE A 114 SITE 2 AC3 6 ASP A 135 GLU A 138 SITE 1 AC4 6 PRO A 28 LEU A 29 THR A 30 ASN A 33 SITE 2 AC4 6 TYR A 106 ASN B 34 SITE 1 AC5 8 LYS A 41 TRP A 42 ASN A 43 LYS A 44 SITE 2 AC5 8 LEU A 195 TYR A 196 GOL A 306 ASN B 101 SITE 1 AC6 4 ASP A 194 GLY A 197 GOL A 305 ASN B 101 SITE 1 AC7 4 ASP B 25 HIS B 155 HIS B 159 HIS B 165 SITE 1 AC8 4 HIS B 102 ASP B 104 HIS B 117 HIS B 133 SITE 1 AC9 6 ASP B 109 GLY B 110 THR B 112 ILE B 114 SITE 2 AC9 6 ASP B 135 GLU B 138 CRYST1 36.180 121.690 41.880 90.00 105.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027640 0.000000 0.007541 0.00000 SCALE2 0.000000 0.008218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024750 0.00000