HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-AUG-14 4R4G TITLE CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (YCDA) FROM BACILLUS TITLE 2 SUBTILIS SUBSP. SUBTILIS STR. 168 AT 2.62 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LIPOPROTEIN YCDA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: YCDA, BSU02780; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO DOMAIN PROTEIN, N-TERMINAL DOMAIN HAS IG-LIKE FOLD, BELONGS TO KEYWDS 2 DUF4352 FAMILY (PF11611), C-TERMINAL DOMAIN HAS FOLD: ALPHA(2)- KEYWDS 3 BETA(2)-ALPHA(2)-BETA-ALPHA; DOMAINS CONNECTED BY KINKED-HELIX, KEYWDS 4 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 5 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4R4G 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4R4G 1 JRNL REVDAT 2 22-NOV-17 4R4G 1 REMARK REVDAT 1 17-SEP-14 4R4G 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (YCDA) FROM JRNL TITL 2 BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 AT 2.62 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2756 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2591 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2600 REMARK 3 BIN R VALUE (WORKING SET) : 0.2574 REMARK 3 BIN FREE R VALUE : 0.2875 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.66 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.46450 REMARK 3 B22 (A**2) : -13.46450 REMARK 3 B33 (A**2) : 26.92890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.506 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2586 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3479 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1282 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 89 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 358 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2586 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 346 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2830 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.21 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.12 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|33 - 354} REMARK 3 ORIGIN FOR THE GROUP (A): 1.5638 39.7534 86.9264 REMARK 3 T TENSOR REMARK 3 T11: -0.1615 T22: 0.0414 REMARK 3 T33: -0.1197 T12: 0.0897 REMARK 3 T13: -0.1061 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.6088 L22: 0.5434 REMARK 3 L33: 8.3155 L12: -0.0593 REMARK 3 L13: 2.0175 L23: 0.7999 REMARK 3 S TENSOR REMARK 3 S11: -0.2117 S12: -0.0877 S13: 0.0287 REMARK 3 S21: 0.1853 S22: 0.1074 S23: 0.0081 REMARK 3 S31: -0.4138 S32: -0.3718 S33: 0.1043 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. PEG (PG4) MODELED WERE PRESENT IN CRYSTALLIZATION/ REMARK 3 CRYO CONDITIONS. REMARK 4 REMARK 4 4R4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97971,0.91837,0.97926 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 49.327 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.02300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50.0% POLYETHYLENE GLYCOL 200, 0.1M REMARK 280 TRIS PH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.01200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.00600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.50900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.50300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 162.51500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.01200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.00600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.50300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.50900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 162.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 LYS A 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 TYR A 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 224 OG REMARK 470 SER A 225 OG REMARK 470 TYR A 342 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 80 -63.63 -100.93 REMARK 500 ASN A 191 93.69 -166.13 REMARK 500 TYR A 227 -9.70 -53.86 REMARK 500 ASP A 229 71.39 -111.59 REMARK 500 LYS A 259 -114.23 65.70 REMARK 500 LYS A 290 -75.00 -84.49 REMARK 500 SER A 293 37.63 -76.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-418973 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (30-354) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4R4G A 30 354 UNP O34538 YCDA_BACSU 30 354 SEQADV 4R4G GLY A 0 UNP O34538 EXPRESSION TAG SEQRES 1 A 326 GLY GLU LYS LYS GLU SER GLU THR GLU LYS SER SER ASP SEQRES 2 A 326 ILE ALA GLN VAL LYS ILE LYS ASP VAL SER TYR THR LEU SEQRES 3 A 326 PRO SER LYS TYR ASP LYS SER THR SER ASP ASP GLN LEU SEQRES 4 A 326 VAL LEU LYS VAL ASN VAL ALA VAL LYS ASN THR GLY LYS SEQRES 5 A 326 ASP PRO LEU ASN VAL ASP SER MSE ASP PHE THR LEU TYR SEQRES 6 A 326 GLN GLY ASP THR LYS MSE SER ASP THR ASP PRO GLU ASP SEQRES 7 A 326 TYR SER GLU LYS LEU GLN GLY SER THR ILE ASN ALA ASP SEQRES 8 A 326 LYS SER VAL GLU GLY ASN LEU PHE PHE VAL VAL ASP LYS SEQRES 9 A 326 GLY LYS GLN TYR GLU LEU ASN TYR THR PRO GLU SER TYR SEQRES 10 A 326 GLY ASP LYS LYS PRO LYS SER VAL THR PHE LYS ILE ASP SEQRES 11 A 326 GLY LYS ASP LYS LYS ILE LEU ALA THR ALA ASP LYS LEU SEQRES 12 A 326 GLN ASP SER ALA LYS ALA LEU SER ALA TYR VAL ASP VAL SEQRES 13 A 326 LEU LEU PHE GLY LYS ASP ASN ALA ASP PHE GLU LYS ILE SEQRES 14 A 326 THR GLY ALA ASN LYS ASN GLU ILE VAL ASN ASP PHE ASN SEQRES 15 A 326 GLU SER ALA LYS ASP GLY TYR LEU SER ALA SER GLY LEU SEQRES 16 A 326 SER SER THR TYR ALA ASP SER LYS ALA LEU ASP ASN ILE SEQRES 17 A 326 VAL ASN GLY ILE LYS GLU GLY LEU SER LYS ASN SER SER SEQRES 18 A 326 ILE GLN ALA LYS THR THR SER ILE SER LYS ASP GLU ALA SEQRES 19 A 326 ILE VAL GLU ALA THR VAL LYS PRO VAL ASP ALA SER SER SEQRES 20 A 326 LEU SER ASP ARG ILE GLU ASP LYS VAL LYS ASP TYR TYR SEQRES 21 A 326 SER LYS ASN SER SER ALA SER TYR GLU GLU ALA VAL LYS SEQRES 22 A 326 TYR ALA LEU GLN VAL TYR PRO GLU GLU PHE LYS LYS LEU SEQRES 23 A 326 GLY PRO ALA SER SER GLU LYS THR VAL GLU VAL LYS MSE SEQRES 24 A 326 LYS LYS ASN ASP ILE ASP GLN TRP GLN LEU ASP MSE ASP SEQRES 25 A 326 ASP TYR ARG ALA ALA GLU LEU VAL GLU ALA PHE ILE LYS SEQRES 26 A 326 GLU MODRES 4R4G MSE A 88 MET SELENOMETHIONINE MODRES 4R4G MSE A 99 MET SELENOMETHIONINE MODRES 4R4G MSE A 327 MET SELENOMETHIONINE MODRES 4R4G MSE A 339 MET SELENOMETHIONINE HET MSE A 88 13 HET MSE A 99 8 HET MSE A 327 8 HET MSE A 339 8 HET PG4 A 401 13 HET PG4 A 402 13 HET PG4 A 403 13 HETNAM MSE SELENOMETHIONINE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 PG4 3(C8 H18 O5) FORMUL 5 HOH *33(H2 O) HELIX 1 1 ASP A 86 MSE A 88 5 3 HELIX 2 2 ASP A 106 LYS A 110 5 5 HELIX 3 3 ASP A 147 SER A 152 1 6 HELIX 4 4 ASP A 161 LYS A 170 1 10 HELIX 5 5 GLN A 172 LEU A 186 1 15 HELIX 6 6 ALA A 192 GLY A 199 1 8 HELIX 7 7 ASN A 201 SER A 221 1 21 HELIX 8 8 SER A 224 ASP A 229 5 6 HELIX 9 9 SER A 230 SER A 248 1 19 HELIX 10 10 SER A 275 SER A 289 1 15 HELIX 11 11 SER A 295 LYS A 312 1 18 HELIX 12 12 ASP A 341 ALA A 350 1 10 SHEET 1 A 4 GLU A 37 SER A 39 0 SHEET 2 A 4 GLN A 44 THR A 53 -1 O VAL A 45 N LYS A 38 SHEET 3 A 4 LEU A 67 LYS A 76 -1 O LYS A 70 N SER A 51 SHEET 4 A 4 SER A 121 VAL A 130 -1 O PHE A 128 N LEU A 69 SHEET 1 B 2 LEU A 83 VAL A 85 0 SHEET 2 B 2 SER A 114 ILE A 116 -1 O ILE A 116 N LEU A 83 SHEET 1 C 4 THR A 97 MSE A 99 0 SHEET 2 C 4 PHE A 90 GLN A 94 -1 N GLN A 94 O THR A 97 SHEET 3 C 4 GLN A 135 TYR A 140 -1 O ASN A 139 N THR A 91 SHEET 4 C 4 VAL A 153 ASP A 158 -1 O PHE A 155 N LEU A 138 SHEET 1 D 4 SER A 249 SER A 258 0 SHEET 2 D 4 GLU A 261 LYS A 269 -1 O GLU A 265 N LYS A 253 SHEET 3 D 4 LYS A 321 LYS A 329 -1 O LYS A 321 N VAL A 268 SHEET 4 D 4 TRP A 335 GLN A 336 -1 O GLN A 336 N LYS A 328 SHEET 1 E 2 VAL A 271 ASP A 272 0 SHEET 2 E 2 ILE A 352 LYS A 353 1 O LYS A 353 N VAL A 271 LINK C SER A 87 N MSE A 88 1555 1555 1.38 LINK C MSE A 88 N ASP A 89 1555 1555 1.35 LINK C LYS A 98 N MSE A 99 1555 1555 1.35 LINK C MSE A 99 N SER A 100 1555 1555 1.33 LINK C LYS A 326 N MSE A 327 1555 1555 1.34 LINK C MSE A 327 N LYS A 328 1555 1555 1.34 LINK C ASP A 338 N MSE A 339 1555 1555 1.34 LINK C MSE A 339 N ASP A 340 1555 1555 1.34 SITE 1 AC1 4 TYR A 93 GLU A 137 ASN A 139 LYS A 149 SITE 1 AC2 4 LEU A 54 ASP A 64 LYS A 253 THR A 255 SITE 1 AC3 3 ALA A 213 ILE A 240 VAL A 348 CRYST1 98.653 98.653 195.018 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010137 0.005852 0.000000 0.00000 SCALE2 0.000000 0.011705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005128 0.00000