HEADER RNA 19-AUG-14 4R4P TITLE CRYSTAL STRUCTURE OF THE VS RIBOZYME-A756G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: VS RIBOZYME RNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: NEUROSPORA; SOURCE 4 ORGANISM_TAXID: 5140; SOURCE 5 OTHER_DETAILS: GENERATED BY IN-VITRO TRANSCRIPTION KEYWDS NA, DIMER, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.A.PICCIRILLI,N.B.SUSLOV,S.DASGUPTA,H.HUANG,D.M.J.LILLEY,P.A.RICE REVDAT 3 20-SEP-23 4R4P 1 REMARK LINK REVDAT 2 04-NOV-15 4R4P 1 JRNL REMARK REVDAT 1 30-SEP-15 4R4P 0 JRNL AUTH N.B.SUSLOV,S.DASGUPTA,H.HUANG,J.R.FULLER,D.M.LILLEY, JRNL AUTH 2 P.A.RICE,J.A.PICCIRILLI JRNL TITL CRYSTAL STRUCTURE OF THE VARKUD SATELLITE RIBOZYME. JRNL REF NAT.CHEM.BIOL. V. 11 840 2015 JRNL REFN ISSN 1552-4450 JRNL PMID 26414446 JRNL DOI 10.1038/NCHEMBIO.1929 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 21134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4728 - 7.2069 0.97 1625 159 0.1214 0.1497 REMARK 3 2 7.2069 - 5.7252 1.00 1575 153 0.1979 0.2310 REMARK 3 3 5.7252 - 5.0028 1.00 1551 152 0.2244 0.2432 REMARK 3 4 5.0028 - 4.5461 1.00 1532 149 0.2437 0.2933 REMARK 3 5 4.5461 - 4.2206 0.99 1519 147 0.2790 0.3423 REMARK 3 6 4.2206 - 3.9719 0.96 1460 142 0.2970 0.3196 REMARK 3 7 3.9719 - 3.7731 0.95 1440 141 0.3146 0.4073 REMARK 3 8 3.7731 - 3.6090 0.95 1440 139 0.3562 0.4029 REMARK 3 9 3.6090 - 3.4701 0.94 1414 134 0.3892 0.3959 REMARK 3 10 3.4701 - 3.3504 0.95 1421 136 0.3842 0.4422 REMARK 3 11 3.3504 - 3.2457 0.95 1417 139 0.4106 0.4315 REMARK 3 12 3.2457 - 3.1530 0.95 1417 141 0.4220 0.4616 REMARK 3 13 3.1530 - 3.0700 0.96 1451 140 0.4482 0.4356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4471 REMARK 3 ANGLE : 1.896 6984 REMARK 3 CHIRALITY : 0.076 929 REMARK 3 PLANARITY : 0.011 186 REMARK 3 DIHEDRAL : 16.794 2222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : SINGLE-CRYSTAL SIDE-BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21134 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.070 REMARK 200 RESOLUTION RANGE LOW (A) : 41.469 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: 4R4V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE.2H20, 2M AMMONIUM REMARK 280 SULFATE, 10% 1,3 BUTANEDIOL, PH 5.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.51050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.34000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.26575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.34000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.75525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.34000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 158.26575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.34000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.75525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.51050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 105.51050 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' A A 671 N7 A A 673 2.17 REMARK 500 O2' C A 651 OP1 G A 653 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' A A 639 OP1 G A 749 8555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A A 621 N9 A A 621 C4 -0.041 REMARK 500 U A 719 C2 U A 719 O2 0.054 REMARK 500 A A 762 N9 A A 762 C4 -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 601 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 A A 613 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 A A 621 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 G A 640 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 C A 641 C6 - N1 - C2 ANGL. DEV. = 3.0 DEGREES REMARK 500 G A 643 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 G A 650 N3 - C4 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 G A 650 N1 - C2 - N2 ANGL. DEV. = -5.7 DEGREES REMARK 500 C A 651 C6 - N1 - C2 ANGL. DEV. = 3.0 DEGREES REMARK 500 C A 651 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 A A 652 C2 - N3 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 A A 652 C8 - N9 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 A A 652 N9 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 A A 652 N1 - C6 - N6 ANGL. DEV. = 5.1 DEGREES REMARK 500 G A 654 C6 - C5 - N7 ANGL. DEV. = -3.9 DEGREES REMARK 500 G A 654 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 G A 655 C2 - N3 - C4 ANGL. DEV. = -4.5 DEGREES REMARK 500 G A 655 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 G A 655 C8 - N9 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 G A 655 N9 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 G A 655 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 655 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 C A 658 C6 - N1 - C2 ANGL. DEV. = 3.6 DEGREES REMARK 500 C A 658 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 C A 658 C5 - C6 - N1 ANGL. DEV. = -3.6 DEGREES REMARK 500 C A 660 C6 - N1 - C2 ANGL. DEV. = 3.6 DEGREES REMARK 500 C A 660 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 C A 660 N3 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 C A 660 C5 - C6 - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 A A 661 C8 - N9 - C4 ANGL. DEV. = 2.9 DEGREES REMARK 500 C A 665 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 C A 665 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 G A 670 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 A A 671 C8 - N9 - C4 ANGL. DEV. = 2.6 DEGREES REMARK 500 A A 672 O5' - P - OP2 ANGL. DEV. = -8.8 DEGREES REMARK 500 C A 676 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 G A 680 C2 - N3 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 G A 680 C5 - C6 - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 C A 682 C6 - N1 - C2 ANGL. DEV. = 5.8 DEGREES REMARK 500 C A 682 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 C A 682 C5 - C6 - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 C A 682 N1 - C2 - O2 ANGL. DEV. = 4.0 DEGREES REMARK 500 A A 707 O5' - P - OP1 ANGL. DEV. = -5.8 DEGREES REMARK 500 G A 710 N1 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 G A 714 C8 - N9 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 G A 714 N9 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 G A 714 N1 - C2 - N2 ANGL. DEV. = -6.3 DEGREES REMARK 500 G A 714 N3 - C2 - N2 ANGL. DEV. = 4.8 DEGREES REMARK 500 G A 716 C2 - N3 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 G A 716 N3 - C4 - C5 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 117 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 902 O REMARK 620 2 HOH A 903 O 176.9 REMARK 620 3 HOH A 904 O 88.8 91.0 REMARK 620 4 HOH A 905 O 91.0 86.0 91.8 REMARK 620 5 HOH A 906 O 91.5 91.6 90.2 176.9 REMARK 620 6 HOH A 907 O 90.4 90.0 177.1 91.0 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 908 O REMARK 620 2 HOH A 909 O 177.2 REMARK 620 3 HOH A 910 O 91.1 90.4 REMARK 620 4 HOH A 911 O 91.3 91.2 84.3 REMARK 620 5 HOH A 912 O 87.6 90.0 94.4 178.2 REMARK 620 6 HOH A 913 O 88.5 90.1 177.8 93.6 87.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R4V RELATED DB: PDB DBREF 4R4P A 600 785 PDB 4R4P 4R4P 600 785 SEQRES 1 A 186 GDP G C G C U G U G U C G C SEQRES 2 A 186 A A U C U G C G A A G G G SEQRES 3 A 186 C G U C G U C G G C C C G SEQRES 4 A 186 A G C G G U A G U A A G C SEQRES 5 A 186 A G G G A A C U C A C C U SEQRES 6 A 186 C C A A U G A A A C A C A SEQRES 7 A 186 U U G U C G U A G C A G U SEQRES 8 A 186 U G A C U A C U G U U A U SEQRES 9 A 186 G U G A U U G G U A G A G SEQRES 10 A 186 G C U A A G U G A C G G U SEQRES 11 A 186 A U U G G C G U A A G C C SEQRES 12 A 186 A A U A C C G C G G C A C SEQRES 13 A 186 A G C A C A A G C C C G C SEQRES 14 A 186 U U G C G A G A U U A C A SEQRES 15 A 186 G C G C MODRES 4R4P GDP A 600 G GUANOSINE-5'-DIPHOSPHATE HET GDP A 600 39 HET MG A 801 1 HET MG A 802 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 GDP C10 H15 N5 O11 P2 FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *13(H2 O) LINK O3' GDP A 600 P G A 601 1555 1555 1.61 LINK MG MG A 801 O HOH A 902 1555 1555 2.19 LINK MG MG A 801 O HOH A 903 1555 1555 2.19 LINK MG MG A 801 O HOH A 904 1555 1555 2.20 LINK MG MG A 801 O HOH A 905 1555 1555 2.19 LINK MG MG A 801 O HOH A 906 1555 1555 2.18 LINK MG MG A 801 O HOH A 907 1555 1555 2.19 LINK MG MG A 802 O HOH A 908 1555 1555 2.19 LINK MG MG A 802 O HOH A 909 1555 1555 2.19 LINK MG MG A 802 O HOH A 910 1555 1555 2.18 LINK MG MG A 802 O HOH A 911 1555 1555 2.20 LINK MG MG A 802 O HOH A 912 1555 1555 2.19 LINK MG MG A 802 O HOH A 913 1555 1555 2.20 SITE 1 AC1 6 HOH A 902 HOH A 903 HOH A 904 HOH A 905 SITE 2 AC1 6 HOH A 906 HOH A 907 SITE 1 AC2 6 HOH A 908 HOH A 909 HOH A 910 HOH A 911 SITE 2 AC2 6 HOH A 912 HOH A 913 CRYST1 102.680 102.680 211.021 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004739 0.00000 HETATM 1 PB GDP A 600 -17.728 -54.612 65.082 1.00210.52 P HETATM 2 O1B GDP A 600 -17.555 -53.681 63.933 1.00206.18 O HETATM 3 O2B GDP A 600 -16.486 -55.443 65.192 1.00205.62 O1+ HETATM 4 O3B GDP A 600 -18.934 -55.559 64.803 1.00192.64 O1+ HETATM 5 O3A GDP A 600 -17.941 -53.799 66.416 1.00211.40 O HETATM 6 PA GDP A 600 -19.252 -52.974 66.884 1.00210.21 P HETATM 7 O1A GDP A 600 -18.983 -51.513 66.799 1.00192.03 O HETATM 8 O2A GDP A 600 -19.630 -53.363 68.379 1.00197.59 O1+ HETATM 9 O5' GDP A 600 -20.517 -53.368 65.900 1.00199.05 O HETATM 10 C5' GDP A 600 -20.507 -53.007 64.500 1.00190.29 C HETATM 11 C4' GDP A 600 -21.940 -52.824 63.935 1.00184.85 C HETATM 12 O4' GDP A 600 -22.844 -53.084 64.868 1.00188.37 O HETATM 13 C3' GDP A 600 -22.189 -51.381 63.482 1.00179.28 C HETATM 14 O3' GDP A 600 -22.133 -51.302 62.139 1.00179.09 O HETATM 15 C2' GDP A 600 -23.613 -51.018 64.017 1.00174.42 C HETATM 16 O2' GDP A 600 -24.628 -51.202 62.976 1.00158.76 O HETATM 17 C1' GDP A 600 -23.820 -51.804 65.043 1.00176.92 C HETATM 18 N9 GDP A 600 -23.491 -51.134 66.287 1.00170.08 N HETATM 19 C8 GDP A 600 -22.473 -51.318 67.136 1.00171.58 C HETATM 20 N7 GDP A 600 -22.598 -50.421 68.161 1.00168.50 N HETATM 21 C5 GDP A 600 -23.692 -49.697 67.930 1.00162.93 C HETATM 22 C6 GDP A 600 -24.347 -48.567 68.695 1.00158.59 C HETATM 23 O6 GDP A 600 -23.841 -48.146 69.778 1.00153.70 O HETATM 24 N1 GDP A 600 -25.515 -47.985 68.194 1.00154.51 N HETATM 25 C2 GDP A 600 -26.074 -48.453 66.979 1.00150.49 C HETATM 26 N2 GDP A 600 -27.262 -47.841 66.517 1.00145.98 N HETATM 27 N3 GDP A 600 -25.451 -49.544 66.255 1.00149.99 N HETATM 28 C4 GDP A 600 -24.252 -50.134 66.774 1.00159.54 C HETATM 29 H5' GDP A 600 -20.044 -53.721 63.986 1.00228.34 H HETATM 30 H5'' GDP A 600 -20.005 -52.150 64.387 1.00228.34 H HETATM 31 H4' GDP A 600 -22.072 -53.428 63.177 1.00221.82 H HETATM 32 H3' GDP A 600 -21.530 -50.792 63.874 1.00215.13 H HETATM 33 H2' GDP A 600 -23.618 -50.109 64.308 1.00209.30 H HETATM 34 HO2' GDP A 600 -25.054 -50.401 62.818 1.00190.51 H HETATM 35 H1' GDP A 600 -24.822 -52.116 65.058 1.00212.30 H HETATM 36 H8 GDP A 600 -21.778 -51.962 67.042 1.00205.89 H HETATM 37 HN1 GDP A 600 -25.928 -47.286 68.661 1.00185.42 H HETATM 38 HN21 GDP A 600 -27.656 -47.132 67.010 1.00175.17 H HETATM 39 HN22 GDP A 600 -27.639 -48.117 65.751 1.00175.17 H