HEADER CHAPERONE/CHAPERONE INHIBITOR 21-AUG-14 4R5G TITLE CRYSTAL STRUCTURE OF THE DNAK C-TERMINUS WITH THE INHIBITOR PET-16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINUS OF DNAK; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, GROP, GRPF, SEG, B0014, JW0013; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICAL BUNDLE, BETA SHEETS, CHAPERONE, HSP70/DNAK INHIBITORS, KEYWDS 2 MEMBRANE, CHAPERONE-CHAPERONE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.I.LEU,P.ZHANG,M.E.MURPHY,R.MARMORSTEIN,D.L.GEORGE REVDAT 3 20-SEP-23 4R5G 1 REMARK SEQADV REVDAT 2 03-DEC-14 4R5G 1 JRNL REVDAT 1 10-SEP-14 4R5G 0 JRNL AUTH J.I.LEU,P.ZHANG,M.E.MURPHY,R.MARMORSTEIN,D.L.GEORGE JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF HSP70 AND DNAK JRNL TITL 2 CHAPERONES BY SMALL-MOLECULE TARGETING OF A C-TERMINAL JRNL TITL 3 ALLOSTERIC POCKET. JRNL REF ACS CHEM.BIOL. V. 9 2508 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 25148104 JRNL DOI 10.1021/CB500236Y REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 8148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.286 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.328 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5127 - 4.9742 1.00 2703 126 0.2993 0.3457 REMARK 3 2 4.9742 - 3.9490 1.00 2555 129 0.2540 0.2762 REMARK 3 3 3.9490 - 3.4501 0.99 2496 139 0.3000 0.3758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2859 REMARK 3 ANGLE : 1.081 3915 REMARK 3 CHIRALITY : 0.065 500 REMARK 3 PLANARITY : 0.005 524 REMARK 3 DIHEDRAL : 14.225 899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8281 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DKY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.44400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.88900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.88900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.66600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.88900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.88900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.22200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.88900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.88900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.66600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.88900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.88900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.22200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.44400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE CONFIRMED DIMER BY IDT BUT DO NOT KNOW THE REMARK 300 PROPER ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 45.88900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 45.88900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -34.22200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 389 REMARK 465 LEU A 390 REMARK 465 LEU A 598 REMARK 465 MET A 599 REMARK 465 GLU A 600 REMARK 465 ILE A 601 REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 ALA B 553 REMARK 465 GLY B 554 REMARK 465 ASP B 555 REMARK 465 LYS B 556 REMARK 465 LEU B 557 REMARK 465 PRO B 558 REMARK 465 ALA B 559 REMARK 465 GLU B 579 REMARK 465 ASP B 580 REMARK 465 GLN B 596 REMARK 465 LYS B 597 REMARK 465 LEU B 598 REMARK 465 MET B 599 REMARK 465 GLU B 600 REMARK 465 ILE B 601 REMARK 465 ALA B 602 REMARK 465 GLN B 603 REMARK 465 GLN B 604 REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 378 CG SD CE REMARK 470 HIS A 379 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 380 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 381 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 382 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 ASN A 432 CG OD1 ND2 REMARK 470 ARG A 445 CZ NH1 NH2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 ASP A 460 CG OD1 OD2 REMARK 470 ARG A 467 CG CD NE CZ NH1 NH2 REMARK 470 MET A 469 CG SD CE REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 GLN A 497 CG CD OE1 NE2 REMARK 470 SER A 505 OG REMARK 470 LEU A 507 CG CD1 CD2 REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 470 ASP A 510 CG OD1 OD2 REMARK 470 GLU A 511 CG CD OE1 OE2 REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 ARG A 517 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 470 ASP A 526 CG OD1 OD2 REMARK 470 ARG A 527 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 528 CG CD CE NZ REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 GLU A 531 CG CD OE1 OE2 REMARK 470 GLN A 534 CG CD OE1 NE2 REMARK 470 ARG A 536 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 537 CG OD1 ND2 REMARK 470 GLN A 538 CG CD OE1 NE2 REMARK 470 ASP A 540 CG OD1 OD2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 542 CG CD1 CD2 REMARK 470 LEU A 543 CG CD1 CD2 REMARK 470 HIS A 544 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 546 OG1 CG2 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 GLN A 549 CG CD OE1 NE2 REMARK 470 VAL A 550 CG1 CG2 REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 GLU A 552 CG CD OE1 OE2 REMARK 470 ASP A 555 CG OD1 OD2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 LEU A 557 CG CD1 CD2 REMARK 470 ASP A 561 CG OD1 OD2 REMARK 470 LYS A 562 CG CD CE NZ REMARK 470 THR A 563 OG1 CG2 REMARK 470 GLU A 566 CG CD OE1 OE2 REMARK 470 LEU A 569 CG CD1 CD2 REMARK 470 LEU A 572 CG CD1 CD2 REMARK 470 LEU A 576 CG CD1 CD2 REMARK 470 LYS A 577 CG CD CE NZ REMARK 470 GLU A 579 CG CD OE1 OE2 REMARK 470 ASP A 580 CG OD1 OD2 REMARK 470 LYS A 581 CG CD CE NZ REMARK 470 LYS A 587 CG CD CE NZ REMARK 470 LEU A 591 CG CD1 CD2 REMARK 470 GLN A 596 CG CD OE1 NE2 REMARK 470 LYS A 597 CG CD CE NZ REMARK 470 HIS B 380 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 381 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 386 CG CD OE1 OE2 REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 ASN B 415 CG OD1 ND2 REMARK 470 GLU B 430 CG CD OE1 OE2 REMARK 470 ASN B 432 CG OD1 ND2 REMARK 470 LYS B 446 CG CD CE NZ REMARK 470 ARG B 447 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 452 CG CD CE NZ REMARK 470 ASP B 460 CG OD1 OD2 REMARK 470 MET B 469 CG SD CE REMARK 470 LYS B 489 CG CD CE NZ REMARK 470 LYS B 491 CG CD CE NZ REMARK 470 ASN B 492 CG OD1 ND2 REMARK 470 LYS B 495 CG CD CE NZ REMARK 470 LYS B 498 CG CD CE NZ REMARK 470 GLU B 509 CG CD OE1 OE2 REMARK 470 GLN B 513 CG CD OE1 NE2 REMARK 470 LYS B 514 CG CD CE NZ REMARK 470 MET B 515 CG SD CE REMARK 470 ARG B 517 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 518 CG OD1 OD2 REMARK 470 ASN B 522 CG OD1 ND2 REMARK 470 GLU B 524 CG CD OE1 OE2 REMARK 470 ARG B 527 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 528 CG CD CE NZ REMARK 470 GLU B 530 CG CD OE1 OE2 REMARK 470 GLU B 531 CG CD OE1 OE2 REMARK 470 GLN B 534 CG CD OE1 NE2 REMARK 470 ARG B 536 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 537 CG OD1 ND2 REMARK 470 GLN B 538 CG CD OE1 NE2 REMARK 470 HIS B 541 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 542 CG CD1 CD2 REMARK 470 LEU B 543 CG CD1 CD2 REMARK 470 HIS B 544 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 548 CG CD CE NZ REMARK 470 GLN B 549 CG CD OE1 NE2 REMARK 470 GLU B 552 CG CD OE1 OE2 REMARK 470 ASP B 560 CG OD1 OD2 REMARK 470 LYS B 562 CG CD CE NZ REMARK 470 THR B 563 OG1 CG2 REMARK 470 ILE B 565 CG1 CG2 CD1 REMARK 470 THR B 570 OG1 CG2 REMARK 470 LEU B 572 CG CD1 CD2 REMARK 470 GLU B 573 CG CD OE1 OE2 REMARK 470 THR B 574 OG1 CG2 REMARK 470 LYS B 577 CG CD CE NZ REMARK 470 LYS B 581 CG CD CE NZ REMARK 470 GLU B 585 CG CD OE1 OE2 REMARK 470 LYS B 587 CG CD CE NZ REMARK 470 MET B 588 CG SD CE REMARK 470 GLN B 589 CG CD OE1 NE2 REMARK 470 GLN B 593 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU B 392 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 403 O MET B 404 1.52 REMARK 500 O MET B 404 N GLY B 406 1.91 REMARK 500 O THR B 417 OG1 THR B 420 2.16 REMARK 500 O LEU A 591 OG SER A 595 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 432 -3.57 64.98 REMARK 500 ARG A 445 159.77 176.72 REMARK 500 ARG A 447 76.42 57.10 REMARK 500 ASN A 451 -78.52 -101.79 REMARK 500 LYS A 452 169.67 174.74 REMARK 500 SER A 493 -107.84 57.34 REMARK 500 ALA A 503 -112.72 55.93 REMARK 500 SER A 504 -8.77 86.25 REMARK 500 SER A 505 -71.74 -121.76 REMARK 500 VAL A 550 -68.75 -100.77 REMARK 500 LEU A 557 73.73 56.24 REMARK 500 ASP A 560 -1.07 68.14 REMARK 500 LYS A 562 -70.56 -47.08 REMARK 500 ALA A 564 -70.18 -52.96 REMARK 500 GLU A 573 -71.61 -57.39 REMARK 500 GLN A 596 -70.58 -49.16 REMARK 500 HIS B 379 -15.44 68.71 REMARK 500 HIS B 380 -77.47 -122.74 REMARK 500 HIS B 382 -74.79 -81.42 REMARK 500 HIS B 383 72.40 39.88 REMARK 500 HIS B 384 -178.87 -68.00 REMARK 500 LEU B 390 -74.13 -81.61 REMARK 500 LEU B 391 -75.01 -131.69 REMARK 500 MET B 404 178.68 -14.57 REMARK 500 SER B 434 -123.61 59.49 REMARK 500 LEU B 454 -60.70 -125.16 REMARK 500 ALA B 465 148.52 -176.58 REMARK 500 ALA B 503 -130.77 41.86 REMARK 500 ALA B 523 -115.26 52.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 469 PRO A 470 137.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3JE B 701 DBREF 4R5G A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4R5G B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 SEQADV 4R5G MET A 378 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS A 379 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS A 380 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS A 381 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS A 382 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS A 383 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS A 384 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G ILE A 385 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G GLU A 386 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G GLY A 387 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G ARG A 388 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G MET B 378 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS B 379 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS B 380 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS B 381 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS B 382 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS B 383 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G HIS B 384 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G ILE B 385 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G GLU B 386 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G GLY B 387 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5G ARG B 388 UNP P0A6Y8 EXPRESSION TAG SEQRES 1 A 230 MET HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG VAL LEU SEQRES 2 A 230 LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR SEQRES 3 A 230 MET GLY GLY VAL MET THR THR LEU ILE ALA LYS ASN THR SEQRES 4 A 230 THR ILE PRO THR LYS HIS SER GLN VAL PHE SER THR ALA SEQRES 5 A 230 GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN SEQRES 6 A 230 GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY SEQRES 7 A 230 GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY SEQRES 8 A 230 MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP SEQRES 9 A 230 GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY SEQRES 10 A 230 LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU SEQRES 11 A 230 ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU SEQRES 12 A 230 ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL SEQRES 13 A 230 GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SER THR SEQRES 14 A 230 ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU PRO ALA SEQRES 15 A 230 ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR ALA LEU SEQRES 16 A 230 GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA ILE GLU SEQRES 17 A 230 ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN LYS LEU SEQRES 18 A 230 MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 230 MET HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG VAL LEU SEQRES 2 B 230 LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR SEQRES 3 B 230 MET GLY GLY VAL MET THR THR LEU ILE ALA LYS ASN THR SEQRES 4 B 230 THR ILE PRO THR LYS HIS SER GLN VAL PHE SER THR ALA SEQRES 5 B 230 GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN SEQRES 6 B 230 GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY SEQRES 7 B 230 GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY SEQRES 8 B 230 MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP SEQRES 9 B 230 GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY SEQRES 10 B 230 LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU SEQRES 11 B 230 ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU SEQRES 12 B 230 ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL SEQRES 13 B 230 GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SER THR SEQRES 14 B 230 ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU PRO ALA SEQRES 15 B 230 ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR ALA LEU SEQRES 16 B 230 GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA ILE GLU SEQRES 17 B 230 ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN LYS LEU SEQRES 18 B 230 MET GLU ILE ALA GLN GLN GLN HIS ALA HET 3JE B 701 27 HETNAM 3JE TRIPHENYL(PHENYLETHYNYL)PHOSPHONIUM FORMUL 3 3JE C26 H20 P 1+ FORMUL 4 HOH *(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLU A 552 1 31 HELIX 4 4 ASP A 560 GLY A 578 1 19 HELIX 5 5 ASP A 580 VAL A 594 1 15 HELIX 6 6 MET B 404 GLY B 406 5 3 HELIX 7 7 ASN B 508 ALA B 523 1 16 HELIX 8 8 ALA B 523 GLU B 551 1 29 HELIX 9 9 LYS B 562 GLY B 578 1 17 HELIX 10 10 ALA B 582 VAL B 594 1 13 SHEET 1 A 8 VAL A 407 ILE A 412 0 SHEET 2 A 8 LEU A 399 THR A 403 -1 N THR A 403 O VAL A 407 SHEET 3 A 8 VAL A 436 LEU A 441 -1 O LEU A 441 N GLY A 400 SHEET 4 A 8 GLY A 455 LEU A 459 -1 O PHE A 457 N ILE A 438 SHEET 5 A 8 LYS B 452 LEU B 459 -1 O GLN B 456 N GLN A 456 SHEET 6 A 8 VAL B 436 GLN B 442 -1 N VAL B 436 O LEU B 459 SHEET 7 A 8 LEU B 399 THR B 403 -1 N GLY B 400 O LEU B 441 SHEET 8 A 8 VAL B 407 ILE B 412 -1 O THR B 409 N ILE B 401 SHEET 1 B 8 THR A 420 PHE A 426 0 SHEET 2 B 8 ILE A 472 ILE A 478 -1 O PHE A 476 N HIS A 422 SHEET 3 B 8 LEU A 484 ASP A 490 -1 O HIS A 485 N ASP A 477 SHEET 4 B 8 GLN A 497 ILE A 501 -1 O ILE A 501 N LEU A 484 SHEET 5 B 8 GLU B 496 LYS B 502 -1 O THR B 500 N THR A 500 SHEET 6 B 8 ILE B 483 ASP B 490 -1 N ALA B 488 O GLN B 497 SHEET 7 B 8 ILE B 472 ILE B 478 -1 N THR B 475 O SER B 487 SHEET 8 B 8 THR B 420 PHE B 426 -1 N PHE B 426 O ILE B 472 CISPEP 1 MET A 378 HIS A 379 0 1.21 CISPEP 2 ILE A 418 PRO A 419 0 -7.21 CISPEP 3 ILE B 418 PRO B 419 0 -0.71 CISPEP 4 SER B 505 GLY B 506 0 5.95 CISPEP 5 ASP B 560 ASP B 561 0 -1.31 SITE 1 AC1 7 GLN A 589 LEU B 392 THR B 395 PRO B 396 SITE 2 AC1 7 LEU B 399 ALA B 503 SER B 504 CRYST1 91.778 91.778 136.888 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007305 0.00000