HEADER CHAPERONE 21-AUG-14 4R5J TITLE CRYSTAL STRUCTURE OF THE DNAK C-TERMINUS (DNAK-SBD-A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINUS OF DNAK; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, GROP, GRPF, SEG, B0014, JW0013; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICAL BUNDLE, BETA SHEETS, CHAPERONE, MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR J.I.LEU,P.ZHANG,M.E.MURPHY,R.MARMORSTEIN,D.L.GEORGE REVDAT 3 28-FEB-24 4R5J 1 REMARK SEQADV LINK REVDAT 2 03-DEC-14 4R5J 1 JRNL REVDAT 1 10-SEP-14 4R5J 0 JRNL AUTH J.I.LEU,P.ZHANG,M.E.MURPHY,R.MARMORSTEIN,D.L.GEORGE JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF HSP70 AND DNAK JRNL TITL 2 CHAPERONES BY SMALL-MOLECULE TARGETING OF A C-TERMINAL JRNL TITL 3 ALLOSTERIC POCKET. JRNL REF ACS CHEM.BIOL. V. 9 2508 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 25148104 JRNL DOI 10.1021/CB500236Y REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 34414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2555 - 5.4023 0.97 2712 139 0.1762 0.2038 REMARK 3 2 5.4023 - 4.2891 0.98 2711 168 0.1635 0.2001 REMARK 3 3 4.2891 - 3.7473 0.99 2736 151 0.1817 0.2215 REMARK 3 4 3.7473 - 3.4048 0.99 2735 160 0.2195 0.2617 REMARK 3 5 3.4048 - 3.1608 0.98 2750 133 0.2366 0.2887 REMARK 3 6 3.1608 - 2.9745 0.98 2747 132 0.2616 0.3444 REMARK 3 7 2.9745 - 2.8256 0.98 2765 138 0.2735 0.3141 REMARK 3 8 2.8256 - 2.7026 0.98 2748 132 0.2678 0.3124 REMARK 3 9 2.7026 - 2.5986 0.98 2708 153 0.2600 0.3484 REMARK 3 10 2.5986 - 2.5089 0.98 2717 139 0.2778 0.3179 REMARK 3 11 2.5089 - 2.4305 0.97 2754 149 0.2742 0.3698 REMARK 3 12 2.4305 - 2.3610 0.96 2609 128 0.2855 0.3168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6614 REMARK 3 ANGLE : 1.065 8944 REMARK 3 CHIRALITY : 0.074 1082 REMARK 3 PLANARITY : 0.003 1180 REMARK 3 DIHEDRAL : 13.253 2446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM BROMIDE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -44.65800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 SER A 504 REMARK 465 SER A 505 REMARK 465 GLY A 506 REMARK 465 LEU A 507 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 MET B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 465 ALA B 503 REMARK 465 SER B 504 REMARK 465 SER B 505 REMARK 465 GLY B 506 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 MET C 380 REMARK 465 HIS C 381 REMARK 465 HIS C 382 REMARK 465 HIS C 383 REMARK 465 MET D 380 REMARK 465 HIS D 381 REMARK 465 HIS D 382 REMARK 465 HIS D 383 REMARK 465 GLN D 605 REMARK 465 HIS D 606 REMARK 465 ALA D 607 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 492 CG OD1 ND2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 470 ASP A 510 CG OD1 OD2 REMARK 470 ARG A 527 NE CZ NH1 NH2 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 GLU A 552 CG CD OE1 OE2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 GLU A 566 CG CD OE1 OE2 REMARK 470 LYS B 502 CG CD CE NZ REMARK 470 ASN B 508 CG OD1 ND2 REMARK 470 GLU B 509 CG CD OE1 OE2 REMARK 470 GLU B 511 CG CD OE1 OE2 REMARK 470 ASP B 518 CG OD1 OD2 REMARK 470 GLU B 520 CG CD OE1 OE2 REMARK 470 GLU B 551 CG CD OE1 OE2 REMARK 470 GLU B 552 CG CD OE1 OE2 REMARK 470 ASP B 560 CG OD1 OD2 REMARK 470 ASP B 561 CG OD1 OD2 REMARK 470 GLN B 589 CG CD OE1 NE2 REMARK 470 GLN B 593 CG CD OE1 NE2 REMARK 470 LYS B 597 CG CD CE NZ REMARK 470 GLN B 604 CG CD OE1 NE2 REMARK 470 GLN B 605 CG CD OE1 NE2 REMARK 470 HIS C 384 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 473 CG CD OE1 OE2 REMARK 470 LYS C 502 CG CD CE NZ REMARK 470 ASP C 510 CG OD1 OD2 REMARK 470 GLU C 524 CG CD OE1 OE2 REMARK 470 GLU C 551 CG CD OE1 OE2 REMARK 470 GLU C 552 CG CD OE1 OE2 REMARK 470 LYS C 577 CG CD CE NZ REMARK 470 GLU C 579 CG CD OE1 OE2 REMARK 470 LYS C 597 CG CD CE NZ REMARK 470 GLN C 603 CG CD OE1 NE2 REMARK 470 HIS D 384 CG ND1 CD2 CE1 NE2 REMARK 470 ASP D 481 CG OD1 OD2 REMARK 470 LYS D 502 CG CD CE NZ REMARK 470 GLU D 509 CG CD OE1 OE2 REMARK 470 ASP D 510 CG OD1 OD2 REMARK 470 LYS D 514 CG CD CE NZ REMARK 470 ARG D 517 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 544 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 548 CG CD CE NZ REMARK 470 ASP D 555 CG OD1 OD2 REMARK 470 LYS D 577 CG CD CE NZ REMARK 470 GLN D 589 CG CD OE1 NE2 REMARK 470 GLN D 596 CG CD OE1 NE2 REMARK 470 LYS D 597 CG CD CE NZ REMARK 470 GLN D 603 CG CD OE1 NE2 REMARK 470 GLN D 604 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 561 O HOH D 1028 1.91 REMARK 500 O HOH C 1012 O HOH C 1022 1.96 REMARK 500 NZ LYS D 498 O HOH D 1040 2.04 REMARK 500 O GLU B 430 O HOH B 1003 2.06 REMARK 500 O HOH C 1008 O HOH C 1019 2.07 REMARK 500 OE1 GLN D 538 O HOH D 1041 2.09 REMARK 500 O VAL D 394 O HOH D 1014 2.11 REMARK 500 NE2 GLN D 497 O HOH D 1015 2.12 REMARK 500 O LYS D 502 OG SER D 505 2.17 REMARK 500 OE1 GLU C 444 O HOH C 1021 2.17 REMARK 500 O ILE B 462 O HOH B 1023 2.18 REMARK 500 O ALA D 449 O HOH D 1024 2.19 REMARK 500 OG SER C 504 O HOH C 1028 2.19 REMARK 500 OD2 ASP B 540 O HOH B 1029 2.19 REMARK 500 OG1 THR A 403 O HOH A 1005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS C 587 O LYS D 491 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 393 162.14 171.62 REMARK 500 PRO A 558 -177.11 -66.50 REMARK 500 ALA B 559 -72.98 -74.24 REMARK 500 SER C 504 -3.65 72.46 REMARK 500 ALA C 553 73.71 76.67 REMARK 500 ASP C 555 36.76 77.32 REMARK 500 PRO C 558 -169.21 -65.66 REMARK 500 ASP D 393 161.53 171.49 REMARK 500 SER D 504 -2.59 71.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 555 LYS C 556 136.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 411 O REMARK 620 2 HOH A1012 O 130.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 902 DBREF 4R5J A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4R5J B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4R5J C 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4R5J D 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 SEQADV 4R5J MET A 380 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS A 381 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS A 382 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS A 383 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS A 384 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS A 385 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS A 386 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J ILE A 387 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J GLU A 388 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J MET B 380 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS B 381 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS B 382 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS B 383 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS B 384 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS B 385 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS B 386 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J ILE B 387 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J GLU B 388 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J MET C 380 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS C 381 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS C 382 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS C 383 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS C 384 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS C 385 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS C 386 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J ILE C 387 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J GLU C 388 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J MET D 380 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS D 381 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS D 382 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS D 383 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS D 384 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS D 385 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J HIS D 386 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J ILE D 387 UNP P0A6Y8 EXPRESSION TAG SEQADV 4R5J GLU D 388 UNP P0A6Y8 EXPRESSION TAG SEQRES 1 A 228 MET HIS HIS HIS HIS HIS HIS ILE GLU VAL LEU LEU LEU SEQRES 2 A 228 ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR MET GLY SEQRES 3 A 228 GLY VAL MET THR THR LEU ILE ALA LYS ASN THR THR ILE SEQRES 4 A 228 PRO THR LYS HIS SER GLN VAL PHE SER THR ALA GLU ASP SEQRES 5 A 228 ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN GLY GLU SEQRES 6 A 228 ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY GLN PHE SEQRES 7 A 228 ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY MET PRO SEQRES 8 A 228 GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP GLY ILE SEQRES 9 A 228 LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY LYS GLU SEQRES 10 A 228 GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU ASN GLU SEQRES 11 A 228 ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU ALA ASN SEQRES 12 A 228 ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL GLN THR SEQRES 13 A 228 ARG ASN GLN GLY ASP HIS LEU LEU HIS SER THR ARG LYS SEQRES 14 A 228 GLN VAL GLU GLU ALA GLY ASP LYS LEU PRO ALA ASP ASP SEQRES 15 A 228 LYS THR ALA ILE GLU SER ALA LEU THR ALA LEU GLU THR SEQRES 16 A 228 ALA LEU LYS GLY GLU ASP LYS ALA ALA ILE GLU ALA LYS SEQRES 17 A 228 MET GLN GLU LEU ALA GLN VAL SER GLN LYS LEU MET GLU SEQRES 18 A 228 ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 228 MET HIS HIS HIS HIS HIS HIS ILE GLU VAL LEU LEU LEU SEQRES 2 B 228 ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR MET GLY SEQRES 3 B 228 GLY VAL MET THR THR LEU ILE ALA LYS ASN THR THR ILE SEQRES 4 B 228 PRO THR LYS HIS SER GLN VAL PHE SER THR ALA GLU ASP SEQRES 5 B 228 ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN GLY GLU SEQRES 6 B 228 ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY GLN PHE SEQRES 7 B 228 ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY MET PRO SEQRES 8 B 228 GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP GLY ILE SEQRES 9 B 228 LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY LYS GLU SEQRES 10 B 228 GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU ASN GLU SEQRES 11 B 228 ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU ALA ASN SEQRES 12 B 228 ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL GLN THR SEQRES 13 B 228 ARG ASN GLN GLY ASP HIS LEU LEU HIS SER THR ARG LYS SEQRES 14 B 228 GLN VAL GLU GLU ALA GLY ASP LYS LEU PRO ALA ASP ASP SEQRES 15 B 228 LYS THR ALA ILE GLU SER ALA LEU THR ALA LEU GLU THR SEQRES 16 B 228 ALA LEU LYS GLY GLU ASP LYS ALA ALA ILE GLU ALA LYS SEQRES 17 B 228 MET GLN GLU LEU ALA GLN VAL SER GLN LYS LEU MET GLU SEQRES 18 B 228 ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 228 MET HIS HIS HIS HIS HIS HIS ILE GLU VAL LEU LEU LEU SEQRES 2 C 228 ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR MET GLY SEQRES 3 C 228 GLY VAL MET THR THR LEU ILE ALA LYS ASN THR THR ILE SEQRES 4 C 228 PRO THR LYS HIS SER GLN VAL PHE SER THR ALA GLU ASP SEQRES 5 C 228 ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN GLY GLU SEQRES 6 C 228 ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY GLN PHE SEQRES 7 C 228 ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY MET PRO SEQRES 8 C 228 GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP GLY ILE SEQRES 9 C 228 LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY LYS GLU SEQRES 10 C 228 GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU ASN GLU SEQRES 11 C 228 ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU ALA ASN SEQRES 12 C 228 ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL GLN THR SEQRES 13 C 228 ARG ASN GLN GLY ASP HIS LEU LEU HIS SER THR ARG LYS SEQRES 14 C 228 GLN VAL GLU GLU ALA GLY ASP LYS LEU PRO ALA ASP ASP SEQRES 15 C 228 LYS THR ALA ILE GLU SER ALA LEU THR ALA LEU GLU THR SEQRES 16 C 228 ALA LEU LYS GLY GLU ASP LYS ALA ALA ILE GLU ALA LYS SEQRES 17 C 228 MET GLN GLU LEU ALA GLN VAL SER GLN LYS LEU MET GLU SEQRES 18 C 228 ILE ALA GLN GLN GLN HIS ALA SEQRES 1 D 228 MET HIS HIS HIS HIS HIS HIS ILE GLU VAL LEU LEU LEU SEQRES 2 D 228 ASP VAL THR PRO LEU SER LEU GLY ILE GLU THR MET GLY SEQRES 3 D 228 GLY VAL MET THR THR LEU ILE ALA LYS ASN THR THR ILE SEQRES 4 D 228 PRO THR LYS HIS SER GLN VAL PHE SER THR ALA GLU ASP SEQRES 5 D 228 ASN GLN SER ALA VAL THR ILE HIS VAL LEU GLN GLY GLU SEQRES 6 D 228 ARG LYS ARG ALA ALA ASP ASN LYS SER LEU GLY GLN PHE SEQRES 7 D 228 ASN LEU ASP GLY ILE ASN PRO ALA PRO ARG GLY MET PRO SEQRES 8 D 228 GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASP GLY ILE SEQRES 9 D 228 LEU HIS VAL SER ALA LYS ASP LYS ASN SER GLY LYS GLU SEQRES 10 D 228 GLN LYS ILE THR ILE LYS ALA SER SER GLY LEU ASN GLU SEQRES 11 D 228 ASP GLU ILE GLN LYS MET VAL ARG ASP ALA GLU ALA ASN SEQRES 12 D 228 ALA GLU ALA ASP ARG LYS PHE GLU GLU LEU VAL GLN THR SEQRES 13 D 228 ARG ASN GLN GLY ASP HIS LEU LEU HIS SER THR ARG LYS SEQRES 14 D 228 GLN VAL GLU GLU ALA GLY ASP LYS LEU PRO ALA ASP ASP SEQRES 15 D 228 LYS THR ALA ILE GLU SER ALA LEU THR ALA LEU GLU THR SEQRES 16 D 228 ALA LEU LYS GLY GLU ASP LYS ALA ALA ILE GLU ALA LYS SEQRES 17 D 228 MET GLN GLU LEU ALA GLN VAL SER GLN LYS LEU MET GLU SEQRES 18 D 228 ILE ALA GLN GLN GLN HIS ALA HET CA A 901 1 HET CA B 901 1 HET CA C 901 1 HET PO4 C 902 5 HET CA C 903 1 HET PO4 D 901 5 HET CA D 902 1 HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 5 CA 5(CA 2+) FORMUL 8 PO4 2(O4 P 3-) FORMUL 12 HOH *143(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 GLU A 509 GLU A 552 1 44 HELIX 3 3 PRO A 558 LEU A 576 1 19 HELIX 4 4 ASP A 580 VAL A 594 1 15 HELIX 5 5 SER A 595 GLN A 604 1 10 HELIX 6 6 ARG B 447 ASN B 451 5 5 HELIX 7 7 ASN B 508 ASN B 522 1 15 HELIX 8 8 ASN B 522 GLU B 552 1 31 HELIX 9 9 ALA B 559 LEU B 576 1 18 HELIX 10 10 ASP B 580 VAL B 594 1 15 HELIX 11 11 SER B 595 GLN B 604 1 10 HELIX 12 12 ARG C 447 ASN C 451 5 5 HELIX 13 13 ASN C 508 GLU C 552 1 45 HELIX 14 14 PRO C 558 LEU C 576 1 19 HELIX 15 15 ASP C 580 SER C 595 1 16 HELIX 16 16 SER C 595 ALA C 607 1 13 HELIX 17 17 ARG D 447 ASN D 451 5 5 HELIX 18 18 ASN D 508 ASN D 522 1 15 HELIX 19 19 ASN D 522 GLY D 554 1 33 HELIX 20 20 ASP D 555 LEU D 557 5 3 HELIX 21 21 PRO D 558 LEU D 576 1 19 HELIX 22 22 ASP D 580 VAL D 594 1 15 HELIX 23 23 SER D 595 GLN D 603 1 9 SHEET 1 A 4 ILE A 387 VAL A 389 0 SHEET 2 A 4 THR C 420 THR C 428 -1 O SER C 427 N GLU A 388 SHEET 3 A 4 THR A 420 THR A 428 -1 N SER A 423 O LYS C 421 SHEET 4 A 4 ILE C 387 VAL C 389 -1 O GLU C 388 N SER A 427 SHEET 1 B 8 GLU A 496 ILE A 501 0 SHEET 2 B 8 LEU A 484 ASP A 490 -1 N LEU A 484 O ILE A 501 SHEET 3 B 8 ILE A 472 ILE A 478 -1 N GLU A 473 O LYS A 489 SHEET 4 B 8 THR A 420 THR A 428 -1 N PHE A 426 O ILE A 472 SHEET 5 B 8 THR C 420 THR C 428 -1 O LYS C 421 N SER A 423 SHEET 6 B 8 ILE C 472 ILE C 478 -1 O ILE C 472 N PHE C 426 SHEET 7 B 8 LEU C 484 ASP C 490 -1 O SER C 487 N THR C 475 SHEET 8 B 8 GLU C 496 ILE C 501 -1 O ILE C 501 N LEU C 484 SHEET 1 C 2 ASP A 393 VAL A 394 0 SHEET 2 C 2 THR A 417 ILE A 418 -1 O ILE A 418 N ASP A 393 SHEET 1 D 4 VAL A 407 ILE A 412 0 SHEET 2 D 4 LEU A 399 THR A 403 -1 N LEU A 399 O ILE A 412 SHEET 3 D 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 D 4 LYS A 452 LEU A 459 -1 O PHE A 457 N ILE A 438 SHEET 1 E 4 VAL B 407 ILE B 412 0 SHEET 2 E 4 LEU B 399 THR B 403 -1 N LEU B 399 O ILE B 412 SHEET 3 E 4 VAL B 436 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 E 4 LYS B 452 LEU B 459 -1 O PHE B 457 N ILE B 438 SHEET 1 F 4 THR B 420 PHE B 426 0 SHEET 2 F 4 ILE B 472 ILE B 478 -1 O ILE B 472 N PHE B 426 SHEET 3 F 4 LEU B 484 ASP B 490 -1 O HIS B 485 N ASP B 477 SHEET 4 F 4 GLU B 496 ILE B 501 -1 O ILE B 501 N LEU B 484 SHEET 1 G 4 VAL C 407 ILE C 412 0 SHEET 2 G 4 LEU C 399 THR C 403 -1 N ILE C 401 O THR C 409 SHEET 3 G 4 VAL C 436 GLN C 442 -1 O LEU C 441 N GLY C 400 SHEET 4 G 4 LYS C 452 LEU C 459 -1 O PHE C 457 N ILE C 438 SHEET 1 H 2 ASP D 393 VAL D 394 0 SHEET 2 H 2 THR D 417 ILE D 418 -1 O ILE D 418 N ASP D 393 SHEET 1 I 4 VAL D 407 ILE D 412 0 SHEET 2 I 4 LEU D 399 THR D 403 -1 N LEU D 399 O ILE D 412 SHEET 3 I 4 ALA D 435 GLN D 442 -1 O LEU D 441 N GLY D 400 SHEET 4 I 4 LYS D 452 ASP D 460 -1 O PHE D 457 N ILE D 438 SHEET 1 J 4 THR D 420 PHE D 426 0 SHEET 2 J 4 ILE D 472 ILE D 478 -1 O ILE D 472 N PHE D 426 SHEET 3 J 4 LEU D 484 ASP D 490 -1 O SER D 487 N THR D 475 SHEET 4 J 4 GLU D 496 ILE D 501 -1 O ILE D 501 N LEU D 484 LINK O LEU A 411 CA CA C 903 1555 1555 3.00 LINK CA CA A 901 O HOH A1028 1555 1555 2.58 LINK O HOH A1012 CA CA C 903 1555 1555 2.62 LINK CA CA D 902 O HOH D1018 1555 1555 2.08 CISPEP 1 ILE A 418 PRO A 419 0 -1.79 CISPEP 2 GLY A 554 ASP A 555 0 0.60 CISPEP 3 ILE B 418 PRO B 419 0 -3.01 CISPEP 4 ILE C 418 PRO C 419 0 -2.69 CISPEP 5 ALA C 553 GLY C 554 0 14.54 CISPEP 6 ILE D 418 PRO D 419 0 -0.76 SITE 1 AC1 5 HIS A 386 ILE A 387 HOH A1028 GLU C 402 SITE 2 AC1 5 THR C 403 SITE 1 AC2 4 HIS B 386 ILE B 387 GLU D 402 THR D 403 SITE 1 AC3 3 THR A 403 HIS C 386 ILE C 387 SITE 1 AC4 7 LEU C 399 LEU C 454 GLY C 482 LEU C 484 SITE 2 AC4 7 ILE C 501 LYS C 502 HOH C1016 SITE 1 AC5 4 LEU A 411 HOH A1012 THR C 420 HIS C 422 SITE 1 AC6 4 LEU D 399 LEU D 454 GLY D 482 LEU D 484 SITE 1 AC7 4 GLU B 402 HIS D 386 ILE D 387 HOH D1018 CRYST1 44.658 69.412 75.771 102.12 104.20 92.96 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022392 0.001156 0.006095 0.00000 SCALE2 0.000000 0.014426 0.003409 0.00000 SCALE3 0.000000 0.000000 0.013988 0.00000