HEADER HYDROLASE 22-AUG-14 4R60 TITLE CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XAA-PRO DIPEPTIDASE; COMPND 5 EC: 3.4.13.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS STR. ATCC SOURCE 3 33913; SOURCE 4 ORGANISM_TAXID: 190485; SOURCE 5 GENE: PEPQ, XCC2409; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST50TR KEYWDS XAA-PRO DIPEPTIDASE, PROLIDASE, PEPQ, PITA BREAD, CREATINASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,B.GHOSH,V.N.ARE,S.N.JAMDAR,R.D.MAKDE,S.M.SHARMA REVDAT 3 08-NOV-23 4R60 1 REMARK SEQADV LINK REVDAT 2 20-APR-16 4R60 1 REMARK REVDAT 1 17-SEP-14 4R60 0 JRNL AUTH A.KUMAR,B.GHOSH,V.N.ARE,S.N.JAMDAR,R.D.MAKDE,S.M.SHARMA JRNL TITL CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS JRNL TITL 2 CAMPESTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 88025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4771 - 5.6829 1.00 2990 163 0.1488 0.1654 REMARK 3 2 5.6829 - 4.5119 1.00 2887 153 0.1387 0.1617 REMARK 3 3 4.5119 - 3.9419 1.00 2859 146 0.1425 0.1554 REMARK 3 4 3.9419 - 3.5816 1.00 2837 142 0.1638 0.1638 REMARK 3 5 3.5816 - 3.3250 1.00 2806 157 0.1811 0.1953 REMARK 3 6 3.3250 - 3.1290 1.00 2808 136 0.1883 0.2119 REMARK 3 7 3.1290 - 2.9723 1.00 2818 148 0.1902 0.2267 REMARK 3 8 2.9723 - 2.8430 1.00 2785 145 0.1900 0.2242 REMARK 3 9 2.8430 - 2.7335 1.00 2818 130 0.2040 0.2270 REMARK 3 10 2.7335 - 2.6392 1.00 2788 133 0.1970 0.2545 REMARK 3 11 2.6392 - 2.5567 1.00 2770 157 0.1940 0.2513 REMARK 3 12 2.5567 - 2.4836 1.00 2819 131 0.1932 0.2243 REMARK 3 13 2.4836 - 2.4182 1.00 2782 142 0.1942 0.2228 REMARK 3 14 2.4182 - 2.3592 1.00 2771 149 0.1826 0.2222 REMARK 3 15 2.3592 - 2.3056 1.00 2786 149 0.1826 0.2128 REMARK 3 16 2.3056 - 2.2566 1.00 2754 148 0.1789 0.2171 REMARK 3 17 2.2566 - 2.2114 1.00 2762 147 0.1785 0.1957 REMARK 3 18 2.2114 - 2.1697 1.00 2794 152 0.1768 0.1658 REMARK 3 19 2.1697 - 2.1309 1.00 2757 141 0.1785 0.2526 REMARK 3 20 2.1309 - 2.0948 1.00 2788 129 0.1871 0.2053 REMARK 3 21 2.0948 - 2.0610 1.00 2745 139 0.1821 0.2441 REMARK 3 22 2.0610 - 2.0293 1.00 2755 155 0.1890 0.2105 REMARK 3 23 2.0293 - 1.9995 1.00 2773 137 0.1859 0.2273 REMARK 3 24 1.9995 - 1.9713 1.00 2742 160 0.1868 0.2387 REMARK 3 25 1.9713 - 1.9447 1.00 2774 143 0.1983 0.2420 REMARK 3 26 1.9447 - 1.9194 1.00 2749 142 0.2152 0.2756 REMARK 3 27 1.9194 - 1.8954 1.00 2786 135 0.2306 0.2795 REMARK 3 28 1.8954 - 1.8726 1.00 2739 154 0.2480 0.2818 REMARK 3 29 1.8726 - 1.8508 1.00 2744 135 0.2530 0.2604 REMARK 3 30 1.8508 - 1.8300 0.98 2684 157 0.2673 0.3133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6181 REMARK 3 ANGLE : 1.046 8441 REMARK 3 CHIRALITY : 0.043 941 REMARK 3 PLANARITY : 0.005 1130 REMARK 3 DIHEDRAL : 12.534 2218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 3 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9987 14.0873 -11.5818 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.1663 REMARK 3 T33: 0.1107 T12: 0.0004 REMARK 3 T13: -0.0125 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.3951 L22: 0.6809 REMARK 3 L33: 0.7357 L12: 0.1218 REMARK 3 L13: -0.3812 L23: 0.2103 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: 0.3211 S13: -0.0595 REMARK 3 S21: -0.0658 S22: 0.0176 S23: 0.0218 REMARK 3 S31: 0.0678 S32: -0.0105 S33: 0.0045 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 169 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0676 -2.6474 8.7700 REMARK 3 T TENSOR REMARK 3 T11: 0.2059 T22: 0.1410 REMARK 3 T33: 0.2625 T12: 0.0171 REMARK 3 T13: 0.0328 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.7204 L22: 1.0259 REMARK 3 L33: 1.3575 L12: -0.3965 REMARK 3 L13: -0.3496 L23: 0.1695 REMARK 3 S TENSOR REMARK 3 S11: -0.1385 S12: -0.1013 S13: -0.2603 REMARK 3 S21: 0.1414 S22: 0.0495 S23: 0.1405 REMARK 3 S31: 0.3321 S32: 0.1188 S33: 0.0728 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 314 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2275 8.3256 8.7551 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1158 REMARK 3 T33: 0.1871 T12: 0.0076 REMARK 3 T13: 0.0226 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.7609 L22: 1.1123 REMARK 3 L33: 2.2053 L12: 0.0637 REMARK 3 L13: -0.2737 L23: -0.3289 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.0604 S13: -0.2045 REMARK 3 S21: 0.0068 S22: 0.0129 S23: 0.1092 REMARK 3 S31: 0.1109 S32: 0.0247 S33: 0.0438 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 2 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1435 11.8678 13.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1838 REMARK 3 T33: 0.1064 T12: -0.0158 REMARK 3 T13: -0.0108 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.8596 L22: 0.5823 REMARK 3 L33: 0.8384 L12: -0.2531 REMARK 3 L13: -0.1730 L23: 0.0196 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.2070 S13: -0.0410 REMARK 3 S21: 0.0985 S22: 0.0318 S23: -0.0006 REMARK 3 S31: 0.0653 S32: 0.0480 S33: -0.0373 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 169 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6645 -5.5130 -7.3131 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1845 REMARK 3 T33: 0.2110 T12: 0.0359 REMARK 3 T13: -0.0279 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.4739 L22: 1.0006 REMARK 3 L33: 1.3871 L12: 0.1346 REMARK 3 L13: 0.1334 L23: 0.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.0237 S13: -0.1508 REMARK 3 S21: 0.0542 S22: 0.0220 S23: -0.0531 REMARK 3 S31: 0.1733 S32: 0.0464 S33: -0.0505 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM KH2PO4, 15% GLYCEROL, 12% REMARK 280 PEG8000, PH 5.5, MICROBATCH UNDER-OIL, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.16200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.67600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.75750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.67600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.16200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.75750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 321 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 129 20.02 -153.89 REMARK 500 ASN A 217 64.16 -157.78 REMARK 500 ASP A 262 96.07 -167.64 REMARK 500 ASP A 319 -121.70 53.29 REMARK 500 ALA A 368 -71.46 -98.03 REMARK 500 LEU B 17 44.28 -103.23 REMARK 500 GLN B 22 77.30 -104.44 REMARK 500 HIS B 129 22.32 -143.84 REMARK 500 ASN B 217 60.31 -160.09 REMARK 500 ASP B 262 95.66 -170.29 REMARK 500 ASP B 319 -124.61 54.83 REMARK 500 ALA B 368 -73.93 -114.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD2 REMARK 620 2 ASP A 251 OD1 56.3 REMARK 620 3 ASP A 262 OD1 136.2 81.9 REMARK 620 4 GLU A 374 OE1 110.2 96.7 85.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 110.0 REMARK 620 3 GLU A 360 OE2 172.4 74.1 REMARK 620 4 GLU A 374 OE2 85.6 129.2 86.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 46 OE1 REMARK 620 2 ASP B 155 O 124.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 251 OD1 REMARK 620 2 ASP B 251 OD2 55.5 REMARK 620 3 ASP B 262 OD1 80.9 133.8 REMARK 620 4 GLU B 374 OE1 94.0 107.1 88.7 REMARK 620 5 HOH B 686 O 102.5 83.8 92.6 163.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 262 OD2 REMARK 620 2 HIS B 331 NE2 109.9 REMARK 620 3 GLU B 360 OE2 166.0 74.5 REMARK 620 4 GLU B 374 OE2 80.4 128.8 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 503 O REMARK 620 2 HOH B 562 O 112.5 REMARK 620 3 HOH B 666 O 121.3 93.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 404 DBREF 4R60 A 2 399 UNP Q8P839 Q8P839_XANCP 2 399 DBREF 4R60 B 2 399 UNP Q8P839 Q8P839_XANCP 2 399 SEQADV 4R60 GLY A 0 UNP Q8P839 EXPRESSION TAG SEQADV 4R60 SER A 1 UNP Q8P839 EXPRESSION TAG SEQADV 4R60 GLY B 0 UNP Q8P839 EXPRESSION TAG SEQADV 4R60 SER B 1 UNP Q8P839 EXPRESSION TAG SEQRES 1 A 400 GLY SER SER THR GLN ILE GLY GLY MET SER LEU ASP GLN SEQRES 2 A 400 ALA ARG THR GLN LEU ALA PRO TRP THR GLN ARG ALA ALA SEQRES 3 A 400 PRO ILE GLY ALA ASP GLU TYR GLN GLN ARG ILE GLU ARG SEQRES 4 A 400 ALA ARG VAL LEU MET ARG ALA GLN GLY VAL ASP ALA LEU SEQRES 5 A 400 LEU ILE GLY ALA GLY THR SER LEU ARG TYR PHE SER GLY SEQRES 6 A 400 VAL PRO TRP GLY ALA SER GLU ARG LEU VAL ALA LEU LEU SEQRES 7 A 400 LEU THR THR GLU GLY ASP PRO VAL LEU ILE CYS PRO ALA SEQRES 8 A 400 PHE GLU GLU GLY SER LEU ASP ALA VAL LEU GLN LEU PRO SEQRES 9 A 400 VAL ARG LYS ARG LEU TRP GLU GLU HIS GLU ASP PRO TYR SEQRES 10 A 400 ALA LEU VAL VAL GLN ALA MET ASP GLU GLN HIS ALA HIS SEQRES 11 A 400 ALA LEU ALA LEU ASP PRO GLY ILE ALA PHE ALA VAL HIS SEQRES 12 A 400 THR GLY LEU ARG ALA HIS LEU GLY THR ALA ILE ARG ASP SEQRES 13 A 400 ALA GLY ALA ILE ILE ASP GLY CYS ARG MET CYS LYS SER SEQRES 14 A 400 PRO ALA GLU LEU ALA LEU MET GLN GLN ALA CYS ASP MET SEQRES 15 A 400 THR LEU LEU VAL GLN ARG LEU ALA ALA GLY ILE ALA HIS SEQRES 16 A 400 GLU GLY ILE GLY THR ASP GLN LEU VAL ARG PHE ILE ASP SEQRES 17 A 400 GLU ALA HIS ARG ALA LEU GLY ALA ASP ASN GLY SER THR SEQRES 18 A 400 PHE CYS ILE VAL GLN PHE GLY HIS ALA THR ALA PHE PRO SEQRES 19 A 400 HIS GLY ILE PRO GLY VAL GLN HIS LEU ARG ALA GLY GLU SEQRES 20 A 400 LEU VAL LEU ILE ASP THR GLY CYS THR VAL GLN GLY TYR SEQRES 21 A 400 HIS SER ASP ILE THR ARG THR TRP ILE TYR GLY THR PRO SEQRES 22 A 400 SER ASP ALA GLN GLN ARG ILE TRP GLU LEU GLU LEU ALA SEQRES 23 A 400 ALA GLN ALA ALA ALA PHE ALA ALA VAL ARG PRO GLY VAL SEQRES 24 A 400 ALA CYS GLU ALA VAL ASP GLN ALA ALA ARG ALA VAL LEU SEQRES 25 A 400 GLN ALA ALA GLY LEU GLY PRO ASP TYR ARG LEU PRO GLY SEQRES 26 A 400 LEU PRO HIS ARG THR GLY HIS GLY CYS GLY LEU ALA ILE SEQRES 27 A 400 HIS GLU ALA PRO TYR LEU VAL ARG GLY ASN ARG GLN PRO SEQRES 28 A 400 LEU GLN PRO GLY MET CYS ALA SER ASN GLU PRO MET ILE SEQRES 29 A 400 VAL VAL PRO GLY ALA PHE GLY VAL ARG LEU GLU ASP HIS SEQRES 30 A 400 PHE TYR VAL THR ASP THR GLY ALA GLN TRP PHE THR PRO SEQRES 31 A 400 PRO SER VAL ALA ILE ASP GLN PRO PHE ALA SEQRES 1 B 400 GLY SER SER THR GLN ILE GLY GLY MET SER LEU ASP GLN SEQRES 2 B 400 ALA ARG THR GLN LEU ALA PRO TRP THR GLN ARG ALA ALA SEQRES 3 B 400 PRO ILE GLY ALA ASP GLU TYR GLN GLN ARG ILE GLU ARG SEQRES 4 B 400 ALA ARG VAL LEU MET ARG ALA GLN GLY VAL ASP ALA LEU SEQRES 5 B 400 LEU ILE GLY ALA GLY THR SER LEU ARG TYR PHE SER GLY SEQRES 6 B 400 VAL PRO TRP GLY ALA SER GLU ARG LEU VAL ALA LEU LEU SEQRES 7 B 400 LEU THR THR GLU GLY ASP PRO VAL LEU ILE CYS PRO ALA SEQRES 8 B 400 PHE GLU GLU GLY SER LEU ASP ALA VAL LEU GLN LEU PRO SEQRES 9 B 400 VAL ARG LYS ARG LEU TRP GLU GLU HIS GLU ASP PRO TYR SEQRES 10 B 400 ALA LEU VAL VAL GLN ALA MET ASP GLU GLN HIS ALA HIS SEQRES 11 B 400 ALA LEU ALA LEU ASP PRO GLY ILE ALA PHE ALA VAL HIS SEQRES 12 B 400 THR GLY LEU ARG ALA HIS LEU GLY THR ALA ILE ARG ASP SEQRES 13 B 400 ALA GLY ALA ILE ILE ASP GLY CYS ARG MET CYS LYS SER SEQRES 14 B 400 PRO ALA GLU LEU ALA LEU MET GLN GLN ALA CYS ASP MET SEQRES 15 B 400 THR LEU LEU VAL GLN ARG LEU ALA ALA GLY ILE ALA HIS SEQRES 16 B 400 GLU GLY ILE GLY THR ASP GLN LEU VAL ARG PHE ILE ASP SEQRES 17 B 400 GLU ALA HIS ARG ALA LEU GLY ALA ASP ASN GLY SER THR SEQRES 18 B 400 PHE CYS ILE VAL GLN PHE GLY HIS ALA THR ALA PHE PRO SEQRES 19 B 400 HIS GLY ILE PRO GLY VAL GLN HIS LEU ARG ALA GLY GLU SEQRES 20 B 400 LEU VAL LEU ILE ASP THR GLY CYS THR VAL GLN GLY TYR SEQRES 21 B 400 HIS SER ASP ILE THR ARG THR TRP ILE TYR GLY THR PRO SEQRES 22 B 400 SER ASP ALA GLN GLN ARG ILE TRP GLU LEU GLU LEU ALA SEQRES 23 B 400 ALA GLN ALA ALA ALA PHE ALA ALA VAL ARG PRO GLY VAL SEQRES 24 B 400 ALA CYS GLU ALA VAL ASP GLN ALA ALA ARG ALA VAL LEU SEQRES 25 B 400 GLN ALA ALA GLY LEU GLY PRO ASP TYR ARG LEU PRO GLY SEQRES 26 B 400 LEU PRO HIS ARG THR GLY HIS GLY CYS GLY LEU ALA ILE SEQRES 27 B 400 HIS GLU ALA PRO TYR LEU VAL ARG GLY ASN ARG GLN PRO SEQRES 28 B 400 LEU GLN PRO GLY MET CYS ALA SER ASN GLU PRO MET ILE SEQRES 29 B 400 VAL VAL PRO GLY ALA PHE GLY VAL ARG LEU GLU ASP HIS SEQRES 30 B 400 PHE TYR VAL THR ASP THR GLY ALA GLN TRP PHE THR PRO SEQRES 31 B 400 PRO SER VAL ALA ILE ASP GLN PRO PHE ALA HET PO4 A 401 5 HET MN A 402 1 HET MN A 403 1 HET MN B 401 1 HET MN B 402 1 HET NA B 403 1 HET NA B 404 1 HETNAM PO4 PHOSPHATE ION HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION FORMUL 3 PO4 O4 P 3- FORMUL 4 MN 4(MN 2+) FORMUL 8 NA 2(NA 1+) FORMUL 10 HOH *673(H2 O) HELIX 1 1 SER A 9 THR A 15 1 7 HELIX 2 2 GLY A 28 GLN A 46 1 19 HELIX 3 3 GLY A 56 GLY A 64 1 9 HELIX 4 4 GLU A 92 LEU A 100 1 9 HELIX 5 5 ASP A 114 GLN A 126 1 13 HELIX 6 6 ALA A 138 ALA A 147 1 10 HELIX 7 7 ALA A 156 MET A 165 1 10 HELIX 8 8 SER A 168 ALA A 193 1 26 HELIX 9 9 GLY A 198 GLY A 214 1 17 HELIX 10 10 HIS A 228 PHE A 232 5 5 HELIX 11 11 SER A 273 ALA A 293 1 21 HELIX 12 12 ALA A 299 ALA A 314 1 16 HELIX 13 13 SER B 9 THR B 15 1 7 HELIX 14 14 GLY B 28 GLY B 47 1 20 HELIX 15 15 GLY B 56 GLY B 64 1 9 HELIX 16 16 GLU B 92 LEU B 100 1 9 HELIX 17 17 ASP B 114 GLN B 126 1 13 HELIX 18 18 ALA B 138 ALA B 147 1 10 HELIX 19 19 ALA B 156 MET B 165 1 10 HELIX 20 20 SER B 168 ALA B 193 1 26 HELIX 21 21 GLY B 198 LEU B 213 1 16 HELIX 22 22 HIS B 228 PHE B 232 5 5 HELIX 23 23 SER B 273 ALA B 293 1 21 HELIX 24 24 ALA B 299 ALA B 314 1 16 SHEET 1 A 6 ARG A 105 TRP A 109 0 SHEET 2 A 6 VAL A 85 PRO A 89 1 N LEU A 86 O ARG A 107 SHEET 3 A 6 ALA A 75 THR A 79 -1 N LEU A 77 O VAL A 85 SHEET 4 A 6 ALA A 50 GLY A 54 -1 N ILE A 53 O LEU A 76 SHEET 5 A 6 LEU A 131 LEU A 133 1 O ALA A 132 N LEU A 52 SHEET 6 A 6 ILE A 153 ASP A 155 1 O ARG A 154 N LEU A 133 SHEET 1 B 3 PHE A 221 PHE A 226 0 SHEET 2 B 3 GLU A 246 GLY A 253 -1 O ASP A 251 N ILE A 223 SHEET 3 B 3 ILE A 263 TYR A 269 -1 O TRP A 267 N VAL A 248 SHEET 1 C 2 THR A 255 VAL A 256 0 SHEET 2 C 2 TYR A 259 HIS A 260 -1 O TYR A 259 N VAL A 256 SHEET 1 D 2 GLY A 330 GLY A 332 0 SHEET 2 D 2 GLU A 339 LEU A 343 -1 O LEU A 343 N GLY A 330 SHEET 1 E 3 CYS A 356 ASN A 359 0 SHEET 2 E 3 ASP A 375 VAL A 379 -1 O PHE A 377 N ALA A 357 SHEET 3 E 3 ALA A 384 TRP A 386 -1 O GLN A 385 N TYR A 378 SHEET 1 F 2 ILE A 363 VAL A 365 0 SHEET 2 F 2 PHE A 369 VAL A 371 -1 O PHE A 369 N VAL A 365 SHEET 1 G 6 ARG B 105 TRP B 109 0 SHEET 2 G 6 VAL B 85 PRO B 89 1 N LEU B 86 O ARG B 107 SHEET 3 G 6 ALA B 75 THR B 79 -1 N LEU B 77 O VAL B 85 SHEET 4 G 6 ALA B 50 GLY B 54 -1 N ILE B 53 O LEU B 76 SHEET 5 G 6 LEU B 131 LEU B 133 1 O ALA B 132 N ALA B 50 SHEET 6 G 6 ARG B 154 ASP B 155 1 O ARG B 154 N LEU B 133 SHEET 1 H 3 PHE B 221 PHE B 226 0 SHEET 2 H 3 GLU B 246 GLY B 253 -1 O ASP B 251 N ILE B 223 SHEET 3 H 3 ILE B 263 TYR B 269 -1 O ARG B 265 N ILE B 250 SHEET 1 I 2 THR B 255 VAL B 256 0 SHEET 2 I 2 TYR B 259 HIS B 260 -1 O TYR B 259 N VAL B 256 SHEET 1 J 2 GLY B 330 GLY B 332 0 SHEET 2 J 2 GLU B 339 LEU B 343 -1 O LEU B 343 N GLY B 330 SHEET 1 K 3 CYS B 356 ASN B 359 0 SHEET 2 K 3 ASP B 375 VAL B 379 -1 O PHE B 377 N ALA B 357 SHEET 3 K 3 ALA B 384 TRP B 386 -1 O GLN B 385 N TYR B 378 SHEET 1 L 2 ILE B 363 VAL B 365 0 SHEET 2 L 2 PHE B 369 VAL B 371 -1 O PHE B 369 N VAL B 365 LINK OD2 ASP A 251 MN MN A 402 1555 1555 2.31 LINK OD1 ASP A 251 MN MN A 402 1555 1555 2.36 LINK OD1 ASP A 262 MN MN A 402 1555 1555 1.96 LINK OD2 ASP A 262 MN MN A 403 1555 1555 2.44 LINK NE2 HIS A 331 MN MN A 403 1555 1555 2.38 LINK OE2 GLU A 360 MN MN A 403 1555 1555 2.57 LINK OE1 GLU A 374 MN MN A 402 1555 1555 2.28 LINK OE2 GLU A 374 MN MN A 403 1555 1555 2.16 LINK OE1 GLN B 46 NA NA B 403 1555 1555 2.42 LINK O ASP B 155 NA NA B 403 1555 1555 2.83 LINK OD1 ASP B 251 MN MN B 402 1555 1555 2.36 LINK OD2 ASP B 251 MN MN B 402 1555 1555 2.37 LINK OD2 ASP B 262 MN MN B 401 1555 1555 2.22 LINK OD1 ASP B 262 MN MN B 402 1555 1555 1.99 LINK NE2 HIS B 331 MN MN B 401 1555 1555 2.31 LINK OE2 GLU B 360 MN MN B 401 1555 1555 2.69 LINK OE2 GLU B 374 MN MN B 401 1555 1555 2.10 LINK OE1 GLU B 374 MN MN B 402 1555 1555 2.22 LINK MN MN B 402 O HOH B 686 1555 1555 2.74 LINK NA NA B 404 O HOH B 503 1555 1555 2.57 LINK NA NA B 404 O HOH B 562 1555 1555 3.12 LINK NA NA B 404 O HOH B 666 1555 1555 2.61 CISPEP 1 GLY A 317 PRO A 318 0 -0.02 CISPEP 2 LEU A 322 PRO A 323 0 -1.27 CISPEP 3 ALA A 340 PRO A 341 0 -0.07 CISPEP 4 GLY B 317 PRO B 318 0 1.43 CISPEP 5 LEU B 322 PRO B 323 0 0.06 CISPEP 6 ALA B 340 PRO B 341 0 1.25 SITE 1 AC1 8 HIS A 142 ARG A 146 ALA A 152 ILE A 153 SITE 2 AC1 8 HOH A 506 HOH A 551 HOH A 719 HIS B 142 SITE 1 AC2 5 ASP A 251 ASP A 262 THR A 264 GLU A 374 SITE 2 AC2 5 MN A 403 SITE 1 AC3 5 ASP A 262 HIS A 331 GLU A 360 GLU A 374 SITE 2 AC3 5 MN A 402 SITE 1 AC4 5 ASP B 262 HIS B 331 GLU B 360 GLU B 374 SITE 2 AC4 5 MN B 402 SITE 1 AC5 6 ASP B 251 ASP B 262 THR B 264 GLU B 374 SITE 2 AC5 6 MN B 401 HOH B 686 SITE 1 AC6 6 GLN B 46 ASP B 155 ALA B 156 GLY B 157 SITE 2 AC6 6 ALA B 158 ILE B 159 SITE 1 AC7 3 VAL B 203 HOH B 503 HOH B 666 CRYST1 84.324 105.515 111.352 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011859 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008981 0.00000