HEADER SUGAR BINDING PROTEIN 26-AUG-14 4R6Q TITLE JACALIN-CARBOHYDRATE INTERACTIONS. DISTORTION OF THE LIGAND AS A TITLE 2 DETERMINANT OF AFFINITY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: JACALIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AGGLUTININ BETA-3 CHAIN; COMPND 7 CHAIN: B, D, F, H; COMPND 8 FRAGMENT: UNP RESIDUES 2-20; COMPND 9 SYNONYM: JACALIN BETA-3 CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_COMMON: CAMPEDAK,CHEMPEDAK; SOURCE 4 ORGANISM_TAXID: 3490; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 7 ORGANISM_COMMON: CAMPEDAK,CHEMPEDAK; SOURCE 8 ORGANISM_TAXID: 3490 KEYWDS GALACTOSE SPECIFIC LECTIN, BETA-PRISM I FOLD, POST TRANSLATIONAL KEYWDS 2 PROTEOLYSIS, T-ANTIGEN BINDING PROTEIN, PLANT LECTINS, GALACTOSE, KEYWDS 3 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.V.ABHINAV,K.SHARMA,C.P.SWAMINATHAN,A.SUROLIA,M.VIJAYAN REVDAT 5 08-NOV-23 4R6Q 1 HETSYN LINK REVDAT 4 29-JUL-20 4R6Q 1 COMPND REMARK HETNAM SITE REVDAT 3 04-DEC-19 4R6Q 1 REMARK LINK REVDAT 2 25-FEB-15 4R6Q 1 JRNL REVDAT 1 18-FEB-15 4R6Q 0 JRNL AUTH K.V.ABHINAV,K.SHARMA,C.P.SWAMINATHAN,A.SUROLIA,M.VIJAYAN JRNL TITL JACALIN-CARBOHYDRATE INTERACTIONS: DISTORTION OF THE LIGAND JRNL TITL 2 MOLECULE AS A DETERMINANT OF AFFINITY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 324 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664742 JRNL DOI 10.1107/S139900471402553X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.SANKARANARAYANAN,K.SEKAR,R.BANERJEE,V.SHARMA,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A REMARK 1 TITL 2 MORACEAE PLANT LECTIN WITH A BETA-PRISM FOLD. REMARK 1 REF NAT.STRUCT.BIOL. V. 3 596 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 8673603 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.A.JEYAPRAKASH,P.GEETHA RANI,G.BANUPRAKASH REDDY, REMARK 1 AUTH 2 S.BANUMATHI,C.BETZEL,K.SEKAR,A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURE OF THE JACALIN-T-ANTIGEN COMPLEX AND A REMARK 1 TITL 2 COMPARATIVE STUDY OF LECTIN-T-ANTIGEN COMPLEXES. REMARK 1 REF J.MOL.BIOL. V. 321 637 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12206779 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.A.JEYAPRAKASH,S.KATIYAR,C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL STRUCTURAL BASIS OF THE CARBOHYDRATE SPECIFICITIES OF REMARK 1 TITL 2 JACALIN: AN X-RAY AND MODELING STUDY. REMARK 1 REF J.MOL.BIOL. V. 332 217 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12946359 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.AROCKIA JEYAPRAKASH,G.JAYASHREE,S.K.MAHANTA, REMARK 1 AUTH 2 C.P.SWAMINATHAN,K.SEKAR,A.SUROLIA,M.VIJAYAN REMARK 1 TITL STRUCTURAL BASIS FOR THE ENERGETICS OF JACALIN-SUGAR REMARK 1 TITL 2 INTERACTIONS: PROMISCUITY VERSUS SPECIFICITY. REMARK 1 REF J.MOL.BIOL. V. 347 181 2005 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 15733927 REMARK 1 DOI 10.1016/J.JMB.2005.01.015 REMARK 1 REFERENCE 5 REMARK 1 AUTH Y.BOURNE,C.H.ASTOUL,V.ZAMBONI,W.J.PEUMANS,L.MENU-BOUAOUICHE, REMARK 1 AUTH 2 E.J.VAN DAMME,A.BARRE,P.ROUGE REMARK 1 TITL STRUCTURAL BASIS FOR THE UNUSUAL CARBOHYDRATE-BINDING REMARK 1 TITL 2 SPECIFICITY OF JACALIN TOWARDS GALACTOSE AND MANNOSE. REMARK 1 REF BIOCHEM.J. V. 364 173 2002 REMARK 1 REFN ISSN 0264-6021 REMARK 1 PMID 11988090 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 68998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3656 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 603 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4785 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6502 ; 2.072 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 589 ; 7.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;36.271 ;24.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;12.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.077 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3644 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4R6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000086968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR. REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 60.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 0.1M HEPES, PH 7.4, 10% REMARK 280 (V/V) ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.98000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 2 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 GLU D 2 REMARK 465 LYS D 18 REMARK 465 VAL D 19 REMARK 465 SER D 20 REMARK 465 GLU F 2 REMARK 465 GLN F 3 REMARK 465 VAL F 19 REMARK 465 SER F 20 REMARK 465 GLU H 2 REMARK 465 GLN H 3 REMARK 465 VAL H 19 REMARK 465 SER H 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLN A 42 CG CD OE1 NE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS C 21 CG CD CE NZ REMARK 470 GLU C 22 CG CD OE1 OE2 REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 LYS E 21 CG CD CE NZ REMARK 470 LYS E 91 CG CD CE NZ REMARK 470 LYS G 91 CG CD CE NZ REMARK 470 LYS H 18 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 15 CE2 TRP B 15 CD2 0.075 REMARK 500 TRP C 123 CE2 TRP C 123 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 6.98 -65.71 REMARK 500 THR A 23 -95.35 -126.25 REMARK 500 THR C 23 -94.81 -122.55 REMARK 500 THR E 23 -88.97 -107.99 REMARK 500 THR G 23 -99.73 -126.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JAC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ALPHA-METHYL-D-GALACTOSIDE. REMARK 900 RELATED ID: 1UGW RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH D-GALACTOSIDE. REMARK 900 RELATED ID: 1KU8 RELATED DB: PDB REMARK 900 NATIVE JACALIN STRUCTURE. REMARK 900 RELATED ID: 1M26 RELATED DB: PDB REMARK 900 JACALIN COMPLEXED WITH T-ANTIGEN. REMARK 900 RELATED ID: 1UH0 RELATED DB: PDB REMARK 900 JACALIN COMPLEXED WITH ME-ALPHA-GALNAC. REMARK 900 RELATED ID: 1UGY RELATED DB: PDB REMARK 900 JACALIN COMPLEXED WITH MELLIBIOSE. REMARK 900 RELATED ID: 4R6N RELATED DB: PDB REMARK 900 RELATED ID: 4R6O RELATED DB: PDB REMARK 900 RELATED ID: 4R6P RELATED DB: PDB REMARK 900 RELATED ID: 4R6R RELATED DB: PDB DBREF 4R6Q A 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4R6Q B 2 20 UNP P18673 LECB3_ARTIN 2 20 DBREF 4R6Q C 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4R6Q D 2 20 UNP P18673 LECB3_ARTIN 2 20 DBREF 4R6Q E 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4R6Q F 2 20 UNP P18673 LECB3_ARTIN 2 20 DBREF 4R6Q G 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4R6Q H 2 20 UNP P18673 LECB3_ARTIN 2 20 SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 19 GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO SEQRES 2 B 19 TRP GLY ALA LYS VAL SER SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 19 GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO SEQRES 2 D 19 TRP GLY ALA LYS VAL SER SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 19 GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO SEQRES 2 F 19 TRP GLY ALA LYS VAL SER SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLN ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY ASN VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 ASN LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 19 GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY PRO SEQRES 2 H 19 TRP GLY ALA LYS VAL SER HET NBZ A 201 9 HET GLA A 202 12 HET EDO B 101 4 HET NBZ C 201 9 HET GLA C 202 12 HET EDO C 203 4 HET IPA C 204 4 HET NBZ E 201 9 HET GLA E 202 12 HET IPA E 203 4 HET EDO F 101 4 HET NBZ G 201 9 HET GLA G 202 12 HET EDO G 203 4 HET EDO G 204 4 HET IPA H 101 4 HETNAM NBZ NITROBENZENE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM IPA ISOPROPYL ALCOHOL HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL FORMUL 9 NBZ 4(C6 H5 N O2) FORMUL 10 GLA 4(C6 H12 O6) FORMUL 11 EDO 5(C2 H6 O2) FORMUL 15 IPA 3(C3 H8 O) FORMUL 25 HOH *603(H2 O) SHEET 1 A 8 LYS A 2 ASP A 5 0 SHEET 2 A 8 LEU A 112 ILE A 120 -1 O ILE A 120 N LYS A 2 SHEET 3 A 8 LEU A 124 SER A 132 -1 O TYR A 130 N VAL A 114 SHEET 4 A 8 VAL B 10 GLY B 16 -1 O VAL B 12 N MET A 129 SHEET 5 A 8 THR C 102 ASN C 110 -1 O GLU C 109 N ILE B 11 SHEET 6 A 8 ILE C 65 VAL C 75 -1 N VAL C 68 O LEU C 106 SHEET 7 A 8 TYR C 78 THR C 88 -1 O TYR C 78 N VAL C 75 SHEET 8 A 8 THR C 92 GLY C 97 -1 O TYR C 93 N PHE C 86 SHEET 1 B 4 SER A 37 VAL A 40 0 SHEET 2 B 4 ILE A 25 LEU A 34 -1 N LEU A 34 O SER A 37 SHEET 3 B 4 GLY A 11 TYR A 19 -1 N ASN A 16 O GLN A 29 SHEET 4 B 4 THR A 52 SER A 57 -1 O ILE A 56 N ILE A 15 SHEET 1 C 8 THR A 92 GLY A 97 0 SHEET 2 C 8 TYR A 78 THR A 88 -1 N PHE A 86 O TYR A 93 SHEET 3 C 8 ILE A 65 VAL A 75 -1 N GLU A 67 O LYS A 87 SHEET 4 C 8 THR A 102 ASN A 110 -1 O ILE A 108 N MET A 66 SHEET 5 C 8 VAL D 10 GLY D 16 -1 O ILE D 11 N ASN A 110 SHEET 6 C 8 LEU C 124 SER C 132 -1 N MET C 129 O VAL D 12 SHEET 7 C 8 LEU C 112 ILE C 120 -1 N VAL C 114 O TYR C 130 SHEET 8 C 8 LYS C 2 ASP C 5 -1 N LYS C 2 O ILE C 120 SHEET 1 D 4 SER C 37 HIS C 44 0 SHEET 2 D 4 ILE C 25 LEU C 34 -1 N LEU C 34 O SER C 37 SHEET 3 D 4 GLY C 11 TYR C 19 -1 N ASN C 16 O GLN C 29 SHEET 4 D 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 E 8 LYS E 2 ASP E 5 0 SHEET 2 E 8 LEU E 112 ILE E 120 -1 O GLY E 118 N PHE E 4 SHEET 3 E 8 LEU E 124 SER E 132 -1 O TYR E 130 N VAL E 114 SHEET 4 E 8 VAL F 10 GLY F 16 -1 O VAL F 12 N MET E 129 SHEET 5 E 8 THR G 102 ASN G 110 -1 O PRO G 107 N GLY F 13 SHEET 6 E 8 ILE G 65 VAL G 75 -1 N VAL G 68 O LEU G 106 SHEET 7 E 8 TYR G 78 THR G 88 -1 O LYS G 87 N MET G 66 SHEET 8 E 8 THR G 92 TYR G 96 -1 O TYR G 93 N PHE G 86 SHEET 1 F 4 SER E 37 HIS E 44 0 SHEET 2 F 4 ILE E 25 LEU E 34 -1 N LEU E 34 O SER E 37 SHEET 3 F 4 GLY E 11 TYR E 19 -1 N ASN E 16 O GLN E 29 SHEET 4 F 4 THR E 52 SER E 57 -1 O ILE E 56 N ILE E 15 SHEET 1 G 8 THR E 92 GLY E 97 0 SHEET 2 G 8 TYR E 78 THR E 88 -1 N PHE E 86 O TYR E 93 SHEET 3 G 8 ILE E 65 VAL E 75 -1 N MET E 66 O LYS E 87 SHEET 4 G 8 THR E 102 ASN E 110 -1 O ILE E 108 N MET E 66 SHEET 5 G 8 VAL H 10 GLY H 16 -1 O GLY H 13 N PRO E 107 SHEET 6 G 8 LEU G 124 SER G 132 -1 N MET G 129 O VAL H 12 SHEET 7 G 8 LEU G 112 ILE G 120 -1 N VAL G 114 O TYR G 130 SHEET 8 G 8 LYS G 2 ASP G 5 -1 N PHE G 4 O GLY G 118 SHEET 1 H 4 SER G 37 VAL G 40 0 SHEET 2 H 4 ILE G 25 LEU G 34 -1 N LEU G 34 O SER G 37 SHEET 3 H 4 GLY G 11 TYR G 19 -1 N GLU G 14 O VAL G 31 SHEET 4 H 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19 LINK C3 NBZ A 201 O1 GLA A 202 1555 1555 1.40 LINK C3 NBZ C 201 O1 GLA C 202 1555 1555 1.36 LINK C3 NBZ E 201 O1 GLA E 202 1555 1555 1.35 LINK C3 NBZ G 201 O1 GLA G 202 1555 1555 1.36 CISPEP 1 PHE A 60 PRO A 61 0 7.55 CISPEP 2 GLY A 94 PRO A 95 0 8.01 CISPEP 3 GLY B 13 PRO B 14 0 3.20 CISPEP 4 PHE C 60 PRO C 61 0 -1.21 CISPEP 5 GLY C 94 PRO C 95 0 8.83 CISPEP 6 GLY D 13 PRO D 14 0 9.50 CISPEP 7 PHE E 60 PRO E 61 0 8.87 CISPEP 8 GLY E 94 PRO E 95 0 4.11 CISPEP 9 GLY F 13 PRO F 14 0 9.77 CISPEP 10 PHE G 60 PRO G 61 0 -1.49 CISPEP 11 GLY G 94 PRO G 95 0 8.90 CISPEP 12 GLY H 13 PRO H 14 0 4.99 CRYST1 58.630 81.960 63.310 90.00 107.12 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017056 0.000000 0.005254 0.00000 SCALE2 0.000000 0.012201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016528 0.00000