HEADER TRANSCRIPTION 26-AUG-14 4R6S TITLE CRYSTAL STRUCTURE OF PPARGAMMMA IN COMPLEX WITH SR1663 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 231-505; COMPND 5 SYNONYM: PPAR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1C3, PPARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS NUCLEAR RECEPTOR LIGAND BINDING DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.P.MARCIANO,P.R.GRIFFIN,J.B.BRUNING REVDAT 3 20-SEP-23 4R6S 1 REMARK SEQADV REVDAT 2 22-NOV-17 4R6S 1 REMARK REVDAT 1 01-JUL-15 4R6S 0 JRNL AUTH D.P.MARCIANO,D.S.KURUVILLA,S.V.BOREGOWDA,A.ASTEIAN, JRNL AUTH 2 T.S.HUGHES,R.GARCIA-ORDONEZ,C.A.CORZO,T.M.KHAN,S.J.NOVICK, JRNL AUTH 3 H.PARK,D.J.KOJETIN,D.G.PHINNEY,J.B.BRUNING,T.M.KAMENECKA, JRNL AUTH 4 P.R.GRIFFIN JRNL TITL PHARMACOLOGICAL REPRESSION OF PPAR GAMMA PROMOTES JRNL TITL 2 OSTEOGENESIS. JRNL REF NAT COMMUN V. 6 7443 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26068133 JRNL DOI 10.1038/NCOMMS8443 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 28889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1309 - 4.9548 0.97 2838 137 0.1746 0.2285 REMARK 3 2 4.9548 - 3.9337 1.00 2811 159 0.1515 0.2142 REMARK 3 3 3.9337 - 3.4368 0.96 2689 133 0.1612 0.2147 REMARK 3 4 3.4368 - 3.1227 0.97 2706 157 0.1816 0.2505 REMARK 3 5 3.1227 - 2.8989 0.99 2788 153 0.1957 0.2845 REMARK 3 6 2.8989 - 2.7280 0.99 2770 160 0.1765 0.2459 REMARK 3 7 2.7280 - 2.5914 0.99 2772 144 0.1766 0.2290 REMARK 3 8 2.5914 - 2.4786 0.96 2686 139 0.1891 0.2477 REMARK 3 9 2.4786 - 2.3832 0.96 2674 141 0.1885 0.2603 REMARK 3 10 2.3832 - 2.3010 0.97 2703 129 0.2022 0.2792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4229 REMARK 3 ANGLE : 1.116 5741 REMARK 3 CHIRALITY : 0.069 663 REMARK 3 PLANARITY : 0.004 734 REMARK 3 DIHEDRAL : 14.659 1570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.5733 46.0243 20.3033 REMARK 3 T TENSOR REMARK 3 T11: 0.5772 T22: 0.7843 REMARK 3 T33: 0.6940 T12: 0.0687 REMARK 3 T13: 0.0812 T23: 0.0859 REMARK 3 L TENSOR REMARK 3 L11: 0.4616 L22: 0.0593 REMARK 3 L33: 0.5961 L12: -0.1600 REMARK 3 L13: 0.2145 L23: 0.1030 REMARK 3 S TENSOR REMARK 3 S11: -0.3421 S12: 0.0607 S13: -0.1258 REMARK 3 S21: 0.2307 S22: 0.3240 S23: 0.1440 REMARK 3 S31: 0.0087 S32: -0.8833 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.0012 59.2531 1.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.5946 T22: 0.7420 REMARK 3 T33: 0.5594 T12: -0.0126 REMARK 3 T13: 0.0261 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.4095 L22: 0.1953 REMARK 3 L33: 0.3972 L12: -0.3494 REMARK 3 L13: 0.5202 L23: -0.2621 REMARK 3 S TENSOR REMARK 3 S11: -0.3119 S12: 1.1234 S13: -0.5376 REMARK 3 S21: -0.0499 S22: 0.2388 S23: 0.1577 REMARK 3 S31: -0.2385 S32: -0.3048 S33: -0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.9761 64.1667 19.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.6609 T22: 0.6153 REMARK 3 T33: 0.6285 T12: 0.1060 REMARK 3 T13: -0.0847 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.3393 L22: 1.0897 REMARK 3 L33: 0.6359 L12: 1.3689 REMARK 3 L13: 0.1028 L23: 0.3039 REMARK 3 S TENSOR REMARK 3 S11: -0.2673 S12: -0.1819 S13: 0.2241 REMARK 3 S21: -0.0187 S22: 0.2357 S23: 0.0338 REMARK 3 S31: -0.1655 S32: 0.2710 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 115.0225 59.8172 7.6371 REMARK 3 T TENSOR REMARK 3 T11: 0.6522 T22: 0.9478 REMARK 3 T33: 0.6151 T12: 0.0113 REMARK 3 T13: 0.0278 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.4108 L22: 0.8153 REMARK 3 L33: 0.9376 L12: 0.8013 REMARK 3 L13: -0.3622 L23: -0.4340 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: 0.0071 S13: -0.1497 REMARK 3 S21: 0.0537 S22: 0.0046 S23: -0.1293 REMARK 3 S31: -0.3050 S32: 0.7373 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.7649 45.5368 24.3184 REMARK 3 T TENSOR REMARK 3 T11: 0.5628 T22: 0.6071 REMARK 3 T33: 0.6087 T12: 0.1945 REMARK 3 T13: -0.0224 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.7979 L22: 1.7356 REMARK 3 L33: 0.4785 L12: 0.7098 REMARK 3 L13: 0.4308 L23: -0.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.1649 S13: -0.3882 REMARK 3 S21: 0.0651 S22: 0.1488 S23: -0.0536 REMARK 3 S31: 0.4776 S32: 0.2329 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 115.7560 53.8567 21.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.6910 T22: 0.7749 REMARK 3 T33: 0.8745 T12: 0.1789 REMARK 3 T13: -0.1011 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.5818 L22: -0.0237 REMARK 3 L33: -0.0686 L12: 0.4365 REMARK 3 L13: -0.3940 L23: -0.0895 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.5916 S13: -0.2604 REMARK 3 S21: 0.4610 S22: 0.0827 S23: -0.7016 REMARK 3 S31: 0.1971 S32: 0.4521 S33: 0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.1763 71.3358 25.6304 REMARK 3 T TENSOR REMARK 3 T11: 1.0728 T22: 1.0421 REMARK 3 T33: 0.8078 T12: -0.0165 REMARK 3 T13: 0.0027 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.2452 L22: 0.0909 REMARK 3 L33: 0.0861 L12: 0.1707 REMARK 3 L13: 0.2096 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.8708 S12: -0.7853 S13: 1.3674 REMARK 3 S21: 1.0869 S22: -0.6327 S23: -0.3868 REMARK 3 S31: -1.2061 S32: 0.3957 S33: 0.0007 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.2504 19.8333 27.2607 REMARK 3 T TENSOR REMARK 3 T11: 0.8142 T22: 0.4482 REMARK 3 T33: 0.8694 T12: 0.0984 REMARK 3 T13: -0.0082 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.0788 L22: 0.0048 REMARK 3 L33: 0.0635 L12: -0.0854 REMARK 3 L13: 0.0262 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: 0.6110 S13: -0.8639 REMARK 3 S21: -0.0834 S22: -0.2016 S23: 0.0525 REMARK 3 S31: 0.5385 S32: 0.3793 S33: -0.0010 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.2984 29.4012 48.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.9814 T22: 0.9572 REMARK 3 T33: 0.6433 T12: 0.1910 REMARK 3 T13: 0.0014 T23: 0.1381 REMARK 3 L TENSOR REMARK 3 L11: 0.0408 L22: 0.0495 REMARK 3 L33: 0.1557 L12: -0.0185 REMARK 3 L13: 0.0271 L23: -0.1469 REMARK 3 S TENSOR REMARK 3 S11: 0.4271 S12: -0.6884 S13: -0.7552 REMARK 3 S21: 0.0555 S22: -0.1112 S23: 0.0922 REMARK 3 S31: 0.6110 S32: 0.8354 S33: 0.0014 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 139.0874 36.4255 52.1375 REMARK 3 T TENSOR REMARK 3 T11: 0.9368 T22: 1.2794 REMARK 3 T33: 0.9110 T12: 0.0665 REMARK 3 T13: -0.0708 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: -0.0157 L22: 0.0011 REMARK 3 L33: 0.0201 L12: 0.0175 REMARK 3 L13: -0.0142 L23: 0.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.5296 S12: -1.9192 S13: 0.2930 REMARK 3 S21: 0.4577 S22: -0.1855 S23: 0.7836 REMARK 3 S31: 0.4047 S32: 0.4875 S33: -0.0023 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 133.1866 33.5528 35.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.6083 T22: 0.6479 REMARK 3 T33: 0.5331 T12: 0.1561 REMARK 3 T13: 0.0421 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.2589 L22: 0.0427 REMARK 3 L33: 0.1560 L12: -0.1264 REMARK 3 L13: -0.0869 L23: 0.2372 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: -0.6042 S13: -0.2568 REMARK 3 S21: 0.0016 S22: -0.0861 S23: 0.0497 REMARK 3 S31: -0.0179 S32: -0.1567 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.0300 32.4229 23.0643 REMARK 3 T TENSOR REMARK 3 T11: 0.5834 T22: 0.5523 REMARK 3 T33: 0.6108 T12: 0.1096 REMARK 3 T13: 0.0479 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.1373 L22: 0.2042 REMARK 3 L33: 0.2277 L12: -0.3637 REMARK 3 L13: 0.3141 L23: 0.0729 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: 0.2538 S13: -0.0130 REMARK 3 S21: 0.0611 S22: 0.1522 S23: -0.0120 REMARK 3 S31: 0.0075 S32: 0.2021 S33: -0.0004 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 334 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 124.1594 42.1281 44.7237 REMARK 3 T TENSOR REMARK 3 T11: 0.9406 T22: 0.8015 REMARK 3 T33: 0.6088 T12: 0.1532 REMARK 3 T13: 0.0432 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.7884 L22: 0.2342 REMARK 3 L33: 0.4082 L12: 0.7698 REMARK 3 L13: 0.2379 L23: 0.0549 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.6779 S13: 0.0568 REMARK 3 S21: 0.3841 S22: 0.1208 S23: 0.1265 REMARK 3 S31: -0.6802 S32: 0.0614 S33: -0.0005 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.8532 35.1806 25.7431 REMARK 3 T TENSOR REMARK 3 T11: 0.5252 T22: 0.4971 REMARK 3 T33: 0.5968 T12: 0.1419 REMARK 3 T13: -0.0199 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.9504 L22: 1.6366 REMARK 3 L33: 1.8484 L12: -0.6542 REMARK 3 L13: 0.3653 L23: 0.3145 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.0672 S13: -0.0184 REMARK 3 S21: -0.0191 S22: 0.0078 S23: 0.3744 REMARK 3 S31: -0.2546 S32: -0.2262 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 454 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): 142.8019 44.0885 32.9739 REMARK 3 T TENSOR REMARK 3 T11: 0.9333 T22: 1.4210 REMARK 3 T33: 1.1489 T12: -0.1184 REMARK 3 T13: 0.1738 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 0.0884 L22: 0.1374 REMARK 3 L33: -0.0204 L12: 0.0578 REMARK 3 L13: -0.0799 L23: -0.1594 REMARK 3 S TENSOR REMARK 3 S11: -0.2331 S12: 0.8672 S13: -0.3983 REMARK 3 S21: 0.3443 S22: -0.1403 S23: -0.3997 REMARK 3 S31: 0.7889 S32: 1.9313 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 2Q59 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 0.125M TRIS 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.62050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.62050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -46.62050 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 30.97000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 TYR A 477 REMARK 465 GLN B 203 REMARK 465 LEU B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 ASP B 243 REMARK 465 THR B 268 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 ASP B 475 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 LEU A 204 CG CD1 CD2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 MET A 256 CG SD CE REMARK 470 MET A 257 CG SD CE REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 282 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 ASP B 260 CG OD1 OD2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 ILE B 262 CB CG1 CG2 CD1 REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 PHE B 264 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 ILE B 267 CG1 CG2 CD1 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 LYS B 358 CG CD CE NZ REMARK 470 GLU B 427 CG CD OE1 OE2 REMARK 470 GLN B 454 CG CD OE1 NE2 REMARK 470 LYS B 458 CG CD CE NZ REMARK 470 GLU B 460 CG CD OE1 OE2 REMARK 470 GLN B 470 CG CD OE1 NE2 REMARK 470 LYS B 474 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 639 O HOH B 644 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 393 54.64 -91.86 REMARK 500 GLU A 427 31.32 -93.75 REMARK 500 ASP B 251 -175.89 -174.46 REMARK 500 ILE B 262 -169.47 -111.06 REMARK 500 LYS B 263 61.72 -118.01 REMARK 500 HIS B 266 53.99 -109.46 REMARK 500 LYS B 457 10.02 -69.53 REMARK 500 LYS B 458 -118.74 -85.42 REMARK 500 THR B 459 95.02 24.36 REMARK 500 GLU B 460 23.90 -68.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3K2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3K2 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R2U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PPARGAMMA IN COMPLEX WITH SR1664 DBREF 4R6S A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 4R6S B 203 477 UNP P37231 PPARG_HUMAN 231 505 SEQADV 4R6S PHE A 447 UNP P37231 THR 475 ENGINEERED MUTATION SEQADV 4R6S PHE B 447 UNP P37231 THR 475 ENGINEERED MUTATION SEQRES 1 A 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 A 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 A 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 A 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 A 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 A 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 A 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 A 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 A 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 A 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 A 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 A 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 A 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 A 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 A 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 A 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL PHE GLU HIS SEQRES 20 A 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 A 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 A 275 LEU TYR SEQRES 1 B 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 B 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 B 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 B 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 B 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 B 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 B 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 B 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 B 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 B 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 B 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 B 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 B 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 B 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 B 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 B 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 B 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 B 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 B 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL PHE GLU HIS SEQRES 20 B 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 B 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 B 275 LEU TYR HET 3K2 A 501 41 HET 3K2 B 501 41 HETNAM 3K2 4'-[(2,3-DIMETHYL-5-{[(1R)-1-(4-NITROPHENYL) HETNAM 2 3K2 ETHYL]CARBAMOYL}-1H-INDOL-1-YL)METHYL]BIPHENYL-2- HETNAM 3 3K2 CARBOXYLIC ACID FORMUL 3 3K2 2(C33 H29 N3 O5) FORMUL 5 HOH *116(H2 O) HELIX 1 1 ASN A 205 PHE A 226 1 22 HELIX 2 2 THR A 229 THR A 238 1 10 HELIX 3 3 ASP A 251 ILE A 262 1 12 HELIX 4 4 VAL A 277 SER A 302 1 26 HELIX 5 5 ASP A 310 LEU A 333 1 24 HELIX 6 6 SER A 342 GLY A 344 5 3 HELIX 7 7 ARG A 350 SER A 355 1 6 HELIX 8 8 PRO A 359 PHE A 363 5 5 HELIX 9 9 MET A 364 ALA A 376 1 13 HELIX 10 10 ASP A 380 LEU A 393 1 14 HELIX 11 11 ASN A 402 HIS A 425 1 24 HELIX 12 12 GLN A 430 GLU A 460 1 31 HELIX 13 13 HIS A 466 LYS A 474 1 9 HELIX 14 14 SER B 208 PHE B 226 1 19 HELIX 15 15 THR B 229 GLY B 239 1 11 HELIX 16 16 ASP B 251 ILE B 262 1 12 HELIX 17 17 GLU B 276 SER B 302 1 27 HELIX 18 18 ASP B 310 SER B 332 1 23 HELIX 19 19 SER B 342 GLY B 344 5 3 HELIX 20 20 ARG B 350 SER B 355 1 6 HELIX 21 21 PRO B 359 PHE B 363 5 5 HELIX 22 22 MET B 364 ALA B 376 1 13 HELIX 23 23 ASP B 380 LEU B 393 1 14 HELIX 24 24 ASN B 402 HIS B 425 1 24 HELIX 25 25 GLN B 430 LYS B 457 1 28 HELIX 26 26 PRO B 467 TYR B 473 1 7 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 B 4 PHE B 247 ILE B 249 0 SHEET 2 B 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 B 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 B 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 CISPEP 1 LYS A 358 PRO A 359 0 4.45 CISPEP 2 LYS B 358 PRO B 359 0 3.78 SITE 1 AC1 13 ILE A 281 PHE A 282 CYS A 285 GLN A 286 SITE 2 AC1 13 ARG A 288 SER A 289 TYR A 327 LEU A 330 SITE 3 AC1 13 ILE A 341 SER A 342 HIS A 449 LEU A 453 SITE 4 AC1 13 TYR A 473 SITE 1 AC2 14 PHE B 282 CYS B 285 GLN B 286 ARG B 288 SITE 2 AC2 14 SER B 289 HIS B 323 ILE B 326 TYR B 327 SITE 3 AC2 14 LEU B 330 ILE B 341 SER B 342 LYS B 367 SITE 4 AC2 14 HIS B 449 LEU B 453 CRYST1 93.241 61.940 119.226 90.00 103.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010725 0.000000 0.002563 0.00000 SCALE2 0.000000 0.016145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008624 0.00000