data_4R8J
# 
_entry.id   4R8J 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4R8J         pdb_00004r8j 10.2210/pdb4r8j/pdb 
NDB   NA3215       ?            ?                   
RCSB  RCSB087033   ?            ?                   
WWPDB D_1000087033 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2015-10-28 
2 'Structure model' 1 1 2015-12-02 
3 'Structure model' 1 2 2017-11-22 
4 'Structure model' 1 3 2024-02-28 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'    
2 3 'Structure model' 'Refinement description' 
3 4 'Structure model' 'Data collection'        
4 4 'Structure model' 'Database references'    
5 4 'Structure model' 'Derived calculations'   
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' software               
2 4 'Structure model' chem_comp_atom         
3 4 'Structure model' chem_comp_bond         
4 4 'Structure model' database_2             
5 4 'Structure model' pdbx_struct_conn_angle 
6 4 'Structure model' struct_conn            
7 4 'Structure model' struct_conn_type       
8 4 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  3 'Structure model' '_software.classification'                    
2  3 'Structure model' '_software.name'                              
3  4 'Structure model' '_database_2.pdbx_DOI'                        
4  4 'Structure model' '_database_2.pdbx_database_accession'         
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
17 4 'Structure model' '_pdbx_struct_conn_angle.value'               
18 4 'Structure model' '_struct_conn.conn_type_id'                   
19 4 'Structure model' '_struct_conn.id'                             
20 4 'Structure model' '_struct_conn.pdbx_dist_value'                
21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'         
22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
33 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
34 4 'Structure model' '_struct_conn_type.id'                        
35 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
36 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
37 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4R8J 
_pdbx_database_status.recvd_initial_deposition_date   2014-09-02 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          3QRN 
_pdbx_database_related.details        'Structure of the same system in H2O' 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Hall, J.P.'   1 
'Gurung, S.P.' 2 
'Winter, G.W.' 3 
'Cardin, C.J.' 4 
# 
_citation.id                        primary 
_citation.title                     
'Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy.' 
_citation.journal_abbrev            'Nat Chem' 
_citation.journal_volume            7 
_citation.page_first                961 
_citation.page_last                 967 
_citation.year                      2015 
_citation.journal_id_ASTM           ? 
_citation.country                   UK 
_citation.journal_id_ISSN           1755-4349 
_citation.journal_id_CSD            ? 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   26587711 
_citation.pdbx_database_id_DOI      10.1038/nchem.2369 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Hall, J.P.'       1  ? 
primary 'Poynton, F.E.'    2  ? 
primary 'Keane, P.M.'      3  ? 
primary 'Gurung, S.P.'     4  ? 
primary 'Brazier, J.A.'    5  ? 
primary 'Cardin, D.J.'     6  ? 
primary 'Winter, G.'       7  ? 
primary 'Gunnlaugsson, T.' 8  ? 
primary 'Sazanovich, I.V.' 9  ? 
primary 'Towrie, M.'       10 ? 
primary 'Cardin, C.J.'     11 ? 
primary 'Kelly, J.M.'      12 ? 
primary 'Quinn, S.J.'      13 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*(THM)P*CP*GP*GP*CP*GP*CP*CP*GP*A)-3')
;
2966.013 1  ? ? ? ? 
2 non-polymer syn 'BARIUM ION'                                       137.327  1  ? ? ? ? 
3 non-polymer syn 'Ru(tap)2(dppz) complex'                           747.732  1  ? ? ? ? 
4 non-polymer syn 'CHLORIDE ION'                                     35.453   1  ? ? ? ? 
5 water       nat water                                              18.015   73 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(THM)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' 
_entity_poly.pdbx_seq_one_letter_code_can   XCGGCGCCGA 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'BARIUM ION'             BA  
3 'Ru(tap)2(dppz) complex' RKL 
4 'CHLORIDE ION'           CL  
5 water                    DOD 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  THM n 
1 2  DC  n 
1 3  DG  n 
1 4  DG  n 
1 5  DC  n 
1 6  DG  n 
1 7  DC  n 
1 8  DC  n 
1 9  DG  n 
1 10 DA  n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                'DNA was synthesised by ATDBio in Southampton, UK' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BA  non-polymer               . 'BARIUM ION'                         ?                                   'Ba 2'             
137.327 
CL  non-polymer               . 'CHLORIDE ION'                       ?                                   'Cl -1'            35.453 
DA  'DNA linking'             y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?                                   'C10 H14 N5 O6 P'  
331.222 
DC  'DNA linking'             y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ?                                   'C9 H14 N3 O7 P'   
307.197 
DG  'DNA linking'             y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?                                   'C10 H14 N5 O7 P'  
347.221 
DOD non-polymer               . 'DEUTERATED WATER'                   ?                                   'D2 O'             20.028 
RKL non-polymer               . 'Ru(tap)2(dppz) complex'             ?                                   'C38 H22 N12 Ru 2' 
747.732 
THM 'DNA OH 5 prime terminus' . THYMIDINE                            
;DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE
;
'C10 H14 N2 O5'    242.229 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  THM 1  1  1  THM DT A . n 
A 1 2  DC  2  2  2  DC  DC A . n 
A 1 3  DG  3  3  3  DG  DG A . n 
A 1 4  DG  4  4  4  DG  DG A . n 
A 1 5  DC  5  5  5  DC  DC A . n 
A 1 6  DG  6  6  6  DG  DG A . n 
A 1 7  DC  7  7  7  DC  DC A . n 
A 1 8  DC  8  8  8  DC  DC A . n 
A 1 9  DG  9  9  9  DG  DG A . n 
A 1 10 DA  10 10 10 DA  DA A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 BA  1  101 101 BA  BA  A . 
C 3 RKL 1  102 102 RKL RKL A . 
D 4 CL  1  103 103 CL  CL  A . 
E 5 DOD 1  201 201 DOD DOD A . 
E 5 DOD 2  202 202 DOD DOD A . 
E 5 DOD 3  203 203 DOD DOD A . 
E 5 DOD 4  204 204 DOD DOD A . 
E 5 DOD 5  205 205 DOD DOD A . 
E 5 DOD 6  206 206 DOD DOD A . 
E 5 DOD 7  207 207 DOD DOD A . 
E 5 DOD 8  208 208 DOD DOD A . 
E 5 DOD 9  209 209 DOD DOD A . 
E 5 DOD 10 210 210 DOD DOD A . 
E 5 DOD 11 211 211 DOD DOD A . 
E 5 DOD 12 212 212 DOD DOD A . 
E 5 DOD 13 213 213 DOD DOD A . 
E 5 DOD 14 214 214 DOD DOD A . 
E 5 DOD 15 215 215 DOD DOD A . 
E 5 DOD 16 216 216 DOD DOD A . 
E 5 DOD 17 217 217 DOD DOD A . 
E 5 DOD 18 218 218 DOD DOD A . 
E 5 DOD 19 219 219 DOD DOD A . 
E 5 DOD 20 220 220 DOD DOD A . 
E 5 DOD 21 221 221 DOD DOD A . 
E 5 DOD 22 222 222 DOD DOD A . 
E 5 DOD 23 223 223 DOD DOD A . 
E 5 DOD 24 224 224 DOD DOD A . 
E 5 DOD 25 225 225 DOD DOD A . 
E 5 DOD 26 226 226 DOD DOD A . 
E 5 DOD 27 227 227 DOD DOD A . 
E 5 DOD 28 228 228 DOD DOD A . 
E 5 DOD 29 229 229 DOD DOD A . 
E 5 DOD 30 230 230 DOD DOD A . 
E 5 DOD 31 231 231 DOD DOD A . 
E 5 DOD 32 232 232 DOD DOD A . 
E 5 DOD 33 233 233 DOD DOD A . 
E 5 DOD 34 234 234 DOD DOD A . 
E 5 DOD 35 235 235 DOD DOD A . 
E 5 DOD 36 236 236 DOD DOD A . 
E 5 DOD 37 237 237 DOD DOD A . 
E 5 DOD 38 238 238 DOD DOD A . 
E 5 DOD 39 239 239 DOD DOD A . 
E 5 DOD 40 240 240 DOD DOD A . 
E 5 DOD 41 241 241 DOD DOD A . 
E 5 DOD 42 242 242 DOD DOD A . 
E 5 DOD 43 243 243 DOD DOD A . 
E 5 DOD 44 244 244 DOD DOD A . 
E 5 DOD 45 245 245 DOD DOD A . 
E 5 DOD 46 246 246 DOD DOD A . 
E 5 DOD 47 247 247 DOD DOD A . 
E 5 DOD 48 248 248 DOD DOD A . 
E 5 DOD 49 249 249 DOD DOD A . 
E 5 DOD 50 250 250 DOD DOD A . 
E 5 DOD 51 251 251 DOD DOD A . 
E 5 DOD 52 252 252 DOD DOD A . 
E 5 DOD 53 253 253 DOD DOD A . 
E 5 DOD 54 254 254 DOD DOD A . 
E 5 DOD 55 255 255 DOD DOD A . 
E 5 DOD 56 256 256 DOD DOD A . 
E 5 DOD 57 257 257 DOD DOD A . 
E 5 DOD 58 258 258 DOD DOD A . 
E 5 DOD 59 259 259 DOD DOD A . 
E 5 DOD 60 260 260 DOD DOD A . 
E 5 DOD 61 261 261 DOD DOD A . 
E 5 DOD 62 262 262 DOD DOD A . 
E 5 DOD 63 263 263 DOD DOD A . 
E 5 DOD 64 264 264 DOD DOD A . 
E 5 DOD 65 265 265 DOD DOD A . 
E 5 DOD 66 266 266 DOD DOD A . 
E 5 DOD 67 267 267 DOD DOD A . 
E 5 DOD 68 268 268 DOD DOD A . 
E 5 DOD 69 269 269 DOD DOD A . 
E 5 DOD 70 270 270 DOD DOD A . 
E 5 DOD 71 271 271 DOD DOD A . 
E 5 DOD 72 272 272 DOD DOD A . 
E 5 DOD 73 273 273 DOD DOD A . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
GDA     'data collection' .        ? 1 
SHELXCD phasing           .        ? 2 
REFMAC  refinement        5.8.0073 ? 3 
XDS     'data reduction'  .        ? 4 
SCALA   'data scaling'    .        ? 5 
SHELXE  'model building'  .        ? 6 
# 
_cell.entry_id           4R8J 
_cell.length_a           42.370 
_cell.length_b           42.370 
_cell.length_c           39.420 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4R8J 
_symmetry.space_group_name_H-M             'P 43 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                96 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          4R8J 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.90 
_exptl_crystal.density_percent_sol   57.65 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          ? 
_exptl_crystal_grow.temp            291 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6 
_exptl_crystal_grow.pdbx_pH_range   ? 
_exptl_crystal_grow.pdbx_details    
;The drops contained 1  l of 2mM oligonuclotide, 1  l of 4mM rac   [Ru(TAP)2(dppz)]Cl2 and 6  l of the following solution; 10% (vol/vol) MPD, 40 mM sodium cacodylate (pH 6.0), 12mM spermine tetra-HCl, 80mM sodium chloride and 20 mM barium chloride. The drop was equilibrated against 1ml of 35% (vol/vol) 2-methyl-2,4-pentanediol (MPD) in H2O , VAPOR DIFFUSION, SITTING DROP, temperature 291K
;
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               PIXEL 
_diffrn_detector.type                   'PSI PILATUS 6M' 
_diffrn_detector.pdbx_collection_date   2014-08-14 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'DUAL SI(111)' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.8266 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'DIAMOND BEAMLINE I03' 
_diffrn_source.pdbx_synchrotron_site       Diamond 
_diffrn_source.pdbx_synchrotron_beamline   I03 
_diffrn_source.pdbx_wavelength             0.8266 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.entry_id                     4R8J 
_reflns.observed_criterion_sigma_I   -3.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             18.660 
_reflns.d_resolution_high            1.210 
_reflns.number_obs                   11471 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         99.9 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
# 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.entry_id                                 4R8J 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.ls_number_reflns_obs                     10864 
_refine.ls_number_reflns_all                     11471 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             18.66 
_refine.ls_d_res_high                            1.21 
_refine.ls_percent_reflns_obs                    99.9 
_refine.ls_R_factor_obs                          0.110 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.109 
_refine.ls_R_factor_R_free                       0.125 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5.000 
_refine.ls_number_reflns_R_free                  568 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.987 
_refine.correlation_coeff_Fo_to_Fc_free          0.984 
_refine.B_iso_mean                               22.51 
_refine.aniso_B[1][1]                            -0.41000 
_refine.aniso_B[2][2]                            -0.41000 
_refine.aniso_B[3][3]                            0.82000 
_refine.aniso_B[1][2]                            0.00000 
_refine.aniso_B[1][3]                            0.00000 
_refine.aniso_B[2][3]                            -0.00000 
_refine.solvent_model_details                    MASK 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          SAD 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.027 
_refine.pdbx_overall_ESU_R_Free                  0.027 
_refine.overall_SU_ML                            0.021 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             1.042 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   202 
_refine_hist.pdbx_number_atoms_ligand         53 
_refine_hist.number_atoms_solvent             73 
_refine_hist.number_atoms_total               328 
_refine_hist.d_res_high                       1.21 
_refine_hist.d_res_low                        18.66 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d             0.016  0.013  ? 290 'X-RAY DIFFRACTION' ? 
r_bond_other_d               0.006  0.020  ? 134 'X-RAY DIFFRACTION' ? 
r_angle_refined_deg          2.592  1.598  ? 456 'X-RAY DIFFRACTION' ? 
r_angle_other_deg            3.753  3.000  ? 308 'X-RAY DIFFRACTION' ? 
r_dihedral_angle_1_deg       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_2_deg       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_3_deg       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_dihedral_angle_4_deg       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_chiral_restr               0.103  0.200  ? 30  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined         0.032  0.020  ? 176 'X-RAY DIFFRACTION' ? 
r_gen_planes_other           0.005  0.020  ? 78  'X-RAY DIFFRACTION' ? 
r_nbd_refined                ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbd_other                  ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbtor_refined              ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_nbtor_other                ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined        ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_other          ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_metal_ion_refined          ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_metal_ion_other            ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other         ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined     ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_other       ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_refined ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_symmetry_metal_ion_other   ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcbond_it                  ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcbond_other               ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcangle_it                 ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_mcangle_other              ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_scbond_it                  2.514  2.002  ? 290 'X-RAY DIFFRACTION' ? 
r_scbond_other               2.510  8.549  ? 291 'X-RAY DIFFRACTION' ? 
r_scangle_it                 ?      ?      ? ?   'X-RAY DIFFRACTION' ? 
r_scangle_other              3.408  34.236 ? 457 'X-RAY DIFFRACTION' ? 
r_long_range_B_refined       3.383  22.245 ? 685 'X-RAY DIFFRACTION' ? 
r_long_range_B_other         3.065  21.665 ? 649 'X-RAY DIFFRACTION' ? 
r_rigid_bond_restr           5.669  3.000  ? 290 'X-RAY DIFFRACTION' ? 
r_sphericity_free            28.452 5.000  ? 14  'X-RAY DIFFRACTION' ? 
r_sphericity_bonded          14.099 5.000  ? 315 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.21 
_refine_ls_shell.d_res_low                        1.24 
_refine_ls_shell.number_reflns_R_work             765 
_refine_ls_shell.R_factor_R_work                  0.2120 
_refine_ls_shell.percent_reflns_obs               100.00 
_refine_ls_shell.R_factor_R_free                  0.2160 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             49 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.number_reflns_obs                ? 
# 
_database_PDB_matrix.entry_id          4R8J 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  4R8J 
_struct.title                     'd(TCGGCGCCGA) with lambda-[Ru(TAP)2(dppz)]2+ soaked in D2O' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4R8J 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'DNA kinking, Infra-red, Ruthenium, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
E N N 5 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4R8J 
_struct_ref.pdbx_db_accession          4R8J 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   TCGGCGCCGA 
_struct_ref.pdbx_db_isoform            ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              4R8J 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 10 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             4R8J 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  10 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       10 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z  1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000 
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale one ? A THM 1 "O3'" ? ? ? 1_555 A DC  2 P  ? ? A THM 1   A DC  2   1_555 ? ? ? ? ? ? ?            1.607 ? ? 
metalc1  metalc ?   ? A DG  4 O6    ? ? ? 1_555 B BA  . BA ? ? A DG  4   A BA  101 1_555 ? ? ? ? ? ? ?            2.898 ? ? 
metalc2  metalc ?   ? B BA  . BA    ? ? ? 1_555 E DOD . O  ? ? A BA  101 A DOD 201 1_555 ? ? ? ? ? ? ?            2.815 ? ? 
metalc3  metalc ?   ? B BA  . BA    ? ? ? 1_555 E DOD . O  ? ? A BA  101 A DOD 202 1_555 ? ? ? ? ? ? ?            2.814 ? ? 
metalc4  metalc ?   ? B BA  . BA    ? ? ? 1_555 E DOD . O  ? ? A BA  101 A DOD 203 1_555 ? ? ? ? ? ? ?            2.736 ? ? 
metalc5  metalc ?   ? B BA  . BA    ? ? ? 1_555 E DOD . O  ? ? A BA  101 A DOD 204 1_555 ? ? ? ? ? ? ?            2.847 ? ? 
metalc6  metalc ?   ? B BA  . BA    ? ? ? 1_555 E DOD . O  ? ? A BA  101 A DOD 205 1_555 ? ? ? ? ? ? ?            2.874 ? ? 
metalc7  metalc ?   ? B BA  . BA    ? ? ? 1_555 E DOD . O  ? ? A BA  101 A DOD 206 1_555 ? ? ? ? ? ? ?            2.809 ? ? 
hydrog1  hydrog ?   ? A DC  2 N3    ? ? ? 1_555 A DG  9 N1 ? ? A DC  2   A DG  9   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?   ? A DC  2 N4    ? ? ? 1_555 A DG  9 O6 ? ? A DC  2   A DG  9   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?   ? A DC  2 O2    ? ? ? 1_555 A DG  9 N2 ? ? A DC  2   A DG  9   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?   ? A DG  3 N1    ? ? ? 1_555 A DC  8 N3 ? ? A DG  3   A DC  8   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?   ? A DG  3 N2    ? ? ? 1_555 A DC  8 O2 ? ? A DG  3   A DC  8   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?   ? A DG  3 O6    ? ? ? 1_555 A DC  8 N4 ? ? A DG  3   A DC  8   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?   ? A DG  4 N1    ? ? ? 1_555 A DC  7 N3 ? ? A DG  4   A DC  7   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?   ? A DG  4 N2    ? ? ? 1_555 A DC  7 O2 ? ? A DG  4   A DC  7   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?   ? A DG  4 O6    ? ? ? 1_555 A DC  7 N4 ? ? A DG  4   A DC  7   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?   ? A DC  5 N3    ? ? ? 1_555 A DG  6 N1 ? ? A DC  5   A DG  6   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?   ? A DC  5 N4    ? ? ? 1_555 A DG  6 O6 ? ? A DC  5   A DG  6   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?   ? A DC  5 O2    ? ? ? 1_555 A DG  6 N2 ? ? A DC  5   A DG  6   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?   ? A DG  6 N1    ? ? ? 1_555 A DC  5 N3 ? ? A DG  6   A DC  5   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?   ? A DG  6 N2    ? ? ? 1_555 A DC  5 O2 ? ? A DG  6   A DC  5   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?   ? A DG  6 O6    ? ? ? 1_555 A DC  5 N4 ? ? A DG  6   A DC  5   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?   ? A DC  7 N3    ? ? ? 1_555 A DG  4 N1 ? ? A DC  7   A DG  4   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?   ? A DC  7 N4    ? ? ? 1_555 A DG  4 O6 ? ? A DC  7   A DG  4   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?   ? A DC  7 O2    ? ? ? 1_555 A DG  4 N2 ? ? A DC  7   A DG  4   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?   ? A DC  8 N3    ? ? ? 1_555 A DG  3 N1 ? ? A DC  8   A DG  3   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?   ? A DC  8 N4    ? ? ? 1_555 A DG  3 O6 ? ? A DC  8   A DG  3   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?   ? A DC  8 O2    ? ? ? 1_555 A DG  3 N2 ? ? A DC  8   A DG  3   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?   ? A DG  9 N1    ? ? ? 1_555 A DC  2 N3 ? ? A DG  9   A DC  2   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?   ? A DG  9 N2    ? ? ? 1_555 A DC  2 O2 ? ? A DG  9   A DC  2   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?   ? A DG  9 O6    ? ? ? 1_555 A DC  2 N4 ? ? A DG  9   A DC  2   7_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 201 ? 1_555 126.6 ? 
2  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 202 ? 1_555 136.9 ? 
3  O  ? E DOD . ? A DOD 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 202 ? 1_555 68.8  ? 
4  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 203 ? 1_555 69.6  ? 
5  O  ? E DOD . ? A DOD 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 203 ? 1_555 139.2 ? 
6  O  ? E DOD . ? A DOD 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 203 ? 1_555 75.9  ? 
7  O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 204 ? 1_555 63.0  ? 
8  O  ? E DOD . ? A DOD 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 204 ? 1_555 135.1 ? 
9  O  ? E DOD . ? A DOD 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 204 ? 1_555 139.3 ? 
10 O  ? E DOD . ? A DOD 203 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 204 ? 1_555 85.4  ? 
11 O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 205 ? 1_555 111.8 ? 
12 O  ? E DOD . ? A DOD 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 205 ? 1_555 65.2  ? 
13 O  ? E DOD . ? A DOD 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 205 ? 1_555 111.0 ? 
14 O  ? E DOD . ? A DOD 203 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 205 ? 1_555 150.7 ? 
15 O  ? E DOD . ? A DOD 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 205 ? 1_555 70.9  ? 
16 O6 ? A DG  4 ? A DG  4   ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 206 ? 1_555 119.7 ? 
17 O  ? E DOD . ? A DOD 201 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 206 ? 1_555 112.6 ? 
18 O  ? E DOD . ? A DOD 202 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 206 ? 1_555 72.1  ? 
19 O  ? E DOD . ? A DOD 203 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 206 ? 1_555 73.7  ? 
20 O  ? E DOD . ? A DOD 204 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 206 ? 1_555 68.0  ? 
21 O  ? E DOD . ? A DOD 205 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? E DOD . ? A DOD 206 ? 1_555 81.3  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A BA  101 ? 8  'BINDING SITE FOR RESIDUE BA A 101'  
AC2 Software A RKL 102 ? 13 'BINDING SITE FOR RESIDUE RKL A 102' 
AC3 Software A CL  103 ? 4  'BINDING SITE FOR RESIDUE CL A 103'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 8  DG  A 3  ? DG  A 3   . ? 1_555 ? 
2  AC1 8  DG  A 4  ? DG  A 4   . ? 1_555 ? 
3  AC1 8  DOD E .  ? DOD A 201 . ? 1_555 ? 
4  AC1 8  DOD E .  ? DOD A 202 . ? 1_555 ? 
5  AC1 8  DOD E .  ? DOD A 203 . ? 1_555 ? 
6  AC1 8  DOD E .  ? DOD A 204 . ? 1_555 ? 
7  AC1 8  DOD E .  ? DOD A 205 . ? 1_555 ? 
8  AC1 8  DOD E .  ? DOD A 206 . ? 1_555 ? 
9  AC2 13 THM A 1  ? THM A 1   . ? 7_555 ? 
10 AC2 13 DC  A 2  ? DC  A 2   . ? 7_555 ? 
11 AC2 13 DG  A 3  ? DG  A 3   . ? 5_554 ? 
12 AC2 13 DG  A 3  ? DG  A 3   . ? 7_555 ? 
13 AC2 13 DG  A 4  ? DG  A 4   . ? 5_554 ? 
14 AC2 13 DC  A 5  ? DC  A 5   . ? 5_554 ? 
15 AC2 13 DC  A 7  ? DC  A 7   . ? 3_554 ? 
16 AC2 13 DC  A 8  ? DC  A 8   . ? 3_554 ? 
17 AC2 13 DG  A 9  ? DG  A 9   . ? 1_555 ? 
18 AC2 13 DA  A 10 ? DA  A 10  . ? 3_554 ? 
19 AC2 13 CL  D .  ? CL  A 103 . ? 1_555 ? 
20 AC2 13 DOD E .  ? DOD A 207 . ? 3_554 ? 
21 AC2 13 DOD E .  ? DOD A 239 . ? 4_455 ? 
22 AC3 4  DG  A 4  ? DG  A 4   . ? 5_554 ? 
23 AC3 4  DC  A 5  ? DC  A 5   . ? 5_554 ? 
24 AC3 4  RKL C .  ? RKL A 102 . ? 1_555 ? 
25 AC3 4  DOD E .  ? DOD A 212 . ? 1_555 ? 
# 
_pdbx_validate_rmsd_angle.id                         1 
_pdbx_validate_rmsd_angle.PDB_model_num              1 
_pdbx_validate_rmsd_angle.auth_atom_id_1             "O5'" 
_pdbx_validate_rmsd_angle.auth_asym_id_1             A 
_pdbx_validate_rmsd_angle.auth_comp_id_1             DG 
_pdbx_validate_rmsd_angle.auth_seq_id_1              4 
_pdbx_validate_rmsd_angle.PDB_ins_code_1             ? 
_pdbx_validate_rmsd_angle.label_alt_id_1             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_2             P 
_pdbx_validate_rmsd_angle.auth_asym_id_2             A 
_pdbx_validate_rmsd_angle.auth_comp_id_2             DG 
_pdbx_validate_rmsd_angle.auth_seq_id_2              4 
_pdbx_validate_rmsd_angle.PDB_ins_code_2             ? 
_pdbx_validate_rmsd_angle.label_alt_id_2             ? 
_pdbx_validate_rmsd_angle.auth_atom_id_3             OP2 
_pdbx_validate_rmsd_angle.auth_asym_id_3             A 
_pdbx_validate_rmsd_angle.auth_comp_id_3             DG 
_pdbx_validate_rmsd_angle.auth_seq_id_3              4 
_pdbx_validate_rmsd_angle.PDB_ins_code_3             ? 
_pdbx_validate_rmsd_angle.label_alt_id_3             ? 
_pdbx_validate_rmsd_angle.angle_value                99.32 
_pdbx_validate_rmsd_angle.angle_target_value         105.70 
_pdbx_validate_rmsd_angle.angle_deviation            -6.38 
_pdbx_validate_rmsd_angle.angle_standard_deviation   0.90 
_pdbx_validate_rmsd_angle.linker_flag                N 
# 
_pdbx_validate_planes.id              1 
_pdbx_validate_planes.PDB_model_num   1 
_pdbx_validate_planes.auth_comp_id    DC 
_pdbx_validate_planes.auth_asym_id    A 
_pdbx_validate_planes.auth_seq_id     5 
_pdbx_validate_planes.PDB_ins_code    ? 
_pdbx_validate_planes.label_alt_id    ? 
_pdbx_validate_planes.rmsd            0.072 
_pdbx_validate_planes.type            'SIDE CHAIN' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BA  BA     BA N N 1   
CL  CL     CL N N 2   
DA  OP3    O  N N 3   
DA  P      P  N N 4   
DA  OP1    O  N N 5   
DA  OP2    O  N N 6   
DA  "O5'"  O  N N 7   
DA  "C5'"  C  N N 8   
DA  "C4'"  C  N R 9   
DA  "O4'"  O  N N 10  
DA  "C3'"  C  N S 11  
DA  "O3'"  O  N N 12  
DA  "C2'"  C  N N 13  
DA  "C1'"  C  N R 14  
DA  N9     N  Y N 15  
DA  C8     C  Y N 16  
DA  N7     N  Y N 17  
DA  C5     C  Y N 18  
DA  C6     C  Y N 19  
DA  N6     N  N N 20  
DA  N1     N  Y N 21  
DA  C2     C  Y N 22  
DA  N3     N  Y N 23  
DA  C4     C  Y N 24  
DA  HOP3   H  N N 25  
DA  HOP2   H  N N 26  
DA  "H5'"  H  N N 27  
DA  "H5''" H  N N 28  
DA  "H4'"  H  N N 29  
DA  "H3'"  H  N N 30  
DA  "HO3'" H  N N 31  
DA  "H2'"  H  N N 32  
DA  "H2''" H  N N 33  
DA  "H1'"  H  N N 34  
DA  H8     H  N N 35  
DA  H61    H  N N 36  
DA  H62    H  N N 37  
DA  H2     H  N N 38  
DC  OP3    O  N N 39  
DC  P      P  N N 40  
DC  OP1    O  N N 41  
DC  OP2    O  N N 42  
DC  "O5'"  O  N N 43  
DC  "C5'"  C  N N 44  
DC  "C4'"  C  N R 45  
DC  "O4'"  O  N N 46  
DC  "C3'"  C  N S 47  
DC  "O3'"  O  N N 48  
DC  "C2'"  C  N N 49  
DC  "C1'"  C  N R 50  
DC  N1     N  N N 51  
DC  C2     C  N N 52  
DC  O2     O  N N 53  
DC  N3     N  N N 54  
DC  C4     C  N N 55  
DC  N4     N  N N 56  
DC  C5     C  N N 57  
DC  C6     C  N N 58  
DC  HOP3   H  N N 59  
DC  HOP2   H  N N 60  
DC  "H5'"  H  N N 61  
DC  "H5''" H  N N 62  
DC  "H4'"  H  N N 63  
DC  "H3'"  H  N N 64  
DC  "HO3'" H  N N 65  
DC  "H2'"  H  N N 66  
DC  "H2''" H  N N 67  
DC  "H1'"  H  N N 68  
DC  H41    H  N N 69  
DC  H42    H  N N 70  
DC  H5     H  N N 71  
DC  H6     H  N N 72  
DG  OP3    O  N N 73  
DG  P      P  N N 74  
DG  OP1    O  N N 75  
DG  OP2    O  N N 76  
DG  "O5'"  O  N N 77  
DG  "C5'"  C  N N 78  
DG  "C4'"  C  N R 79  
DG  "O4'"  O  N N 80  
DG  "C3'"  C  N S 81  
DG  "O3'"  O  N N 82  
DG  "C2'"  C  N N 83  
DG  "C1'"  C  N R 84  
DG  N9     N  Y N 85  
DG  C8     C  Y N 86  
DG  N7     N  Y N 87  
DG  C5     C  Y N 88  
DG  C6     C  N N 89  
DG  O6     O  N N 90  
DG  N1     N  N N 91  
DG  C2     C  N N 92  
DG  N2     N  N N 93  
DG  N3     N  N N 94  
DG  C4     C  Y N 95  
DG  HOP3   H  N N 96  
DG  HOP2   H  N N 97  
DG  "H5'"  H  N N 98  
DG  "H5''" H  N N 99  
DG  "H4'"  H  N N 100 
DG  "H3'"  H  N N 101 
DG  "HO3'" H  N N 102 
DG  "H2'"  H  N N 103 
DG  "H2''" H  N N 104 
DG  "H1'"  H  N N 105 
DG  H8     H  N N 106 
DG  H1     H  N N 107 
DG  H21    H  N N 108 
DG  H22    H  N N 109 
DOD O      O  N N 110 
DOD D1     D  N N 111 
DOD D2     D  N N 112 
RKL RU     RU N N 113 
RKL C1     C  Y N 114 
RKL N1     N  Y N 115 
RKL C2     C  Y N 116 
RKL N2     N  Y N 117 
RKL C3     C  Y N 118 
RKL N3     N  Y N 119 
RKL C4     C  Y N 120 
RKL N4     N  Y N 121 
RKL C5     C  Y N 122 
RKL N5     N  Y N 123 
RKL C6     C  Y N 124 
RKL N6     N  Y N 125 
RKL C7     C  Y N 126 
RKL N7     N  Y N 127 
RKL C8     C  Y N 128 
RKL N8     N  Y N 129 
RKL C9     C  Y N 130 
RKL N9     N  Y N 131 
RKL C10    C  Y N 132 
RKL N10    N  Y N 133 
RKL C11    C  Y N 134 
RKL N11    N  Y N 135 
RKL C12    C  Y N 136 
RKL N12    N  Y N 137 
RKL C13    C  Y N 138 
RKL C14    C  Y N 139 
RKL C15    C  Y N 140 
RKL C16    C  Y N 141 
RKL C17    C  Y N 142 
RKL C18    C  Y N 143 
RKL C19    C  Y N 144 
RKL C20    C  Y N 145 
RKL C21    C  Y N 146 
RKL C22    C  Y N 147 
RKL C23    C  Y N 148 
RKL C24    C  Y N 149 
RKL C25    C  Y N 150 
RKL C26    C  Y N 151 
RKL C27    C  Y N 152 
RKL C28    C  Y N 153 
RKL C29    C  Y N 154 
RKL C30    C  Y N 155 
RKL C31    C  Y N 156 
RKL C32    C  Y N 157 
RKL C33    C  Y N 158 
RKL C34    C  Y N 159 
RKL C35    C  Y N 160 
RKL C36    C  Y N 161 
RKL C37    C  Y N 162 
RKL C38    C  Y N 163 
RKL H2     H  N N 164 
RKL H3     H  N N 165 
RKL H4     H  N N 166 
RKL H9     H  N N 167 
RKL H11    H  N N 168 
RKL H12    H  N N 169 
RKL H14    H  N N 170 
RKL H16    H  N N 171 
RKL H17    H  N N 172 
RKL H18    H  N N 173 
RKL H20    H  N N 174 
RKL H21    H  N N 175 
RKL H23    H  N N 176 
RKL H24    H  N N 177 
RKL H27    H  N N 178 
RKL H28    H  N N 179 
RKL H30    H  N N 180 
RKL H31    H  N N 181 
RKL H33    H  N N 182 
RKL H34    H  N N 183 
RKL H37    H  N N 184 
RKL H38    H  N N 185 
THM "O5'"  O  N N 186 
THM "C5'"  C  N N 187 
THM "C4'"  C  N R 188 
THM "O4'"  O  N N 189 
THM "C3'"  C  N S 190 
THM "O3'"  O  N N 191 
THM "C2'"  C  N N 192 
THM "C1'"  C  N R 193 
THM N1     N  N N 194 
THM C2     C  N N 195 
THM O2     O  N N 196 
THM N3     N  N N 197 
THM C4     C  N N 198 
THM O4     O  N N 199 
THM C5     C  N N 200 
THM C5M    C  N N 201 
THM C6     C  N N 202 
THM "HO5'" H  N N 203 
THM "H5'1" H  N N 204 
THM "H5'2" H  N N 205 
THM "H4'"  H  N N 206 
THM "H3'"  H  N N 207 
THM "HO3'" H  N N 208 
THM "H2'1" H  N N 209 
THM "H2'2" H  N N 210 
THM "H1'"  H  N N 211 
THM HN3    H  N N 212 
THM HM51   H  N N 213 
THM HM52   H  N N 214 
THM HM53   H  N N 215 
THM H6     H  N N 216 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DOD O     D1     sing N N 113 
DOD O     D2     sing N N 114 
RKL RU    N1     sing N N 115 
RKL RU    N2     sing N N 116 
RKL RU    N5     sing N N 117 
RKL RU    N8     sing N N 118 
RKL RU    N9     sing N N 119 
RKL RU    N12    sing N N 120 
RKL C1    N2     doub Y N 121 
RKL C1    C5     sing Y N 122 
RKL C1    C10    sing Y N 123 
RKL N1    C10    doub Y N 124 
RKL N1    C12    sing Y N 125 
RKL C2    N2     sing Y N 126 
RKL C2    C3     doub Y N 127 
RKL C2    H2     sing N N 128 
RKL C3    C4     sing Y N 129 
RKL C3    H3     sing N N 130 
RKL N3    C6     doub Y N 131 
RKL N3    C15    sing Y N 132 
RKL C4    C5     doub Y N 133 
RKL C4    H4     sing N N 134 
RKL N4    C7     doub Y N 135 
RKL N4    C13    sing Y N 136 
RKL C5    C6     sing Y N 137 
RKL N5    C19    doub Y N 138 
RKL N5    C20    sing Y N 139 
RKL C6    C7     sing Y N 140 
RKL N6    C21    sing Y N 141 
RKL N6    C22    doub Y N 142 
RKL C7    C8     sing Y N 143 
RKL N7    C25    doub Y N 144 
RKL N7    C27    sing Y N 145 
RKL C8    C9     doub Y N 146 
RKL C8    C10    sing Y N 147 
RKL N8    C26    doub Y N 148 
RKL N8    C28    sing Y N 149 
RKL C9    C11    sing Y N 150 
RKL C9    H9     sing N N 151 
RKL N9    C29    doub Y N 152 
RKL N9    C30    sing Y N 153 
RKL N10   C31    sing Y N 154 
RKL N10   C32    doub Y N 155 
RKL C11   C12    doub Y N 156 
RKL C11   H11    sing N N 157 
RKL N11   C35    doub Y N 158 
RKL N11   C37    sing Y N 159 
RKL C12   H12    sing N N 160 
RKL N12   C36    doub Y N 161 
RKL N12   C38    sing Y N 162 
RKL C13   C14    sing Y N 163 
RKL C13   C15    doub Y N 164 
RKL C14   C18    doub Y N 165 
RKL C14   H14    sing N N 166 
RKL C15   C16    sing Y N 167 
RKL C16   C17    doub Y N 168 
RKL C16   H16    sing N N 169 
RKL C17   C18    sing Y N 170 
RKL C17   H17    sing N N 171 
RKL C18   H18    sing N N 172 
RKL C19   C22    sing Y N 173 
RKL C19   C26    sing Y N 174 
RKL C20   C21    doub Y N 175 
RKL C20   H20    sing N N 176 
RKL C21   H21    sing N N 177 
RKL C22   C23    sing Y N 178 
RKL C23   C24    doub Y N 179 
RKL C23   H23    sing N N 180 
RKL C24   C25    sing Y N 181 
RKL C24   H24    sing N N 182 
RKL C25   C26    sing Y N 183 
RKL C27   C28    doub Y N 184 
RKL C27   H27    sing N N 185 
RKL C28   H28    sing N N 186 
RKL C29   C32    sing Y N 187 
RKL C29   C36    sing Y N 188 
RKL C30   C31    doub Y N 189 
RKL C30   H30    sing N N 190 
RKL C31   H31    sing N N 191 
RKL C32   C33    sing Y N 192 
RKL C33   C34    doub Y N 193 
RKL C33   H33    sing N N 194 
RKL C34   C35    sing Y N 195 
RKL C34   H34    sing N N 196 
RKL C35   C36    sing Y N 197 
RKL C37   C38    doub Y N 198 
RKL C37   H37    sing N N 199 
RKL C38   H38    sing N N 200 
THM "O5'" "C5'"  sing N N 201 
THM "O5'" "HO5'" sing N N 202 
THM "C5'" "C4'"  sing N N 203 
THM "C5'" "H5'1" sing N N 204 
THM "C5'" "H5'2" sing N N 205 
THM "C4'" "O4'"  sing N N 206 
THM "C4'" "C3'"  sing N N 207 
THM "C4'" "H4'"  sing N N 208 
THM "O4'" "C1'"  sing N N 209 
THM "C3'" "O3'"  sing N N 210 
THM "C3'" "C2'"  sing N N 211 
THM "C3'" "H3'"  sing N N 212 
THM "O3'" "HO3'" sing N N 213 
THM "C2'" "C1'"  sing N N 214 
THM "C2'" "H2'1" sing N N 215 
THM "C2'" "H2'2" sing N N 216 
THM "C1'" N1     sing N N 217 
THM "C1'" "H1'"  sing N N 218 
THM N1    C2     sing N N 219 
THM N1    C6     sing N N 220 
THM C2    O2     doub N N 221 
THM C2    N3     sing N N 222 
THM N3    C4     sing N N 223 
THM N3    HN3    sing N N 224 
THM C4    O4     doub N N 225 
THM C4    C5     sing N N 226 
THM C5    C5M    sing N N 227 
THM C5    C6     doub N N 228 
THM C5M   HM51   sing N N 229 
THM C5M   HM52   sing N N 230 
THM C5M   HM53   sing N N 231 
THM C6    H6     sing N N 232 
# 
_ndb_struct_conf_na.entry_id   4R8J 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 2 1_555 A DG 9 7_555 0.126  -0.080 0.238  -11.206 6.225  1.984  1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 
1 A DG 3 1_555 A DC 8 7_555 -0.208 -0.030 0.177  24.280  -5.095 -0.544 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 
1 A DG 4 1_555 A DC 7 7_555 -0.193 -0.169 -0.043 -6.558  1.887  -1.550 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 
1 A DC 5 1_555 A DG 6 7_555 0.247  -0.093 0.128  0.985   -5.117 -1.288 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 
1 A DG 6 1_555 A DC 5 7_555 -0.247 -0.093 0.128  -0.985  -5.117 -1.288 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 
1 A DC 7 1_555 A DG 4 7_555 0.193  -0.169 -0.043 6.558   1.887  -1.550 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 
1 A DC 8 1_555 A DG 3 7_555 0.208  -0.030 0.177  -24.280 -5.095 -0.544 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 
1 A DG 9 1_555 A DC 2 7_555 -0.126 -0.080 0.238  11.206  6.225  1.984  8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 2 1_555 A DG 9 7_555 A DG 3 1_555 A DC 8 7_555 -0.528 1.674 2.615 2.222  3.362  19.912 3.481  2.335  2.781 9.595  -6.342 
20.311 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 
1 A DG 3 1_555 A DC 8 7_555 A DG 4 1_555 A DC 7 7_555 -0.103 0.837 5.152 -1.932 49.764 14.724 -5.355 -0.127 2.314 74.512 2.892  
51.800 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 
1 A DG 4 1_555 A DC 7 7_555 A DC 5 1_555 A DG 6 7_555 -0.847 0.255 3.143 -1.797 -3.744 40.730 0.760  1.022  3.141 -5.363 2.574  
40.933 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 
1 A DC 5 1_555 A DG 6 7_555 A DG 6 1_555 A DC 5 7_555 0.000  1.179 3.801 0.000  29.050 23.383 -3.426 0.000  3.328 51.969 0.000  
37.134 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 
1 A DG 6 1_555 A DC 5 7_555 A DC 7 1_555 A DG 4 7_555 0.847  0.255 3.143 1.797  -3.744 40.730 0.760  -1.022 3.141 -5.363 -2.574 
40.933 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 
1 A DC 7 1_555 A DG 4 7_555 A DC 8 1_555 A DG 3 7_555 0.103  0.837 5.152 1.932  49.764 14.724 -5.355 0.127  2.314 74.512 -2.892 
51.800 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 
1 A DC 8 1_555 A DG 3 7_555 A DG 9 1_555 A DC 2 7_555 0.528  1.674 2.615 -2.222 3.362  19.912 3.481  -2.335 2.781 9.595  6.342  
20.311 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? 
# 
_atom_sites.entry_id                    4R8J 
_atom_sites.fract_transf_matrix[1][1]   0.023602 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.023602 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.025368 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BA 
C  
CL 
D  
H  
N  
O  
P  
RU 
# 
loop_